mRNA_H-akashiwo_Contig941.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig941.9.1
Unique NamemRNA_H-akashiwo_Contig941.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig941.9.1 vs. uniprot
Match: A0A7S3Y5V7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5V7_HETAK)

HSP 1 Score: 115 bits (288), Expect = 1.390e-28
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 2 
Query:    2 QIAICIIYPLPKLINVFLLMLVGIFIWATVGHLVFAGVDYGSSFANFDNLLAALQLMVVCT 184
            QI ICIIYPLPKLINVFLLMLVGIFIWATVGHLVFAGVDYGSSFANFDNLL ALQLMVVCT
Sbjct:  334 QITICIIYPLPKLINVFLLMLVGIFIWATVGHLVFAGVDYGSSFANFDNLLMALQLMVVCT 394
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig941.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y5V7_HETAK1.390e-2896.72Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig941contigH-akashiwo_Contig941:309787..310140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size189
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388052.5270832-CDS-H-akashiwo_Contig941:309788..3099101681388052.5270832-CDS-H-akashiwo_Contig941:309788..309910Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig941 309789..309910 -
1681388052.5393155-CDS-H-akashiwo_Contig941:310076..3101401681388052.5393155-CDS-H-akashiwo_Contig941:310076..310140Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig941 310077..310140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig941.9.1prot_H-akashiwo_Contig941.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig941 309789..310140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig941.9.1

>prot_H-akashiwo_Contig941.9.1 ID=prot_H-akashiwo_Contig941.9.1|Name=mRNA_H-akashiwo_Contig941.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=62bp
PDRDLHHLPAAQADQRVPAHAGWHLHLGDGWPSGVCRGGLRVVLCQLRQP
FGGPPADGGLHQ
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mRNA from alignment at H-akashiwo_Contig941:309787..310140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig941.9.1 ID=mRNA_H-akashiwo_Contig941.9.1|Name=mRNA_H-akashiwo_Contig941.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=354bp|location=Sequence derived from alignment at H-akashiwo_Contig941:309787..310140- (Heterosigma akashiwo CCMP452)
CCAGATCGCGATCTGCATCATCTACCCGCTGCCCAAGCTGATCAACGTGT
TCCTGCTCATGCTGGTGAGGGCGCGGCCCGTGGTTGTGTGTTTTGGGTGG
TGGGCGGCTGCGGTGCAAAAGAGCCCTGCCAGTCTGCGGGTGCCGTTCTA
TGGTTGAGAACTGAATAAATTTCTCTTTGCATTATCACCCTGCATGTACA
CCGTCGTAAAATAATGTGTGTGAAAAAAAGGTTGGCATCTTCATCTGGGC
GACGGTTGGCCATCTGGTGTTTGCCGGGGTGGACTACGGGTCGTCCTTTG
CCAACTTCGACAACCTTTTGGCGGCCCTCCAGCTGATGGTGGTCTGCACC
AGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig941:309787..310140-

>mRNA_H-akashiwo_Contig941.9.1 ID=mRNA_H-akashiwo_Contig941.9.1|Name=mRNA_H-akashiwo_Contig941.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=186bp|location=Sequence derived from alignment at H-akashiwo_Contig941:309787..310140- (Heterosigma akashiwo CCMP452)
CCAGATCGCGATCTGCATCATCTACCCGCTGCCCAAGCTGATCAACGTGT
TCCTGCTCATGCTGGTTGGCATCTTCATCTGGGCGACGGTTGGCCATCTG
GTGTTTGCCGGGGTGGACTACGGGTCGTCCTTTGCCAACTTCGACAACCT
TTTGGCGGCCCTCCAGCTGATGGTGGTCTGCACCAG
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