mRNA_H-akashiwo_Contig943.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig943.5.1
Unique NamemRNA_H-akashiwo_Contig943.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig943.5.1 vs. uniprot
Match: A0A6V3BZB1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3BZB1_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 2.380e-20
Identity = 42/71 (59.15%), Postives = 48/71 (67.61%), Query Frame = 2
Query:   17 VLLQWVEDGAE-----FNAGEWKRAINPRNTPWQINGCDCGVFVCATAEWLSEGSPFTFVETHMPHLRQRM 214
            VL +W++D A      F+  EW   INP NTP Q NG DCGVFVC TAEWLSEGS  TF +  MPHLR+RM
Sbjct:  178 VLCKWIKDEANSKGHVFDINEWTTTINPENTPEQTNGFDCGVFVCTTAEWLSEGSDLTFSQEDMPHLRKRM 248          
BLAST of mRNA_H-akashiwo_Contig943.5.1 vs. uniprot
Match: UPI000C055259 (sentrin-specific protease 1-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C055259)

HSP 1 Score: 67.8 bits (164), Expect = 1.390e-11
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 2
Query:   50 FNAGEWKRAINPRNTPWQINGCDCGVFVCATAEWLSEGSPFTFVETHMPHLRQRM 214
            F++  WK  ++P++ P Q+NGCDCGVF C  AE+LS  +PF F + HMP+ R+RM
Sbjct:  468 FDSTGWK-TVSPKDIPEQLNGCDCGVFACKYAEYLSRRAPFDFDQRHMPYFRRRM 521          
BLAST of mRNA_H-akashiwo_Contig943.5.1 vs. uniprot
Match: A0A7K4SWX6_9CHAR (SENP2 protease (Fragment) n=1 Tax=Burhinus bistriatus TaxID=240201 RepID=A0A7K4SWX6_9CHAR)

HSP 1 Score: 66.2 bits (160), Expect = 1.570e-11
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 2
Query:   47 EFNAGEWK-RAINPRNTPWQINGCDCGVFVCATAEWLSEGSPFTFVETHMPHLRQRM 214
            E N  EW   ++ P   P Q+NG DCGVFVC  A+++S G P  F +THMP+ R++M
Sbjct:  154 ELNISEWTLHSMGPHEIPQQLNGSDCGVFVCKFADYISRGKPMNFSQTHMPYFRKKM 210          
BLAST of mRNA_H-akashiwo_Contig943.5.1 vs. uniprot
Match: A0A0X3PIM3_SCHSO (ULP_PROTEASE domain-containing protein n=3 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3PIM3_SCHSO)

HSP 1 Score: 65.9 bits (159), Expect = 6.560e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 2
Query:   62 EWKRAINPRNT-PWQINGCDCGVFVCATAEWLSEGSPFTFVETHMPHLRQRM 214
            +WK+ IN RN+ P Q NGCDCGVF+C  AE+LS G+ FTF +  MP +RQRM
Sbjct:  390 KWKK-INTRNSVPQQENGCDCGVFLCTFAEFLSRGAEFTFSQADMPQIRQRM 440          
BLAST of mRNA_H-akashiwo_Contig943.5.1 vs. uniprot
Match: UPI00077A3E5D (sentrin-specific protease 1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A3E5D)

HSP 1 Score: 64.3 bits (155), Expect = 8.000e-11
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 2
Query:   50 FNAGEWKRAINPRNTPWQINGCDCGVFVCATAEWLSEGSPFTFVETHMPHLRQRM 214
            F+  EWK A  P++ P Q+NGCDCGVF C  AE+LS G+ F F +  +P+ R+RM
Sbjct:  153 FDLSEWKLAA-PKDIPEQLNGCDCGVFACKYAEYLSRGAKFDFDQRDIPYFRRRM 206          
BLAST of mRNA_H-akashiwo_Contig943.5.1 vs. uniprot
Match: A0A7M3Q682_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3Q682_SPIER)

HSP 1 Score: 65.5 bits (158), Expect = 9.070e-11
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 2
Query:   62 EWKRAINPRNTPWQINGCDCGVFVCATAEWLSEGSPFTFVETHMPHLRQRM 214
            +WK+     + P Q NGCDCGVF+C  AE+LS G+ FTF +  MP +RQRM
Sbjct:  467 KWKKINTKNSVPQQENGCDCGVFLCTFAEFLSRGAEFTFSQADMPQIRQRM 517          
BLAST of mRNA_H-akashiwo_Contig943.5.1 vs. uniprot
Match: A0A0B6Z4U0_9EUPU (ULP_PROTEASE domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6Z4U0_9EUPU)

