mRNA_H-akashiwo_Contig944.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig944.10.1
Unique NamemRNA_H-akashiwo_Contig944.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig944.10.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 481 bits (1237), Expect = 1.300e-167
Identity = 236/241 (97.93%), Postives = 240/241 (99.59%), Query Frame = 1
Query:    1 QLLERIDADLDKEKKTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPK 723
            QLLERIDADLDKEK+TQM++LLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEIT DLLKQGVISESSSNFNAPIVMVAKK+GETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPK
Sbjct:   46 QLLERIDADLDKEKRTQMMELLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEITEDLLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPK 286          
BLAST of mRNA_H-akashiwo_Contig944.10.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 482 bits (1241), Expect = 1.430e-165
Identity = 238/241 (98.76%), Postives = 239/241 (99.17%), Query Frame = 1
Query:    1 QLLERIDADLDKEKKTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPK 723
            QLLERIDADLDKEKK QMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEIT DLLKQGVISESSSNFNAPIVMVAKK+GETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPK
Sbjct:   46 QLLERIDADLDKEKKAQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYVKPYRMSPAQLQKAEEITEDLLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPK 286          
BLAST of mRNA_H-akashiwo_Contig944.10.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 255 bits (652), Expect = 2.030e-81
Identity = 122/148 (82.43%), Postives = 133/148 (89.86%), Query Frame = 1
Query:  280 MVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPK 723
            MV KKTGETRMCLDLR+LNAITTP+KFPLPT REMFD L  AYYF+SLDMLWAYWSVPLR+ DK KTAFTVRN+KYAFNVMCFGLTNAPATFSHLVNKVFQGCQ++FALCFLDDVLCY+  +F+LHL  L +IF RM  ANLKFKLPK
Sbjct:    1 MVKKKTGETRMCLDLRSLNAITTPAKFPLPTPREMFDQLEGAYYFSSLDMLWAYWSVPLRDEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSHLVNKVFQGCQHDFALCFLDDVLCYTGPDFSLHLRQLEEIFIRMIKANLKFKLPK 148          
BLAST of mRNA_H-akashiwo_Contig944.10.1 vs. uniprot
Match: A0A147BIK4_IXORI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A147BIK4_IXORI)

HSP 1 Score: 184 bits (467), Expect = 1.220e-49
Identity = 92/235 (39.15%), Postives = 144/235 (61.28%), Query Frame = 1
Query:    4 LLERIDADLDKEKKTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGD-KVAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANL 705
            LL  ID+DL+   K Q+++LL ++Q  F       +TT  + H I +   ++ + +PYR+SP++ +  ++   ++L++G+I  SSS +++P+V+V KK G  R C+D R LN IT    +PLP   +  D L  A YF+SLD+   YW +P++E DK KTAF   +    FNVM FGL NAPATF  +++ V +G ++   LC+LDD++ +S R F  HL  LS++   +  ANL
Sbjct:  238 LLNAIDSDLEDVHKKQIINLLTRFQSCFDVYTSFTSTTKSVAHTINTPPGEIVHQRPYRVSPSERRTIDQEVSEMLRKGIIRPSSSPWSSPVVLVRKKDGSIRFCVDYRRLNKITRKDVYPLPRIDDTLDTLQGAEYFSSLDLKSGYWQIPMKEEDKEKTAFITTDGLXEFNVMPFGLCNAPATFERMIDNVLRGLKWHICLCYLDDIIIFS-RTFNDHLLRLSEVLVCLAKANL 471          
BLAST of mRNA_H-akashiwo_Contig944.10.1 vs. uniprot
Match: UPI0007EF9E1E (uncharacterized protein LOC108214236 n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF9E1E)

HSP 1 Score: 177 bits (450), Expect = 2.030e-47
Identity = 100/229 (43.67%), Postives = 136/229 (59.39%), Query Frame = 1
Query:   43 KTQMLDLLWQYQDVFKAPEGIPTTTPLITHAI--QSGDKVAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPK 723
            K Q+ +LL +Y D+FKAPEG+P     I H+I  + G +   ++PYR S  Q  + E++  ++L+ G+I  SSS F +PI++V KK G  R C+D R LN++T  +KFP+P   E+ D L  A YFT LD+   Y  V ++E D  KTAF      Y F VM FGLTNAPATF  L+N+VF+     F L F DD+L YS      HL HL ++F+ MR   L  K  K
Sbjct:  497 KKQLHNLLEEYSDIFKAPEGLPPERQ-IEHSIDLKEGSQPFSIRPYRNSYNQKNEIEKLVAEMLESGIIRPSSSPFASPILLVKKKDGSWRFCIDYRKLNSMTIKNKFPIPLIEELLDELHGAKYFTKLDLRAGYHQVRMKERDVEKTAFRTHLGHYEFTVMPFGLTNAPATFQSLMNEVFRPYLRSFTLVFFDDILVYSKTKED-HLVHLKKVFQLMRQNTLFAKQSK 723          
BLAST of mRNA_H-akashiwo_Contig944.10.1 vs. uniprot
Match: A0A6G5A8Y6_RHIMP (Putative tick transposon (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5A8Y6_RHIMP)

