mRNA_H-akashiwo_Contig940.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig940.3.1
Unique NamemRNA_H-akashiwo_Contig940.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig940.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig940contigH-akashiwo_Contig940:145888..146933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size138
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388051.971659-UTR-H-akashiwo_Contig940:145887..1459181681388051.971659-UTR-H-akashiwo_Contig940:145887..145918Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig940 145888..145918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388051.983646-CDS-H-akashiwo_Contig940:145918..1459681681388051.983646-CDS-H-akashiwo_Contig940:145918..145968Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig940 145919..145968 +
1681388051.9942658-CDS-H-akashiwo_Contig940:146845..1469331681388051.9942658-CDS-H-akashiwo_Contig940:146845..146933Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig940 146846..146933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig940.3.1prot_H-akashiwo_Contig940.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig940 145919..146933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig940.3.1

>prot_H-akashiwo_Contig940.3.1 ID=prot_H-akashiwo_Contig940.3.1|Name=mRNA_H-akashiwo_Contig940.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=46bp
MLEDILFNLEPNYAEIRWADRTRPSCGWRWWRGRWAPLAARDPLRR
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mRNA from alignment at H-akashiwo_Contig940:145888..146933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig940.3.1 ID=mRNA_H-akashiwo_Contig940.3.1|Name=mRNA_H-akashiwo_Contig940.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1046bp|location=Sequence derived from alignment at H-akashiwo_Contig940:145888..146933+ (Heterosigma akashiwo CCMP452)
TGAAAATGGTCATGAAGTGAACCCGGCAACGATGCTGGAGGACATACTTT
TCAATCTTGAACCAAACTACGCTGAGATCAGGTGTGTTCAAATTAAAAAA
AAAAAAAAAAAAAAAAAACACTGTTTTTTTTTTGCCATTGTGTGTATCAA
GTTATCAAATGCGTGTGTTTGTGTGTGTGTGTATGTTTTATGAGTTTTCA
TCCTGAGGTATTTCCTCTAAAGCTTGAATAGTCGAGTGGTTAAGGTCCTT
AAAGAGGCAAACTTGCGGAGAGATGAAGCCCCTGCCCCGGGTTCGAGCCT
TAGCACTCGAATTTCGGAAAATCGGGTGCCCGTTAAGTCAATACTTCGAA
ACGCTTGGAATATGGGCCTAGTCATCGGATTTCGGCAGTCGGAGGAGGGC
AAGGATTGGATACGATGGCGATATGGAGCAATGGCGTGGGAGGAGGAAGT
GCCGGAAGCTCCAGAAGATGTTCGCAAGCATTGGAAGGCGCGGTGATGCA
AGCGCTAATCACTACAAGGTTCACATCGACAAGCTCAGAGATGGCTCGAC
ATGACGGTCGGCTGGCGTAGAGGACCTTCCTCAGGATGTGACGAGGCATG
ATATAATTGATTAATGGGACCACCATCAGGGCATAGGAAGTTCCAAAAGG
AAGACGTTGACCCAGTGTATTACCAAAAAGAAATCACTGGTTGACTGCTT
GCATGTTGTGTGGTTTCTGAGCTTGTTGGCTAGAGACTGGAAGTGTTGGC
CCTTGTACCATAAGCCCTCTCCGGCGCTCGTGAACACCTCTTACGTCCAC
CAAGGGTCACCCTCCATCGCCGACGATCTTCTTCTTCCGTGGACGCGTCG
ACCGCTGCCCATCGTTGATTCGCTGCCGGGCGGCGGCGGGCGGCGGGCGG
CGGCGGCGGCGGCGGGGCGGCGGGCGGTGGCGGCGGCGGCGGCGGTGGCG
GCGGGCAGGTGGGCGGACCGGACGCGGCCGAGCTGCGGCTGGCGCTGGTG
GCGCGGGCGCTGGGCGCCGTTGGCGGCTCGCGACCCGCTACGGCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig940:145888..146933+

>mRNA_H-akashiwo_Contig940.3.1 ID=mRNA_H-akashiwo_Contig940.3.1|Name=mRNA_H-akashiwo_Contig940.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=138bp|location=Sequence derived from alignment at H-akashiwo_Contig940:145888..146933+ (Heterosigma akashiwo CCMP452)
ATGCTGGAGGACATACTTTTCAATCTTGAACCAAACTACGCTGAGATCAG
GTGGGCGGACCGGACGCGGCCGAGCTGCGGCTGGCGCTGGTGGCGCGGGC
GCTGGGCGCCGTTGGCGGCTCGCGACCCGCTACGGCGG
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