mRNA_H-akashiwo_Contig943.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig943.7.1
Unique NamemRNA_H-akashiwo_Contig943.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig943.7.1 vs. uniprot
Match: A0A7S3Y697_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y697_HETAK)

HSP 1 Score: 222 bits (566), Expect = 4.810e-71
Identity = 105/116 (90.52%), Postives = 106/116 (91.38%), Query Frame = 1
Query:  319 DVLEAQLPVDGKKLREEIHNCWSIWDPNGSGRIDRRELLGDNGLMRFAQANWPFQRERPPDIRTAPMAWFNFWDDDNSHNLDKDEVARALVRTFAAGRG---------AVELARLR 639
            DVLEAQLPVDGKKLREEIHNCWSIWDPNGSGRIDRRELLGDNGLMRFAQANWPFQRERPPDIRTAPMAWFNFWDDDNSH+LDKDEVARALVRTFAAG G         AVELARLR
Sbjct:    1 DVLEAQLPVDGKKLREEIHNCWSIWDPNGSGRIDRRELLGDNGLMRFAQANWPFQRERPPDIRTAPMAWFNFWDDDNSHSLDKDEVARALVRTFAAGSGXXXXXXTGGAVELARLR 116          
BLAST of mRNA_H-akashiwo_Contig943.7.1 vs. uniprot
Match: C1E6Q1_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E6Q1_MICCC)

HSP 1 Score: 209 bits (531), Expect = 1.080e-62
Identity = 98/245 (40.00%), Postives = 142/245 (57.96%), Query Frame = 1
Query:   55 ECAICFENLFKHQTAAF--------KKSSQRTCRHFFHAECIEPLLQDRSREPRCPLCNASVDAIMTIPNPLEDPEGWFIAVDLDGNGELDQTEVCDVLEAQLPVDGKKLREEIHNCWSIWDPNGSGRIDRRELLGDNGLMRFAQANWPFQRER----PPDIRTAPMAWFNFWDDDNSHNLDKDEVARALVRTFAAGRGAVELARLRALRETVDAVWPLFDEDGNGTISAEEFCRENGLGETIVA 753
            ECA+CF+ L   +TA          +K   R+C HFFH  C   L   R    +CP+C A  + ++ +P+P EDP+GWF AVD+DG+G L  +EV + L AQ+  D   +  ++   W  WD NG G +++ EL+   GL+ +   ++P +  R    PP I  AP  WF +WD+D S  L+K+EV RALV+TF  G    ++  LR +R+ VDAVW +FD DG+G +   EF   +GL +TIVA
Sbjct:   95 ECAVCFDPLCAQRTAVLTQEHGRGMRKERTRSCAHFFHLACANEL---RVHHAKCPICRAPFNGVLPVPSPGEDPDGWFAAVDVDGDGRLSPSEVLEALRAQIRCDWHAIERQLPKLWRRWDVNGDGYVEKNELVSRGGLIEYVTKHFPKREHRERPPPPSIARAPNEWFEYWDEDGSGELEKEEVVRALVKTFGLG---ADMPSLRNIRQIVDAVWCVFDPDGSGAVDRREFLMRDGLADTIVA 333          
BLAST of mRNA_H-akashiwo_Contig943.7.1 vs. uniprot
Match: A0A7S4KXW1_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KXW1_GUITH)

