mRNA_H-akashiwo_Contig941.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig941.5.1
Unique NamemRNA_H-akashiwo_Contig941.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 123 bits (309), Expect = 3.870e-33
Identity = 55/73 (75.34%), Postives = 64/73 (87.67%), Query Frame = 1
Query:    1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQRSGYKSCLY 219
            LDISTAFLNG +  DVYVRQPP +VDP+HPNK  KLNKALYGLKQSP +WY++LHDHL S GF+RSG++SCLY
Sbjct:   36 LDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLY 108          
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 115 bits (289), Expect = 4.300e-29
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 1
Query:    1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQRSGYKSCLY 219
            LDISTAFLN DIDGDVYV+QPPGFVD +HP+K  KL KALYGL+QSP +WY  LH+ LL Q F RS Y+SCLY
Sbjct:  224 LDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLY 296          
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A7S3Y3C5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3C5_HETAK)

HSP 1 Score: 115 bits (289), Expect = 5.540e-29
Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 1
Query:    1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQRSGYKSCLY 219
            LDISTAFLN DIDGDVYV+QPPGFVD +HP+K  KL KALYGL+QSP +WY  LH+ LL Q F RS Y+SCLY
Sbjct:  295 LDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLY 367          
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A803QDY6_CANSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803QDY6_CANSA)

HSP 1 Score: 91.3 bits (225), Expect = 9.010e-20
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQ 192
            LD++ AFLNGD+  ++Y+ QPPGFVDPEHPNK  KL+KA+YGLKQ+P  W+ +L   LLS GFQ
Sbjct:  128 LDVNNAFLNGDLQEEIYMVQPPGFVDPEHPNKVCKLHKAIYGLKQAPRAWFEKLSSVLLSLGFQ 191          
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A699VSC0_TANCI (Gag-Pol polyprotein (Fragment) n=3 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699VSC0_TANCI)

HSP 1 Score: 83.6 bits (205), Expect = 1.060e-19
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQR 195
            +D+ TAFLNG +  +VYV QP GFVDP+HP K  +L KALYGLKQ+P  WY +L   L S+GF +
Sbjct:    1 MDVKTAFLNGPLKEEVYVAQPDGFVDPDHPKKVYRLRKALYGLKQAPRAWYDELSKFLTSKGFTK 65          
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: Q94EQ2_MAIZE (Reverse transcriptase (Fragment) n=2 Tax=Zea mays TaxID=4577 RepID=Q94EQ2_MAIZE)

HSP 1 Score: 83.6 bits (205), Expect = 2.300e-19
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    4 DISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQRSGYKSCLY 219
            D+ TAFL+GD++ D+Y+ QP GF+ P   +   +L K+LYGLKQSP  WY +    +LS GFQRS Y SC+Y
Sbjct:    3 DVKTAFLHGDLEEDIYMDQPEGFIVPGKEDYVCRLKKSLYGLKQSPRQWYKRFDSFMLSNGFQRSQYDSCVY 74          
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A6D2KD17_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KD17_9BRAS)

HSP 1 Score: 90.1 bits (222), Expect = 2.460e-19
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQRSGYKSCLY 219
            LD++ AFL G +D +VYV+QPPGFVDP+ P+   KL KALYGLKQ+P  WYL+L  +L+  GF+ S   +CL+
Sbjct:  905 LDVNNAFLQGTLDEEVYVKQPPGFVDPDRPDYVCKLRKALYGLKQAPRAWYLELKRYLVDVGFKNSLADTCLF 977          
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A699W388_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699W388_TANCI)

HSP 1 Score: 84.3 bits (207), Expect = 3.570e-19
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQRSGYKSCLY 219
            +D+ TAFLNG++  +VY+ QP GFVD ++PN   KL KALYGLKQ+PH WY  L   LLSQ F +      L+
Sbjct:   28 MDVKTAFLNGNLQEEVYIGQPDGFVDSDNPNHVYKLKKALYGLKQAPHAWYDMLSSFLLSQDFSKGSVNPTLF 100          
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A392T0D7_9FABA (Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392T0D7_9FABA)