HSP 1 Score: 65.5 bits (158), Expect = 9.150e-11
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 2
Query:   20 LLQWVEDGA------EFNAGEWKRAINPRNTPWQINGCDCGVFVCATAEWLSEGSPFTFVETHMPHLRQRM 214
            +LQ++ D +       FN  EWK+ +N  + P Q+NG DCG+F+C  AE+++ G   TF + HMP+ R+RM
Sbjct:  607 VLQYIHDESIAKSYTAFNRNEWKQ-VNAEDNPQQMNGGDCGMFMCMYAEYITRGKEITFTQEHMPYFRRRM 676          
BLAST of mRNA_H-akashiwo_Contig943.5.1 vs. uniprot
Match: UPI001CF34DF7 (LOW QUALITY PROTEIN: sentrin-specific protease 1-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF34DF7)

HSP 1 Score: 64.3 bits (155), Expect = 2.340e-10
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 2
Query:   50 FNAGEWKRAINPRNTPWQINGCDCGVFVCATAEWLSEGSPFTFVETHMPHLRQRM 214
            F+  EWK A  P++ P Q+NGCDCGVF C  AE+LS G+ F F +  +P+ R+RM
Sbjct:  617 FDLSEWKLAA-PKDIPEQLNGCDCGVFACKYAEYLSRGAKFDFDQRDIPYFRRRM 670          
BLAST of mRNA_H-akashiwo_Contig943.5.1 vs. uniprot
Match: A0A7L1HA08_9CHAR (SENP2 protease (Fragment) n=1 Tax=Nycticryphes semicollaris TaxID=227226 RepID=A0A7L1HA08_9CHAR)

HSP 1 Score: 63.2 bits (152), Expect = 2.500e-10
Identity = 27/78 (34.62%), Postives = 48/78 (61.54%), Query Frame = 2
Query:    2 DYLQVVLLQWVEDGA------EFNAGEWK-RAINPRNTPWQINGCDCGVFVCATAEWLSEGSPFTFVETHMPHLRQRM 214
            DY+  +LL+++++ +      + +  EW   ++ P   P Q+NG DCGVFVC  A+++S   P  F++ HMP+ R++M
Sbjct:  140 DYICQILLKYLQEESSEKRNMKMDISEWSVHSMEPHEIPQQLNGSDCGVFVCKYADYVSRDRPMNFMQAHMPYFRKKM 217          
BLAST of mRNA_H-akashiwo_Contig943.5.1 vs. uniprot
Match: A0A7L0DNB3_9CHAR (SENP2 protease (Fragment) n=1 Tax=Rostratula benghalensis TaxID=118793 RepID=A0A7L0DNB3_9CHAR)