HSP 1 Score: 196 bits (499), Expect = 1.550e-57
Identity = 93/244 (38.11%), Postives = 145/244 (59.43%), Query Frame = 1
Query:   46 QLSECAICFENLFKHQTAAFKKSSQRTCRHFFHAECIEPLLQDRSREPRCPLCNASVDAIMTIPNPLEDPEGWFIAVDLDGNGELDQTEVCDVLEAQLPVDGKKLREEIHNCWSIWDPNGSGRIDRRELLGDNGLMRFAQANW--PFQRE-RPPDIRTAPMAWFNFWDDDNSHNLDKDEVARALVRTFAAGRGAVELARLRALRETVDAVWPLFDEDGNGTISAEEFCRENGLGETIVAQIRFS 768
            + +EC +CF+++ K   + F K+S+R C HF H  C   ++        CP+C  S D++  +P+  EDPEGWF AVDL G G L+Q EV +VL+AQLP+D ++L E +   W  WD  G G I + E L  +GL+   + ++    +RE R PD+R     WF++WD D S  L+++E+ RAL++TF   R + + +R+  +R  V AVW +FD + +G I  +EF   +GL +TI A +  +
Sbjct:  129 KFAECVVCFDDMHKEACSVFLKNSKRICPHFLHYRCACDVMNSSRGGKHCPVCRRSFDSVRQVPSIDEDPEGWFEAVDLSGEGTLNQREVLEVLKAQLPLDAQRLEEGLPELWRNWDRAGDGVISKEEFLASDGLLACIRRDFYRDVEREARIPDVRENKEEWFDYWDYDKSGTLEQEEIVRALIKTF---RLSDDRSRIEQMRSVVSAVWGIFDPNNSGGIDKDEFVARDGLADTIAASMNLN 369          
BLAST of mRNA_H-akashiwo_Contig943.7.1 vs. uniprot
Match: A0A7S4KXK3_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KXK3_GUITH)

HSP 1 Score: 196 bits (499), Expect = 1.760e-57
Identity = 93/244 (38.11%), Postives = 145/244 (59.43%), Query Frame = 1
Query:   46 QLSECAICFENLFKHQTAAFKKSSQRTCRHFFHAECIEPLLQDRSREPRCPLCNASVDAIMTIPNPLEDPEGWFIAVDLDGNGELDQTEVCDVLEAQLPVDGKKLREEIHNCWSIWDPNGSGRIDRRELLGDNGLMRFAQANW--PFQRE-RPPDIRTAPMAWFNFWDDDNSHNLDKDEVARALVRTFAAGRGAVELARLRALRETVDAVWPLFDEDGNGTISAEEFCRENGLGETIVAQIRFS 768
            + +EC +CF+++ K   + F K+S+R C HF H  C   ++        CP+C  S D++  +P+  EDPEGWF AVDL G G L+Q EV +VL+AQLP+D ++L E +   W  WD  G G I + E L  +GL+   + ++    +RE R PD+R     WF++WD D S  L+++E+ RAL++TF   R + + +R+  +R  V AVW +FD + +G I  +EF   +GL +TI A +  +
Sbjct:  134 KFAECVVCFDDMHKEACSVFLKNSKRICPHFLHYRCACDVMNSSRGGKHCPVCRRSFDSVRQVPSIDEDPEGWFEAVDLSGEGTLNQREVLEVLKAQLPLDAQRLEEGLPELWRNWDRAGDGVISKEEFLASDGLLACIRRDFYRDVEREARIPDVRENKEEWFDYWDYDKSGTLEQEEIVRALIKTF---RLSDDRSRIEQMRSVVSAVWGIFDPNNSGGIDKDEFVARDGLADTIAASMNLN 374          
BLAST of mRNA_H-akashiwo_Contig943.7.1 vs. uniprot
Match: A4S2X8_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S2X8_OSTLU)