HSP 1 Score: 82.4 bits (202), Expect = 3.640e-19
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQRSG 201
            +D+ +AFLNG +  +VYV QP GF+DP HP+   KL KA YGLKQ+P  WY +L + L+SQG+++ G
Sbjct:    1 MDVKSAFLNGYLHEEVYVEQPKGFIDPNHPDHVYKLKKAQYGLKQAPRAWYERLTEFLVSQGYRKGG 67          
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A699R5A0_TANCI (Gag-Pol polyprotein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699R5A0_TANCI)

HSP 1 Score: 82.0 bits (201), Expect = 4.310e-19
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQR 195
            +D+ TAFLNG ++ +VYV QP GFVDP+HP K  +L KALYGLK++P  WY +L   L S+GF +
Sbjct:    1 MDVKTAFLNGPLNEEVYVAQPDGFVDPDHPEKVYRLRKALYGLKKAPREWYDELSTFLTSKGFTK 65          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y6S2_HETAK3.870e-3375.34Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y3B6_HETAK4.300e-2972.60Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A7S3Y3C5_HETAK5.540e-2972.60Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A803QDY6_CANSA9.010e-2062.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A699VSC0_TANCI1.060e-1956.92Gag-Pol polyprotein (Fragment) n=3 Tax=Tanacetum c... [more]
Q94EQ2_MAIZE2.300e-1951.39Reverse transcriptase (Fragment) n=2 Tax=Zea mays ... [more]
A0A6D2KD17_9BRAS2.460e-1954.79Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A699W388_TANCI3.570e-1952.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A392T0D7_9FABA3.640e-1952.24Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium m... [more]
A0A699R5A0_TANCI4.310e-1955.38Gag-Pol polyprotein (Fragment) n=1 Tax=Tanacetum c... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig941contigH-akashiwo_Contig941:149288..149515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7425.NV30294-PA
PFAMsRVT_2,Retrotran_gag_2,rve
Model size228
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.09e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3E4E9@33213|Bilateria
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size102
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388052.619288-CDS-H-akashiwo_Contig941:149287..1493891681388052.619288-CDS-H-akashiwo_Contig941:149287..149389Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig941 149288..149389 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388052.6307292-UTR-H-akashiwo_Contig941:149389..1495151681388052.6307292-UTR-H-akashiwo_Contig941:149389..149515Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig941 149390..149515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig941.5.1prot_H-akashiwo_Contig941.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig941 149288..149389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig941.5.1

>prot_H-akashiwo_Contig941.5.1 ID=prot_H-akashiwo_Contig941.5.1|Name=mRNA_H-akashiwo_Contig941.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=34bp
LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*
back to top

mRNA from alignment at H-akashiwo_Contig941:149288..149515+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig941.5.1 ID=mRNA_H-akashiwo_Contig941.5.1|Name=mRNA_H-akashiwo_Contig941.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=228bp|location=Sequence derived from alignment at H-akashiwo_Contig941:149288..149515+ (Heterosigma akashiwo CCMP452)
CTGGACATCAGTACTGCGTTTCTGAATGGCGATATTGATGGTGATGTCTA CGTTCGCCAGCCCCCTGGTTTTGTCGATCCTGAGCACCCGAACAAGTTTT GAAAGCTTAACAAGGCTCTGTATGGGTTAAAGCAGAGCCCACACATATGG TACTTGCAGCTGCATGATCATCTCCTGTCTCAGGGCTTCCAGCGCAGTGG CTACAAGTCCTGTTTGTATGAGTCTTGG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig941:149288..149515+

>mRNA_H-akashiwo_Contig941.5.1 ID=mRNA_H-akashiwo_Contig941.5.1|Name=mRNA_H-akashiwo_Contig941.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=102bp|location=Sequence derived from alignment at H-akashiwo_Contig941:149288..149515+ (Heterosigma akashiwo CCMP452)
CTGGACATCAGTACTGCGTTTCTGAATGGCGATATTGATGGTGATGTCTA
CGTTCGCCAGCCCCCTGGTTTTGTCGATCCTGAGCACCCGAACAAGTTTT
GA
back to top