mRNA_H-akashiwo_Contig941.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig941.8.1
Unique NamemRNA_H-akashiwo_Contig941.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig941.8.1 vs. uniprot
Match: A0A7S3Y5V7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5V7_HETAK)

HSP 1 Score: 178 bits (451), Expect = 4.360e-51
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    1 TGLLPPHRLTDLLLDLPEEIGVGPHDPYLYLVHLVDRLEAQPSYDYSFHRTLISICTIACYPDHLAPEMETSEDLFLLFRKAW 249
            TGLLPPHRLTDLLLDLPEEIGVGPHDPYLYLVHLVDRLEAQPSYDYSFHRTLISICTIACYPDHLAPEMETSEDLFLLFRKAW
Sbjct:  477 TGLLPPHRLTDLLLDLPEEIGVGPHDPYLYLVHLVDRLEAQPSYDYSFHRTLISICTIACYPDHLAPEMETSEDLFLLFRKAW 559
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BLAST of mRNA_H-akashiwo_Contig941.8.1 vs. uniprot
Match: A0A7S4DCM9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCM9_HETAK)

HSP 1 Score: 156 bits (395), Expect = 3.140e-46
Identity = 68/83 (81.93%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 TGLLPPHRLTDLLLDLPEEIGVGPHDPYLYLVHLVDRLEAQPSYDYSFHRTLISICTIACYPDHLAPEMETSEDLFLLFRKAW 249
            TG +PPH+LT LLLDLPEEIG+ PHDPYLYLVHLVD LEAQPSYDYSFH TLIS+C+IACYPDH+AP+METS+DL++LFRKAW
Sbjct:   55 TGQIPPHQLTSLLLDLPEEIGISPHDPYLYLVHLVDCLEAQPSYDYSFHHTLISVCSIACYPDHIAPDMETSQDLYMLFRKAW 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig941.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3Y5V7_HETAK4.360e-51100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DCM9_HETAK3.140e-4681.93Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig941contigH-akashiwo_Contig941:298188..301270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size253
Hectar predicted targeting categoryother localisation
Exons3
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388052.4599626-CDS-H-akashiwo_Contig941:298189..2982311681388052.4599626-CDS-H-akashiwo_Contig941:298189..298231Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig941 298190..298231 -
1681388052.474564-CDS-H-akashiwo_Contig941:298547..2986611681388052.474564-CDS-H-akashiwo_Contig941:298547..298661Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig941 298548..298661 -
1681388052.4987373-CDS-H-akashiwo_Contig941:301177..3012701681388052.4987373-CDS-H-akashiwo_Contig941:301177..301270Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig941 301178..301270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig941.8.1prot_H-akashiwo_Contig941.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig941 298190..301270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig941.8.1