HSP 1 Score: 188 bits (478), Expect = 1.130e-54
Identity = 91/237 (38.40%), Postives = 142/237 (59.92%), Query Frame = 1
Query:   55 ECAICFENLFKHQTAAF-KKSSQRTCRHFFHAECIEPLLQDRSREPRCPLCNASVDAIMTIPNPLEDPEGWFIAVDLDGNGELDQTEVCDVLEAQLPVDGKKLREEIHNCWSIWDPNGSGRIDRRELLGDNGLMRFAQANWP---FQRERPPDIRTAPMAWFNFWDDDNSHNLDKDEVARALVRTFAAGRGAVELARLRALRETVDAVWPLFDEDGNGTISAEEFCRENGLGETIVA 753
            EC  CFE L K +TA F  +S  RTC+HF H  C   + +       CP+C  +  +   +P P ED   WF   D+DGNG+LD+ +V  V+ AQ+PVD +K+ +++ + W+ WDP  SG + + +L+G +GL+ F    +P    + +  P + T   AWF FWD+D+S  L+KDEV RAL++TF       ++A ++ +R  V+++W +FD D +G I   EF  E+GLG++I+A
Sbjct:   89 ECGACFEPLCKERTAVFVDESGARTCKHFLHERCARAVCEHIGSV--CPICRTAFASARGVPFPTEDANEWFRLCDVDGNGKLDKEQVLTVIRAQIPVDWRKIDKDLGSLWARWDPESSGALGKAQLVGADGLLEFVSKKYPPRLREYKHVPHV-TDKRAWFKFWDEDDSGTLEKDEVVRALIKTFGIKD---DVAHIQDVRSMVESIWCVFDLDDSGGIDLTEFLLEDGLGDSIMA 319          
BLAST of mRNA_H-akashiwo_Contig943.7.1 vs. uniprot
Match: A0A7J6MPS5_PERCH (Uncharacterized protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MPS5_PERCH)

HSP 1 Score: 181 bits (460), Expect = 2.020e-52
Identity = 96/255 (37.65%), Postives = 150/255 (58.82%), Query Frame = 1
Query:   31 SSSCAQLSECAICFENLFKHQTAAF----KKSSQRTCRHFFHAECIEPLLQDRSREPRCPLCNASVDAIMTIPNPLEDPEGWFIAVDLDGNGELDQTEVCDVLEAQLPVDGKKLREEIHNCWSIWDPNGSGRIDRRELLGDNGLMRFAQANWPFQRERP---------PDIRTAPMAWFNFWDDDNSHNLDKDEVARALVRTFAAGRGAVELARLRALRETVDAVWPLFDEDGNGTISAEEFCRE-NGLGETIVA 753
            SS   + +ECAIC++ L     A          +R C H+FH +C++ +L    R+  CPLC     + +TIP+   DP+GWF AVDL+G+G+LD+ EV  VL++ LP++ ++L ++    +  WD +G G I  REL+G  GL+ F ++N  F+R            P++R    AWF +WD+D +  LD++EV RAL++TF   R +++  +    R  +DA+W  FD DG+GTI + EFCR  +GL +T +A
Sbjct:   57 SSKAEEHAECAICYDTLPGKANAPVCVLTGSDGRRVCPHYFHVDCVKYMLSAGQRQ--CPLCRTPYRSYLTIPDIDMDPQGWFKAVDLNGDGKLDKQEVMFVLKSTLPINHQRLEKDFDKLFRRWDVSGDGYIQYRELMGPGGLVSFVRSN--FRRNTKDLSQGMSGMPNLRENKSAWFKYWDEDGNGVLDREEVTRALIKTFGWQRDSLD--QNSTARMVIDALWCDFDTDGDGTIDSMEFCRSGSGLADTFLA 305          
BLAST of mRNA_H-akashiwo_Contig943.7.1 vs. uniprot
Match: C5LPT2_PERM5 (Uncharacterized protein n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LPT2_PERM5)