HSP 1 Score: 170 bits (430), Expect = 2.210e-47
Identity = 88/237 (37.13%), Postives = 141/237 (59.49%), Query Frame = 1
Query:   16 IDADLDKEKKTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAY-VKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPK 723
            ID++L   ++ ++++LL +++  F   +   + T  + H I +G +     +PYR+S A+ +  +E   D+LK+G+I  S+S + +P+V+V KK G  R C+D R LN IT    +PLP   +  D L  A +F+SLD+   YW VP+ EGD+ KTAF   +  Y F VM FGL NAPATF  +++ V +G +++  LC+LDD++ +S  +F  HL  L Q+   +  A L+  L K
Sbjct:   69 IDSELAPTQREEIINLLLRFRSSFDRDQSGLSRTSAVVHRIDTGQQAPLRQRPYRVSSAERRVIDEQVDDMLKRGIIEPSNSPWASPVVLVRKKDGSIRFCVDYRRLNKITRKDVYPLPRIDDALDCLQGAEFFSSLDLRSGYWQVPMAEGDRPKTAFVTPDGLYEFTVMPFGLCNAPATFERMMDTVLRGLKWKTCLCYLDDIVVFSS-DFATHLSRLEQVLTCLSTARLQLNLKK 304          
BLAST of mRNA_H-akashiwo_Contig944.10.1 vs. uniprot
Match: UPI001CF1BC7F (uncharacterized protein LOC122963367 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1BC7F)

HSP 1 Score: 176 bits (446), Expect = 5.400e-47
Identity = 89/231 (38.53%), Postives = 139/231 (60.17%), Query Frame = 1
Query:   19 DADLDKEKKTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGDKVAYV-KPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLK 708
            D+ L +  K +  DL   Y+DVF   +     T L+ H I +GD +    +PYR SP   Q+ +    D+L++G+I ES S +++P+V+V KK G  R C+DLR +NA+T    FP+P   +  D L+   YF++LD+   YW + +    + KTAF   N  Y FNVM FGLTN+ A+F  L+  + +G +Y FAL ++DD++ +S ++   HL HL ++F+R+R AN+K
Sbjct:  557 DSVLSEADKIKFGDLFQSYRDVFAFTDDQLGKTSLVQHVIDTGDALPIKQRPYRTSPKCKQEIDRQVEDMLQKGIIRESVSPWSSPVVLVKKKDGSFRFCVDLRKVNAVTRKDSFPMPLVSDTLDALSGTKYFSTLDLKSGYWQIEMHPESREKTAFVTHNGLYEFNVMPFGLTNSGASFQCLMGHILRGLEYRFALIYIDDIVIFS-KSIDEHLTHLEEVFRRLREANVK 786          
BLAST of mRNA_H-akashiwo_Contig944.10.1 vs. uniprot
Match: A0A392P4D4_9FABA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392P4D4_9FABA)

HSP 1 Score: 163 bits (412), Expect = 2.430e-46
Identity = 92/223 (41.26%), Postives = 130/223 (58.30%), Query Frame = 1
Query:   61 LLWQYQDVFKAPEGIPTTTPLITHAI--QSGDKVAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPK 723
            LL  Y  VF+ PE +P       HAI  + G     V+PYR    Q ++ E++  ++L+QG+I  S+S F++PI++V KK G  R C D RALNAIT    FP+PT  E+ D L  A YF+ LD+   Y  + ++  D+ KTAF   +  Y + VM FGLTNAPATF  L+NK+FQ    +F L F DD+L YS  ++  HL HL  + + ++   L  +L K
Sbjct:    2 LLHTYAKVFEIPESLPPQREQ-DHAIPLKQGSDPVKVRPYRYPHTQKEQIEKMVQEMLQQGIIQPSNSPFSSPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELYGAKYFSKLDLRSGYHQILVQPDDRHKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQTALRKFVLVFFDDILVYSS-SWISHLSHLETVLQVLQHHQLYARLSK 222          
BLAST of mRNA_H-akashiwo_Contig944.10.1 vs. uniprot
Match: L7LV08_RHIPC (Putative tick transposon n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7LV08_RHIPC)