HSP 1 Score: 62.8 bits (151), Expect = 3.490e-10
Identity = 26/78 (33.33%), Postives = 48/78 (61.54%), Query Frame = 2
Query:    2 DYLQVVLLQWVED------GAEFNAGEWK-RAINPRNTPWQINGCDCGVFVCATAEWLSEGSPFTFVETHMPHLRQRM 214
            DY+  +LL+++++        + +  EW   ++ P   P Q+NG DCG+F+C  A+++S   P  F++THMP+ R++M
Sbjct:  140 DYVCQLLLKYLQEESREKRNVKVDISEWSIHSMAPHEIPQQLNGSDCGIFICKYADYISRDKPMDFLQTHMPYFRKKM 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig943.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V3BZB1_HETAK2.380e-2059.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI000C0552591.390e-1150.91sentrin-specific protease 1-like n=1 Tax=Stylophor... [more]
A0A7K4SWX6_9CHAR1.570e-1147.37SENP2 protease (Fragment) n=1 Tax=Burhinus bistria... [more]
A0A0X3PIM3_SCHSO6.560e-1159.62ULP_PROTEASE domain-containing protein n=3 Tax=Sch... [more]
UPI00077A3E5D8.000e-1150.91sentrin-specific protease 1-like n=1 Tax=Acropora ... [more]
A0A7M3Q682_SPIER9.070e-1152.94Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A0B6Z4U0_9EUPU9.150e-1140.85ULP_PROTEASE domain-containing protein n=1 Tax=Ari... [more]
UPI001CF34DF72.340e-1050.91LOW QUALITY PROTEIN: sentrin-specific protease 1-l... [more]
A0A7L1HA08_9CHAR2.500e-1034.62SENP2 protease (Fragment) n=1 Tax=Nycticryphes sem... [more]
A0A7L0DNB3_9CHAR3.490e-1033.33SENP2 protease (Fragment) n=1 Tax=Rostratula bengh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig943contigH-akashiwo_Contig943:269313..269883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size218
Hectar predicted targeting categoryother localisation
Exons3
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388052.8447978-CDS-H-akashiwo_Contig943:269312..2694231681388052.8447978-CDS-H-akashiwo_Contig943:269312..269423Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig943 269313..269423 +
1681388052.858245-CDS-H-akashiwo_Contig943:269660..2697331681388052.858245-CDS-H-akashiwo_Contig943:269660..269733Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig943 269661..269733 +
1681388052.8679123-CDS-H-akashiwo_Contig943:269849..2698811681388052.8679123-CDS-H-akashiwo_Contig943:269849..269881Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig943 269850..269881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig943.5.1prot_H-akashiwo_Contig943.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig943 269313..269881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig943.5.1

>prot_H-akashiwo_Contig943.5.1 ID=prot_H-akashiwo_Contig943.5.1|Name=mRNA_H-akashiwo_Contig943.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=72bp
GLSAGGLAAVGRGWSGVQRWGMETSHQPKEYSLANQWLRLRRFCLRHGGV
AERGLPVHLCGDPHAAFEAAHG
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mRNA from alignment at H-akashiwo_Contig943:269313..269883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig943.5.1 ID=mRNA_H-akashiwo_Contig943.5.1|Name=mRNA_H-akashiwo_Contig943.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=571bp|location=Sequence derived from alignment at H-akashiwo_Contig943:269313..269883+ (Heterosigma akashiwo CCMP452)
GGATTATCTGCAGGTGGTCTTGCTGCAGTGGGTAGAGGATGGAGCGGAGT TCAACGCTGGGGAATGGAAACGAGCCATCAACCCAAGGAATACTCCCTGG CAAATCAATGGGTAACTGAATTGTTTGCTCTCTGTGAATCGGGGTGTGTG TGAGGGGGGAGCGGGGTAGAAAGGGGGGGGGAGCGAGAAGAAGGGGGGGC GGAAATGTAGAGGGGCAGGAGTGGGAAAAGGCCAAGATCATCAACGCCTG GACACGGAAAGCAAAGAATAGTAAGAGTGTATGCTTGCAGGTCACCTCTT CTTCTTCTTCTATTTCACCACGGCTTACTGGTTTGCTTGGATGCACAGCT GCGACTGCGGCGTTTTTGTCTGCGCCACGGCGGAGTGGCTGAGCGAGGGC TCCCCGTTCACCTTTGTGGAGGTGAGTTTTTACCCCACCCACACAACAAG CTGCTACATGAGGTTACTGTTACCCCATTTTTTAAAAAACCAATATCACT CTTCCCCCTTCTCCTCTCCTCCTCCGCCCCACCCCAGACCCACATGCCGC ATTTGAGGCAGCGCATGGCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig943:269313..269883+

>mRNA_H-akashiwo_Contig943.5.1 ID=mRNA_H-akashiwo_Contig943.5.1|Name=mRNA_H-akashiwo_Contig943.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=216bp|location=Sequence derived from alignment at H-akashiwo_Contig943:269313..269883+ (Heterosigma akashiwo CCMP452)
GGATTATCTGCAGGTGGTCTTGCTGCAGTGGGTAGAGGATGGAGCGGAGT
TCAACGCTGGGGAATGGAAACGAGCCATCAACCCAAGGAATACTCCCTGG
CAAATCAATGGCTGCGACTGCGGCGTTTTTGTCTGCGCCACGGCGGAGTG
GCTGAGCGAGGGCTCCCCGTTCACCTTTGTGGAGACCCACATGCCGCATT
TGAGGCAGCGCATGGC
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