HSP 1 Score: 181 bits (459), Expect = 1.110e-51
Identity = 96/255 (37.65%), Postives = 150/255 (58.82%), Query Frame = 1
Query:   31 SSSCAQLSECAICFENLFKHQTAAF----KKSSQRTCRHFFHAECIEPLLQDRSREPRCPLCNASVDAIMTIPNPLEDPEGWFIAVDLDGNGELDQTEVCDVLEAQLPVDGKKLREEIHNCWSIWDPNGSGRIDRRELLGDNGLMRFAQANWPFQRERP---------PDIRTAPMAWFNFWDDDNSHNLDKDEVARALVRTFAAGRGAVELARLRALRETVDAVWPLFDEDGNGTISAEEFCR-ENGLGETIVA 753
            SS   + +ECA+C++ L     A         S+R C H+FH EC++ ++   S +  CPLC       + IP+  +DP+ WF AVDL+G+G+LD+ EV  VL++ LP++ ++L ++    +  WD +G G I  +EL+G  GL+ F + N  F+R            P +R+  +AWF +WD+D +  LDK+EV RAL++TFA  R ++E  +    R  +DA+W  FD DG+GTI + EFCR + GL +T +A
Sbjct:  108 SSKAEEHAECAVCYDTLPGKAEAPVCVLTGPDSRRVCPHYFHVECVKYMMS--SDQNSCPLCRTPYVYYLPIPDVDKDPQAWFRAVDLNGDGKLDKQEVMFVLKSTLPINYQRLEKDFDKLFRRWDTSGDGYIQYKELMGPTGLVNFVRKN--FRRGTKDLENGAGCMPSLRSNKVAWFEYWDEDRNGVLDKEEVTRALIKTFAWQRASLE--QNSTARMIIDALWSDFDVDGDGTIDSREFCRSDTGLADTFLA 356          
BLAST of mRNA_H-akashiwo_Contig943.7.1 vs. uniprot
Match: A0A7J6LDZ5_PEROL (Uncharacterized protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LDZ5_PEROL)

HSP 1 Score: 175 bits (444), Expect = 1.280e-50
Identity = 92/247 (37.25%), Postives = 141/247 (57.09%), Query Frame = 1
Query:   55 ECAICFENLFKHQTAAF----KKSSQRTCRHFFHAECIEPLLQDRSREPRCPLCNASVDAIMTIPNPLEDPEGWFIAVDLDGNGELDQTEVCDVLEAQLPVDGKKLREEIHNCWSIWDPNGSGRIDRRELLGDNGLMRFAQANWPFQRERP---------PDIRTAPMAWFNFWDDDNSHNLDKDEVARALVRTFAAGRGAVELARLRALRETVDAVWPLFDEDGNGTISAEEFCRE-NGLGETIVA 753
            ECA+C++ L     A          +R C H+FH +C+  +L   S +  CPLC       + IP+  +DP+ WF AVDL+G+G+LD+ EV  VL++ LP++ ++L ++    +  WD +G G I  REL+G  GL+ F ++N  F+R            P +R     WF +WD+D +  LDK+EV RAL++TF   R ++E  +    R  +DA+W  FD DG+GTI + EFCR  +GL +T +A
Sbjct:   15 ECAVCYDALPGKVNAPVCVLTGPDGRRVCPHYFHVDCVNYMLS--SGQNLCPLCRTPYRGYLPIPDIDQDPKAWFRAVDLNGDGKLDKQEVMFVLKSTLPINYQRLEKDFDKLFRRWDASGDGYIQYRELMGPGGLVNFVRSN--FRRNTKDLAGAVGAMPSLRNDKAGWFKYWDEDGNGVLDKEEVTRALIKTFRWQRDSLE--QNSTARMVIDALWSDFDTDGDGTIDSREFCRSGSGLADTFLA 255          
BLAST of mRNA_H-akashiwo_Contig943.7.1 vs. uniprot
Match: C1MUQ4_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MUQ4_MICPC)