HSP 1 Score: 173 bits (438), Expect = 5.030e-46
Identity = 90/237 (37.97%), Postives = 142/237 (59.92%), Query Frame = 1
Query:   16 IDADLDKEKKTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQS-GDKVAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPK 723
            I+ DL   ++  +L+LL ++Q  F A       T + +H I + G +V   +PYR+S A+ +  EE   D+LK+ +I  S+S++++P+V+V KK G  R C+D RALN IT    +P+P   +  D+L  A YF++LD+   YW +P+ E DK KTAF+  +  Y FNVM FGL NAPATF  +++ V +G +++  LC+LDD++ +S   F  HL  L ++   +  A L+    K
Sbjct:  234 INPDLPASQRAALLELLTKHQASFDANASALGQTTVASHRIDTDGQRVVRRRPYRVSLAERKIIEENVADMLKRNIIRPSASSWSSPVVLVQKKDGSVRFCVDYRALNKITRKDVYPMPRIDDALDSLQGAQYFSTLDLRSGYWQIPMDEADKEKTAFSTPDGLYEFNVMPFGLCNAPATFERMIDTVLRGLKWKTCLCYLDDIVVFSS-TFADHLQRLDEVLTCLANAGLQLNTKK 469          
BLAST of mRNA_H-akashiwo_Contig944.10.1 vs. uniprot
Match: L7MMH8_RHIPC (RNA-directed DNA polymerase (Fragment) n=2 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MMH8_RHIPC)

HSP 1 Score: 173 bits (438), Expect = 8.860e-46
Identity = 90/237 (37.97%), Postives = 142/237 (59.92%), Query Frame = 1
Query:   16 IDADLDKEKKTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQS-GDKVAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPK 723
            I+ DL   ++  +L+LL ++Q  F A       T + +H I + G +V   +PYR+S A+ +  EE   D+LK+ +I  S+S++++P+V+V KK G  R C+D RALN IT    +P+P   +  D+L  A YF++LD+   YW +P+ E DK KTAF+  +  Y FNVM FGL NAPATF  +++ V +G +++  LC+LDD++ +S   F  HL  L ++   +  A L+    K
Sbjct:  234 INPDLPASQRAALLELLTKHQASFDANASALGQTTVASHRIDTDGQRVVRRRPYRVSLAERKIIEENVADMLKRNIIRPSASSWSSPVVLVQKKDGSVRFCVDYRALNKITRKDVYPMPRIDDALDSLQGAQYFSTLDLRSGYWQIPMDEADKEKTAFSTPDGLYEFNVMPFGLCNAPATFERMIDTVLRGLKWKTCLCYLDDIVVFSS-TFADHLQRLDEVLTCLANAGLQLNTKK 469          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig944.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XVA0_HETAK1.300e-16797.93Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XV63_HETAK1.430e-16598.76Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3XU57_HETAK2.030e-8182.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A147BIK4_IXORI1.220e-4939.15RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixo... [more]
UPI0007EF9E1E2.030e-4743.67uncharacterized protein LOC108214236 n=2 Tax=Daucu... [more]
A0A6G5A8Y6_RHIMP2.210e-4737.13Putative tick transposon (Fragment) n=1 Tax=Rhipic... [more]
UPI001CF1BC7F5.400e-4738.53uncharacterized protein LOC122963367 n=2 Tax=Acrop... [more]
A0A392P4D4_9FABA2.430e-4641.26Reverse transcriptase domain-containing protein (F... [more]
L7LV08_RHIPC5.030e-4637.97Putative tick transposon n=1 Tax=Rhipicephalus pul... [more]
L7MMH8_RHIPC8.860e-4637.97RNA-directed DNA polymerase (Fragment) n=2 Tax=Rhi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig944contigH-akashiwo_Contig944:394066..394788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4096.XP_009797113.1
PFAMsRVP_2,RVT_1,Retrotrans_gag,rve
Model size723
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.57e-46
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37NRU@33090|Viridiplantae,3GGV0@35493|Streptophyta,44PGP@71274|asterids
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size723
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388053.3857157-CDS-H-akashiwo_Contig944:394065..3947881681388053.3857157-CDS-H-akashiwo_Contig944:394065..394788Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig944 394066..394788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig944.10.1prot_H-akashiwo_Contig944.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig944 394066..394788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig944.10.1