>prot_H-akashiwo_Contig941.8.1 ID=prot_H-akashiwo_Contig941.8.1|Name=mRNA_H-akashiwo_Contig941.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=83bp
TGLLPPHRLTDLLLDLPEEIGVGPHDPYLYLVHLVDRLEAQPSYDYSFHR
TLISICTIACYPDHLAPEMETSEDLFLLFRKAW
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mRNA from alignment at H-akashiwo_Contig941:298188..301270-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig941.8.1 ID=mRNA_H-akashiwo_Contig941.8.1|Name=mRNA_H-akashiwo_Contig941.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3083bp|location=Sequence derived from alignment at H-akashiwo_Contig941:298188..301270- (Heterosigma akashiwo CCMP452)
ACGGGGCTGCTCCCCCCGCACCGGCTCACGGACCTGCTGCTGGACCTCCC
GGAGGAGATCGGGGTCGGCCCCCACGACCCCTACCTGTACCTGGTGAGCC
GGGCCCCCCCCCGCCTCCGCCCTCCTCCCCGTGCCCCGCCCTTCCCCGGC
GCTGTGCCCCGCCCCAACGCCCGCCTGAGCACCTGCGGCCGGCGGCAGGC
CTCCCTCGGCGCTCTGCTGGGATTTTCTTTGTGTGCTTCCTTTGTTGCTG
TGAAATGGTCTTGTACCCTTGTCCAGCATCATGTTATATGTAGGTGGTCT
TGTCCGATCTCTGGGAGGCCGAGGAGAAAACCAATCTGGTGTGGGGTGAT
GGTCACATCCGCCATGCAGTGTGTGGAGGAACTGTGGGTATAACCATCGT
CCATGACGATGTCCATGGGTAGGTTGGCCTTGCTGGGGGGAACTGGGCCA
ATGTTGCTGCAGCAGTCAGTAGTGCCGCTGCTGTTGATATATATTACTCC
TCGCCGAAGCGTTGTTGTTGTTATTCTACCAGTTTAGAGGGGGGGGTGTT
GACTTTCTATTTTTTAATTTGAAGAACACCACCCCCTCCTCTATTCGCTG
CTGTGAGCACGAGCGAACAGCAAGATGGTGTGATTTTGATGTTGAAAGTA
AAGTTTTACTTATGTATTTATTCTTCTCAGCTGAATCCAGAGTGGCTGAA
AACATGGATTGAGTTTTGTTGGATTGTATACAGTGACCTTATCAATATGC
TGTTTATTATTTTTATTAATCCAATTCTGTCGCAACAAACTCAACAACAA
CAAAATATGTTGAGCTATACAGCCCCTGCTGCACAGTCCCCACCTTAGTA
CAAATTCAGTCTGCCTGTCTCCCAATATGACAGGGTCAATCATGGCAGTA
TCCAAAATATTAGAACAGATCAGCGCAATGTTGAAGCAGCTTATAAACAT
CAACAAATATAATTATTAGTGAGGAATAGAGGGGGAAATAGCTGAACCTA
AAAATGGAAGGGTCTATTTCTGGAGGCTGGGGTCCGGTCCTTGTAGCCTC
AGAACCACTGGACCTCAAATAATTCCAGTCGAATAAATTATATACTAACT
CTATATATATGTTACAACCAAAGTTGAAATATGCTCAATTTTATAAAACT
ATGCGTGTTGGTTTTAAAACTTGGCCAACTTTTAAAACTAACACACGCAA
TTTTGTGTCAGTTTTATAAACTATGCTTGTTATTTTTGAAATTGAGCAGG
CGTATTTTTGAACCCCTTGCCAGTCCAATGAGGAGTCAGCAAGTTTCCTT
TGGATGGGTGCTTGAGGGTGTACAGACGCTTAGGTATGCAAAATGCCAGC
TCTTTAGGGGCCTCCTGGACAGAGTACTCAAAATCTGAGCCTTGCCGATC
CTCCCTCCGGCCAACGGGGTTACAGAGGGCTGAAGTTTTGCACAACTGGT
CCCCTTTGCACTCCTAAACATCCACCCAAAGGAAACCTGGTAGCTCCCCA
ATGGACCAGCAGAAGGTTGAAAAAAAAATGATTTAATTCAAACTTTTGTC
CAAGTTTTAAAACTACGCACAGTTTTAAAACTAACCACATTTCAACTTTG
AGTGCAACAGATTTTTTTTCATATGTTTGAGCAACCGTGCAAAATAAATC
CAATACACTACTGTTGTTTCGCACTCGTCGCCATATGTCTTTGGAGTTGT
TTTCTAAGTGGAGTGAAATTTTTGATGTGTTGTTGTTGATAAGGCACTTC
ATGGTTGATTTTGTTCCAAACTTGAGGAATTCTTACTCTCCAGCTTCTTT
TGTAAGTCTCCAGAGAGTTGCTGCTGTGAACGGGGGCTGGCCTCAGCTGG
TGGTGATGTGGTGGCGCCTTTGCAGCAGCAAGTCGTGCTGCTCCCCTAAG
AGGTGTTTGGGAGGGGTCCATGCACTCCGGTTTCAGCTCATTCACCTGCC
TGTGCCCTTCACCATCAAGCACTTTGACCAATAGACCAACTGCCGCCGCC
TCTCTTCTGCGCTCCAGTGGACACGGCAGGAGGGAGGGCTCTGGGTCATC
AAGAAGGGAGATGGCGCTCTGTTAGACTTTGTCTAGCATCCCAAGATTGG
TATTTGCTACCCCCAGTAGAGTAGCTTGCCATATTCAATTTTAGATCTCA
CAAAGGCTATGTAGGCCATTATGATGCCCTGGTTGTCCAGCAAGTGGGCC
ACCCTTCTGATAGCCCCAAGGCTCTTCCTCGCATCTGCTGCTGTTTGTTG
GACGTGAAGTGACCAATTGCCCTTGGGGTCAATGATGAACCCCAAAGCTT
TCAGCTGCTCCTTTTCCTCAACAGTGAAGCCGCCCATGCTCGATGGTCTG
TGCTTAGCCTTGGTTTTCTCGCGCTTGTTTGACTACTCAACAATATTATA
TACTAGATATCAATAACGAATAGTGTATAATGTATCTTTTATATGTGCTC
TTTTCATTTATAGGTTCATTAGTTTTATTTTCATATATATCTTTGATGTT
CCTCAAAATATGTGCATCTTTTTTCATATATCTTTCATACTTATAGCATT
AATGTATCTTTTACAACAACATTGATAAATTCAAATGATGTTCCTCAAAA
TGAAAAAAGGTTCACCTGGTGGATCGTCTGGAGGCTCAACCTTCATATGA
CTACAGCTTTCATCGAACACTGATCTCCATATGCACGATTGCCTGCTACC
CGGACCATCTGGCTCCGGAGATGGTGAGTACGATTATCGCTTACATATGA
CAAGAGGGAGAAAGTTGGTGTTGGCATTTACAGCTCCCACATGCCTAAAT
GCAGGTGTAGGGGCACGTTTGGGCATTGTATAGCAGCATGAACGTTGGAC
CAGAAAAGGTTGTCAAGAGTACCAGGATCTGTTGCTGACTGTGTTCACAG
TGTCATGATGGAGTGTGATGCCATTTGAGCATATGCCTCTCGAGCAACTG
ACACAGGCGGGATGGAGGGATGATCCCATGTAGGCCCCCAAGCCTTGCAC
TGATCTTGCCTTCTTGCTGTACTTCATATACTCTTTCAGGAGACCTCAGA
GGACCTGTTTTTGCTTTTCCGCAAGGCCTGGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig941:298188..301270-

>mRNA_H-akashiwo_Contig941.8.1 ID=mRNA_H-akashiwo_Contig941.8.1|Name=mRNA_H-akashiwo_Contig941.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=249bp|location=Sequence derived from alignment at H-akashiwo_Contig941:298188..301270- (Heterosigma akashiwo CCMP452)
ACGGGGCTGCTCCCCCCGCACCGGCTCACGGACCTGCTGCTGGACCTCCC
GGAGGAGATCGGGGTCGGCCCCCACGACCCCTACCTGTACCTGGTTCACC
TGGTGGATCGTCTGGAGGCTCAACCTTCATATGACTACAGCTTTCATCGA
ACACTGATCTCCATATGCACGATTGCCTGCTACCCGGACCATCTGGCTCC
GGAGATGGAGACCTCAGAGGACCTGTTTTTGCTTTTCCGCAAGGCCTGG
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