HSP 1 Score: 180 bits (456), Expect = 1.610e-50
Identity = 104/322 (32.30%), Postives = 145/322 (45.03%), Query Frame = 1
Query:    1 PPDLAAAHTQSSSCAQLSECAICFENLFKHQTAAFKKSSQ-RTCRHFFHAECIEPLLQDRSREPRCPLCNASVDAIMTIPNPLEDPEGWFIAVDLDGNGELDQTEVCDVLEAQLPVDGKKLREEIHNCWSIWDPNGSGRIDRRELLGDNGLMRFAQANWP----------------------------------------------------------------------FQRERPPDIRTAPMAWFNFWDDDNSHNLDKDEVARALVRTFAAGRGAVELARLRALRETVDAVWPLFDEDGNGTISAEEFCRENGLGETIVA 753
            P  +A   +  S   +  ECA+CFE L    TA F  S + R C HFFH EC   L +    + +CP C AS   ++ +P+P E+P GWF A D+DG+G L + EV +VL AQL  D + +  E+   W  WD NG G ++R E++   GL+ +   ++                                                                        ++   P I   P AWF FWD D+S  LDK+EV RAL++TF  GR  V  A+   +R  V+A W LFD DG+G++   EF   +GL ETIVA
Sbjct:   95 PRRIARQKSNKSVAEEFGECAVCFEALCSAPTAVFVASERHRVCAHFFHVECAGELAK---HDKKCPTCRASFARVLPVPSPRENPNGWFAACDVDGDGRLSKAEVLEVLRAQLKCDWRAIERELPTLWPQWDVNGDGYVERHEMMKRGGLLDYVSKSFAKAKSVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREERQKRAEAAHHSTSGSHGIHRDDDRRRRHRKREVPSIVNDPTAWFAFWDFDDSGALDKEEVVRALIKTFKLGRDDVRKAQ--DMRAVVNATWGLFDPDGSGSVDRREFLMRDGLAETIVA 411          
BLAST of mRNA_H-akashiwo_Contig943.7.1 vs. uniprot
Match: A0A7J6PL15_PEROL (Uncharacterized protein n=8 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6PL15_PEROL)

HSP 1 Score: 177 bits (449), Expect = 3.430e-50
Identity = 94/255 (36.86%), Postives = 144/255 (56.47%), Query Frame = 1
Query:   31 SSSCAQLSECAICFENLFKHQTAAF----KKSSQRTCRHFFHAECIEPLLQDRSREPRCPLCNASVDAIMTIPNPLEDPEGWFIAVDLDGNGELDQTEVCDVLEAQLPVDGKKLREEIHNCWSIWDPNGSGRIDRRELLGDNGLMRFAQANWPFQRERP---------PDIRTAPMAWFNFWDDDNSHNLDKDEVARALVRTFAAGRGAVELARLRALRETVDAVWPLFDEDGNGTISAEEFCRE-NGLGETIVA 753
            SS   + +ECA+C++ L     A          +R C H+FH  C+  +L   S +  CPLC       + IP+  +DP+ WF AVDL+G+G+LD+ EV  VL++ LP++ ++L ++    +  WD +G G I  REL+G  GL+ F ++N  F+R            P +R     WF +WD+D +  LDK+EV RAL++TF   R ++E  +    R  +DA+W  FD DG+GTI + EFCR  +GL +T +A
Sbjct:  108 SSKAEEHAECAVCYDTLPGRANAPVCVLTGPDGRRVCPHYFHVACVNYMLS--SGQNLCPLCRTPYRGYLPIPDIDKDPKAWFRAVDLNGDGKLDKQEVMFVLKSTLPINYQRLEKDFDKLFGRWDASGDGYIQYRELMGPGGLVNFVRSN--FRRNTKDLAGAVGAMPSLRNDKAGWFKYWDEDGNGVLDKEEVTRALIKTFGWQRDSLE--QNSTARMVIDALWSDFDTDGDGTIDSREFCRSGSGLADTFLA 356          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig943.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y697_HETAK4.810e-7190.52Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
C1E6Q1_MICCC1.080e-6240.00Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S4KXW1_GUITH1.550e-5738.11Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A7S4KXK3_GUITH1.760e-5738.11Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A4S2X8_OSTLU1.130e-5438.40Uncharacterized protein n=2 Tax=Ostreococcus sp. '... [more]
A0A7J6MPS5_PERCH2.020e-5237.65Uncharacterized protein n=1 Tax=Perkinsus chesapea... [more]
C5LPT2_PERM51.110e-5137.65Uncharacterized protein n=2 Tax=Perkinsus marinus ... [more]
A0A7J6LDZ5_PEROL1.280e-5037.25Uncharacterized protein n=2 Tax=Perkinsus olseni T... [more]
C1MUQ4_MICPC1.610e-5032.30Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7J6PL15_PEROL3.430e-5036.86Uncharacterized protein n=8 Tax=Perkinsus olseni T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig943contigH-akashiwo_Contig943:321018..322416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog296587.XP_002502215.1
PFAMsEF-hand_5,zf-RING_2
Model size771
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.76e-63
EggNOG OGs2BZS4@1|root,2S2K6@2759|Eukaryota
Cds size771
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388052.9073138-CDS-H-akashiwo_Contig943:321017..3211781681388052.9073138-CDS-H-akashiwo_Contig943:321017..321178Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig943 321018..321178 -
1681388052.9284608-CDS-H-akashiwo_Contig943:321205..3215551681388052.9284608-CDS-H-akashiwo_Contig943:321205..321555Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig943 321206..321555 -
1681388052.9389207-CDS-H-akashiwo_Contig943:322156..3224161681388052.9389207-CDS-H-akashiwo_Contig943:322156..322416Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig943 322157..322416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig943.7.1prot_H-akashiwo_Contig943.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig943 321018..322416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig943.7.1

