mRNA_H-akashiwo_Contig941.5.1 (mRNA) Heterosigma akashiwo CCMP452
Overview
Homology
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK) HSP 1 Score: 123 bits (309), Expect = 3.870e-33 Identity = 55/73 (75.34%), Postives = 64/73 (87.67%), Query Frame = 1 Query: 1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQRSGYKSCLY 219 LDISTAFLNG + DVYVRQPP +VDP+HPNK KLNKALYGLKQSP +WY++LHDHL S GF+RSG++SCLY Sbjct: 36 LDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLY 108
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK) HSP 1 Score: 115 bits (289), Expect = 4.300e-29 Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 1 Query: 1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQRSGYKSCLY 219 LDISTAFLN DIDGDVYV+QPPGFVD +HP+K KL KALYGL+QSP +WY LH+ LL Q F RS Y+SCLY Sbjct: 224 LDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLY 296
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A7S3Y3C5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3C5_HETAK) HSP 1 Score: 115 bits (289), Expect = 5.540e-29 Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 1 Query: 1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQRSGYKSCLY 219 LDISTAFLN DIDGDVYV+QPPGFVD +HP+K KL KALYGL+QSP +WY LH+ LL Q F RS Y+SCLY Sbjct: 295 LDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLY 367
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A803QDY6_CANSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803QDY6_CANSA) HSP 1 Score: 91.3 bits (225), Expect = 9.010e-20 Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1 Query: 1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQ 192 LD++ AFLNGD+ ++Y+ QPPGFVDPEHPNK KL+KA+YGLKQ+P W+ +L LLS GFQ Sbjct: 128 LDVNNAFLNGDLQEEIYMVQPPGFVDPEHPNKVCKLHKAIYGLKQAPRAWFEKLSSVLLSLGFQ 191
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A699VSC0_TANCI (Gag-Pol polyprotein (Fragment) n=3 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699VSC0_TANCI) HSP 1 Score: 83.6 bits (205), Expect = 1.060e-19 Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 1 Query: 1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQR 195 +D+ TAFLNG + +VYV QP GFVDP+HP K +L KALYGLKQ+P WY +L L S+GF + Sbjct: 1 MDVKTAFLNGPLKEEVYVAQPDGFVDPDHPKKVYRLRKALYGLKQAPRAWYDELSKFLTSKGFTK 65
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: Q94EQ2_MAIZE (Reverse transcriptase (Fragment) n=2 Tax=Zea mays TaxID=4577 RepID=Q94EQ2_MAIZE) HSP 1 Score: 83.6 bits (205), Expect = 2.300e-19 Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 1 Query: 4 DISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQRSGYKSCLY 219 D+ TAFL+GD++ D+Y+ QP GF+ P + +L K+LYGLKQSP WY + +LS GFQRS Y SC+Y Sbjct: 3 DVKTAFLHGDLEEDIYMDQPEGFIVPGKEDYVCRLKKSLYGLKQSPRQWYKRFDSFMLSNGFQRSQYDSCVY 74
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A6D2KD17_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KD17_9BRAS) HSP 1 Score: 90.1 bits (222), Expect = 2.460e-19 Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1 Query: 1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQRSGYKSCLY 219 LD++ AFL G +D +VYV+QPPGFVDP+ P+ KL KALYGLKQ+P WYL+L +L+ GF+ S +CL+ Sbjct: 905 LDVNNAFLQGTLDEEVYVKQPPGFVDPDRPDYVCKLRKALYGLKQAPRAWYLELKRYLVDVGFKNSLADTCLF 977
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A699W388_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699W388_TANCI) HSP 1 Score: 84.3 bits (207), Expect = 3.570e-19 Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 1 Query: 1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQRSGYKSCLY 219 +D+ TAFLNG++ +VY+ QP GFVD ++PN KL KALYGLKQ+PH WY L LLSQ F + L+ Sbjct: 28 MDVKTAFLNGNLQEEVYIGQPDGFVDSDNPNHVYKLKKALYGLKQAPHAWYDMLSSFLLSQDFSKGSVNPTLF 100
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A392T0D7_9FABA (Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392T0D7_9FABA) HSP 1 Score: 82.4 bits (202), Expect = 3.640e-19 Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1 Query: 1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQRSG 201 +D+ +AFLNG + +VYV QP GF+DP HP+ KL KA YGLKQ+P WY +L + L+SQG+++ G Sbjct: 1 MDVKSAFLNGYLHEEVYVEQPKGFIDPNHPDHVYKLKKAQYGLKQAPRAWYERLTEFLVSQGYRKGG 67
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Match: A0A699R5A0_TANCI (Gag-Pol polyprotein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699R5A0_TANCI) HSP 1 Score: 82.0 bits (201), Expect = 4.310e-19 Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1 Query: 1 LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*KLNKALYGLKQSPHIWYLQLHDHLLSQGFQR 195 +D+ TAFLNG ++ +VYV QP GFVDP+HP K +L KALYGLK++P WY +L L S+GF + Sbjct: 1 MDVKTAFLNGPLNEEVYVAQPDGFVDPDHPEKVYRLRKALYGLKKAPREWYDELSTFLTSKGFTK 65 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig941.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig941.5.1 >prot_H-akashiwo_Contig941.5.1 ID=prot_H-akashiwo_Contig941.5.1|Name=mRNA_H-akashiwo_Contig941.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=34bp LDISTAFLNGDIDGDVYVRQPPGFVDPEHPNKF*back to top mRNA from alignment at H-akashiwo_Contig941:149288..149515+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig941.5.1 ID=mRNA_H-akashiwo_Contig941.5.1|Name=mRNA_H-akashiwo_Contig941.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=228bp|location=Sequence derived from alignment at H-akashiwo_Contig941:149288..149515+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig941:149288..149515+ >mRNA_H-akashiwo_Contig941.5.1 ID=mRNA_H-akashiwo_Contig941.5.1|Name=mRNA_H-akashiwo_Contig941.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=102bp|location=Sequence derived from alignment at H-akashiwo_Contig941:149288..149515+ (Heterosigma akashiwo CCMP452)back to top |