mRNA_H-akashiwo_Contig940.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig940.2.1
Unique NamemRNA_H-akashiwo_Contig940.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig940.2.1 vs. uniprot
Match: A0A7S3XIR6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XIR6_HETAK)

HSP 1 Score: 65.9 bits (159), Expect = 3.400e-10
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = -2 
Query:  115 GCVSEDLTYYDSATSDSDDDTAK--LYVKDLSGVFILHILVVAVCVLLRWASTLKWVQHEEDKVKNSKSFRFVSDKFKELDAKVDEAVAEALGNE 393
            GCVS+DLTY   +T DSDD++ +  LY  DLSGVF+LH L++  C L+R     + VQ    +++ SK FRFV +K  + +  +++ +A   G E
Sbjct:  123 GCVSDDLTYI--STDDSDDESTERALYAHDLSGVFLLHGLIMVSCSLIRCVENRRGVQKAVKEIEKSKGFRFVMNKLHKAEEMLEDTLAGPEGKE 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig940.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XIR6_HETAK3.400e-1041.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig940contigH-akashiwo_Contig940:66536..66941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size406
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388052.1417227-CDS-H-akashiwo_Contig940:66535..668441681388052.1417227-CDS-H-akashiwo_Contig940:66535..66844Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig940 66536..66844 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388052.1649947-UTR-H-akashiwo_Contig940:66844..669411681388052.1649947-UTR-H-akashiwo_Contig940:66844..66941Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig940 66845..66941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig940.2.1prot_H-akashiwo_Contig940.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig940 66536..66844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig940.2.1

>prot_H-akashiwo_Contig940.2.1 ID=prot_H-akashiwo_Contig940.2.1|Name=mRNA_H-akashiwo_Contig940.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=103bp
GKGEPRPGGRCVFPLSRRRRGRRRPLSPPRLVCGGATVLVAQGLGHSLVH
LGVQLLELVRHKAEALGVLHLVLLVLDPLQGGGPAEKHTDRHDQNVQYEH
PR*
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mRNA from alignment at H-akashiwo_Contig940:66536..66941+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig940.2.1 ID=mRNA_H-akashiwo_Contig940.2.1|Name=mRNA_H-akashiwo_Contig940.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=406bp|location=Sequence derived from alignment at H-akashiwo_Contig940:66536..66941+ (Heterosigma akashiwo CCMP452)
GGCAAGGGAGAACCGCGACCTGGGGGGCGCTGCGTCTTCCCTTTGTCGCG
GCGCCGTCGGGGCCGCCGCCGCCCCCTCAGCCCGCCCCGTCTCGTCTGTG
GGGGCGCCACTGTCCTCGTTGCCCAGGGCCTCGGCCACAGCCTCGTCCAC
CTTGGCGTCCAGCTCCTTGAACTTGTCCGACACAAAGCGGAAGCTCTTGG
AGTTCTTCACCTTGTCCTCCTCGTGCTGGACCCACTTCAGGGTGGAGGCC
CAGCGGAGAAGCACACAGACCGCCACGACCAGAATGTGCAGTATGAACAC
CCCAGATAAGTCTTTGACGTAGAGCTTGGCGGTGTCGTCGTCGCTGTCAG
AGGTGGCAGAGTCGTAGTACGTAAGGTCTTCGGAAACGCAGCCGTCTGCG
TTTTGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig940:66536..66941+

>mRNA_H-akashiwo_Contig940.2.1 ID=mRNA_H-akashiwo_Contig940.2.1|Name=mRNA_H-akashiwo_Contig940.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=309bp|location=Sequence derived from alignment at H-akashiwo_Contig940:66536..66941+ (Heterosigma akashiwo CCMP452)
GGCAAGGGAGAACCGCGACCTGGGGGGCGCTGCGTCTTCCCTTTGTCGCG
GCGCCGTCGGGGCCGCCGCCGCCCCCTCAGCCCGCCCCGTCTCGTCTGTG
GGGGCGCCACTGTCCTCGTTGCCCAGGGCCTCGGCCACAGCCTCGTCCAC
CTTGGCGTCCAGCTCCTTGAACTTGTCCGACACAAAGCGGAAGCTCTTGG
AGTTCTTCACCTTGTCCTCCTCGTGCTGGACCCACTTCAGGGTGGAGGCC
CAGCGGAGAAGCACACAGACCGCCACGACCAGAATGTGCAGTATGAACAC
CCCAGATAA
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