>prot_H-akashiwo_Contig943.7.1 ID=prot_H-akashiwo_Contig943.7.1|Name=mRNA_H-akashiwo_Contig943.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=257bp
PPDLAAAHTQSSSCAQLSECAICFENLFKHQTAAFKKSSQRTCRHFFHAE
CIEPLLQDRSREPRCPLCNASVDAIMTIPNPLEDPEGWFIAVDLDGNGEL
DQTEVCDVLEAQLPVDGKKLREEIHNCWSIWDPNGSGRIDRRELLGDNGL
MRFAQANWPFQRERPPDIRTAPMAWFNFWDDDNSHNLDKDEVARALVRTF
AAGRGAVELARLRALRETVDAVWPLFDEDGNGTISAEEFCRENGLGETIV
AQIRFS*
back to top

mRNA from alignment at H-akashiwo_Contig943:321018..322416-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig943.7.1 ID=mRNA_H-akashiwo_Contig943.7.1|Name=mRNA_H-akashiwo_Contig943.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1399bp|location=Sequence derived from alignment at H-akashiwo_Contig943:321018..322416- (Heterosigma akashiwo CCMP452)
CCGCCAGATCTAGCTGCCGCACACACACAATCATCCTCGTGTGCACAACT TAGTGAATGCGCAATATGTTTTGAAAACCTGTTTAAGCATCAGACTGCCG CCTTCAAAAAGTCAAGCCAGCGGACATGCCGACACTTCTTTCACGCCGAA TGCATTGAGCCTTTGCTCCAAGACAGAAGCCGAGAGCCCCGGTGCCCACT CTGCAATGCCAGTGTGGATGCCATCATGACAATCCCAAATCCCCTAGAAG ATCCAGAAGGGTGAGTGGCAAGTAGATTAAAAAATGAGTTTGTGTAAGTG GTTTTGAACTACTTGTCTCACCGTCCAAGTATGCTGTCACTTCAAATGTT CCTAAAAGGGACTTTATTTAGTTACCAAAAAAAAAATTATACATTATATG TATTGAAATGACAGTGATCACTGGTGGTACGGAACTAATGTAGTTATCCA GAAGGCTAGACCTCAAATAAATCAAAGTCGTCATCATCATCATCATCATG CCAAATACAGATATGTAATCTTGATTCCCGTACATCTCACTTTGTATAGC AGTTTCGATTGGTTCACTTGTTTTGACAGTCAGTTGTGCTGATGGTTGGT GGGCACCACCAGCCTATCTATGAAATGCGGCGTCTGTACAATACCAGATC TGATAAAATTTTATTAAAAACCTTTGTTGTTGAACAATTCTGTGTACACC TGCTCCTGATCTTTTGCTGATCTCCTCTAGTATTCCTGGACTATCAAACA ATTTAATATTTTTGTTGGAAAGGGCAAGAATTGGCCCATACCATAGACTT CTGAGCAAGAACTGGTAAACCGTTCCTTTTATGCAGTTCTGCACTTCTTT