>prot_H-akashiwo_Contig944.10.1 ID=prot_H-akashiwo_Contig944.10.1|Name=mRNA_H-akashiwo_Contig944.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=241bp
QLLERIDADLDKEKKTQMLDLLWQYQDVFKAPEGIPTTTPLITHAIQSGD
KVAYVKPYRMSPAQLQKAEEITGDLLKQGVISESSSNFNAPIVMVAKKTG
ETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSV
PLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEF
ALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPK
back to top

mRNA from alignment at H-akashiwo_Contig944:394066..394788-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig944.10.1 ID=mRNA_H-akashiwo_Contig944.10.1|Name=mRNA_H-akashiwo_Contig944.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=723bp|location=Sequence derived from alignment at H-akashiwo_Contig944:394066..394788- (Heterosigma akashiwo CCMP452)
CAACTTTTAGAGCGGATTGACGCTGATCTGGACAAGGAGAAGAAGACACA GATGCTGGATCTATTGTGGCAATATCAGGACGTATTCAAGGCACCAGAGG GGATACCAACTACAACACCTTTAATCACTCATGCTATACAGAGTGGAGAC AAGGTGGCTTATGTGAAACCATACAGGATGTCACCAGCACAGCTGCAGAA AGCAGAAGAGATCACAGGAGATTTACTGAAGCAAGGAGTAATCTCAGAGA GTTCAAGTAACTTCAATGCACCAATAGTAATGGTGGCTAAGAAGACTGGG GAGACACGAATGTGCTTAGACTTAAGAGCTTTGAACGCTATCACAACGCC ATCAAAGTTCCCTTTACCAACAGCCAGGGAAATGTTTGACAATTTGGCGG AGGCGTACTACTTTACCAGCTTGGACATGCTATGGGCATATTGGAGCGTT CCGCTGAGAGAAGGGGACAAGTCCAAGACAGCTTTTACTGTAAGGAACAG AAAGTATGCATTCAACGTGATGTGCTTTGGATTAACAAATGCACCAGCTA CTTTCAGCCATTTGGTAAACAAGGTTTTTCAGGGGTGCCAGTATGAGTTT GCACTATGTTTTCTGGACGACGTACTGTGCTACTCACCCAGGAACTTCAC ATTACATTTGTACCATTTGAGTCAGATATTCAAGAGGATGAGAGCAGCCA ACTTGAAGTTCAAATTGCCCAAA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig944:394066..394788-

>mRNA_H-akashiwo_Contig944.10.1 ID=mRNA_H-akashiwo_Contig944.10.1|Name=mRNA_H-akashiwo_Contig944.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=723bp|location=Sequence derived from alignment at H-akashiwo_Contig944:394066..394788- (Heterosigma akashiwo CCMP452)
CAACTTTTAGAGCGGATTGACGCTGATCTGGACAAGGAGAAGAAGACACA
GATGCTGGATCTATTGTGGCAATATCAGGACGTATTCAAGGCACCAGAGG
GGATACCAACTACAACACCTTTAATCACTCATGCTATACAGAGTGGAGAC
AAGGTGGCTTATGTGAAACCATACAGGATGTCACCAGCACAGCTGCAGAA
AGCAGAAGAGATCACAGGAGATTTACTGAAGCAAGGAGTAATCTCAGAGA
GTTCAAGTAACTTCAATGCACCAATAGTAATGGTGGCTAAGAAGACTGGG
GAGACACGAATGTGCTTAGACTTAAGAGCTTTGAACGCTATCACAACGCC
ATCAAAGTTCCCTTTACCAACAGCCAGGGAAATGTTTGACAATTTGGCGG
AGGCGTACTACTTTACCAGCTTGGACATGCTATGGGCATATTGGAGCGTT
CCGCTGAGAGAAGGGGACAAGTCCAAGACAGCTTTTACTGTAAGGAACAG
AAAGTATGCATTCAACGTGATGTGCTTTGGATTAACAAATGCACCAGCTA
CTTTCAGCCATTTGGTAAACAAGGTTTTTCAGGGGTGCCAGTATGAGTTT
GCACTATGTTTTCTGGACGACGTACTGTGCTACTCACCCAGGAACTTCAC
ATTACATTTGTACCATTTGAGTCAGATATTCAAGAGGATGAGAGCAGCCA
ACTTGAAGTTCAAATTGCCCAAA
back to top