TACTGTAACAGGTGGTTTATAGCAGTGGATCTTGATGGGAACGGAGAACT CGACCAAACCGAAGTTTGCGATGTCCTGGAGGCGCAATTGCCTGTGGATG GCAAGAAGCTGAGGGAGGAGATCCACAACTGCTGGTCCATCTGGGACCCA AATGGGAGCGGCCGCATTGACCGGCGTGAGCTGCTGGGTGACAATGGTCT GATGAGGTTTGCGCAGGCCAACTGGCCCTTTCAGCGCGAGCGGCCGCCGG ACATTCGGACTGCCCCCATGGCTTGGTTCAACTTCTGGGACGACGACAAC AGCCACAACCTGGACAAGGACGAGGTTGCTCGCGCACTGGTGCGCACCTT TGCGGCGGGCAGTGGTGGCGGGGGCGGCGCCGCGACAGGGGGAGCGGTGG AGCTGGCGCGTCTGCGCGCGCTGCGCGAGACGGTCGATGCGGTGTGGCCG CTGTTTGACGAGGATGGGAATGGGACGATTTCGGCGGAAGAGTTCTGCCG GGAGAATGGGCTGGGGGAGACAATCGTTGCACAGATCCGGTTCTCTTGA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig943:321018..322416-

>mRNA_H-akashiwo_Contig943.7.1 ID=mRNA_H-akashiwo_Contig943.7.1|Name=mRNA_H-akashiwo_Contig943.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=771bp|location=Sequence derived from alignment at H-akashiwo_Contig943:321018..322416- (Heterosigma akashiwo CCMP452)
CCGCCAGATCTAGCTGCCGCACACACACAATCATCCTCGTGTGCACAACT
TAGTGAATGCGCAATATGTTTTGAAAACCTGTTTAAGCATCAGACTGCCG
CCTTCAAAAAGTCAAGCCAGCGGACATGCCGACACTTCTTTCACGCCGAA
TGCATTGAGCCTTTGCTCCAAGACAGAAGCCGAGAGCCCCGGTGCCCACT
CTGCAATGCCAGTGTGGATGCCATCATGACAATCCCAAATCCCCTAGAAG
ATCCAGAAGGGTGGTTTATAGCAGTGGATCTTGATGGGAACGGAGAACTC
GACCAAACCGAAGTTTGCGATGTCCTGGAGGCGCAATTGCCTGTGGATGG
CAAGAAGCTGAGGGAGGAGATCCACAACTGCTGGTCCATCTGGGACCCAA
ATGGGAGCGGCCGCATTGACCGGCGTGAGCTGCTGGGTGACAATGGTCTG
ATGAGGTTTGCGCAGGCCAACTGGCCCTTTCAGCGCGAGCGGCCGCCGGA
CATTCGGACTGCCCCCATGGCTTGGTTCAACTTCTGGGACGACGACAACA
GCCACAACCTGGACAAGGACGAGGTTGCTCGCGCACTGGTGCGCACCTTT
GCGGCGGGCAGGGGAGCGGTGGAGCTGGCGCGTCTGCGCGCGCTGCGCGA
GACGGTCGATGCGGTGTGGCCGCTGTTTGACGAGGATGGGAATGGGACGA
TTTCGGCGGAAGAGTTCTGCCGGGAGAATGGGCTGGGGGAGACAATCGTT
GCACAGATCCGGTTCTCTTGA
back to top