mRNA_H-akashiwo_Contig940.15.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig940.15.1
Unique NamemRNA_H-akashiwo_Contig940.15.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig940.15.1 vs. uniprot
Match: A0A7S3XVK2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVK2_HETAK)

HSP 1 Score: 68.2 bits (165), Expect = 2.860e-11
Identity = 74/79 (93.67%), Postives = 74/79 (93.67%), Query Frame = 3 
Query:  186 STLKAEVSDTKTTGASXXXXXXXXXXXXXAATATPAAAVEAVXXXXXXXXXXXXXXXXXXXXEPTSTGGSYFDSFGGSA 422
            STLKAEVSDTKTTGA XXXXXXXXXXXXX ATA PAAAVEAV XXXXXXXXXXXXXXXXXX EPTSTGGSYFDSFGGSA
Sbjct:  114 STLKAEVSDTKTTGAXXXXXXXXXXXXXXXATAAPAAAVEAVPXXXXXXXXXXXXXXXXXXVEPTSTGGSYFDSFGGSA 192
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BLAST of mRNA_H-akashiwo_Contig940.15.1 vs. uniprot
Match: A0A7S3XVH1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVH1_HETAK)

HSP 1 Score: 53.9 bits (128), Expect = 1.070e-5
Identity = 62/86 (72.09%), Postives = 64/86 (74.42%), Query Frame = 3 
Query:  171 APMKDSTLKAEVSDTKTTGASXXXXXXXXXXXXXAATATPAAAVEAVXXXXXXXXXXXXXXXXXXXXEPTSTGGSYFDSFGGSAAP 428
            AP K STLKAEVSDTKTTGASXXXXXXXXXXXXXAA ++ A A   VXXXXXXXXXX          E   TGGSYFDSFG SAAP
Sbjct:  164 APAKASTLKAEVSDTKTTGASXXXXXXXXXXXXXAAPSSAAPAASPVXXXXXXXXXXSPV-------EAACTGGSYFDSFGSSAAP 242
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BLAST of mRNA_H-akashiwo_Contig940.15.1 vs. uniprot
Match: A0A7S3XVJ1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVJ1_HETAK)

HSP 1 Score: 50.8 bits (120), Expect = 3.130e-5
Identity = 76/89 (85.39%), Postives = 76/89 (85.39%), Query Frame = 3 
Query:  171 APMKDST-LKAEVSDTKTTGASXXXXXXXXXXXXXAATATPAAAVEAVXXXXXXXXXXXXXXXXXXXX--EPTSTGGSYFDSFGGSAAP 428
            AP K ST LKAEVSDTKTTGASXXXXXXXXXXXXXAA   PAAA  A XXXXXXXXXXXXXXXXXXXX  E  STGGSYFDSFGGSAAP
Sbjct:   24 APAKASTSLKAEVSDTKTTGASXXXXXXXXXXXXXAA---PAAAPVAXXXXXXXXXXXXXXXXXXXXXPVEAASTGGSYFDSFGGSAAP 109
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BLAST of mRNA_H-akashiwo_Contig940.15.1 vs. uniprot
Match: A0A7S3XVP5_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVP5_HETAK)

HSP 1 Score: 50.8 bits (120), Expect = 7.570e-5
Identity = 67/87 (77.01%), Postives = 72/87 (82.76%), Query Frame = 3 
Query:  171 APMKDSTLKAEVSDTKTTGASXXXXXXXXXXXXXAATATPAAAVEAVXXXXXXXXXXXXXXXXXXXX-EPTSTGGSYFDSFGGSAAP 428
            AP+K S+LKAEVSDT+ TGA XXXXXXXXXXXXXAA + PAAA    XXXXXXXXXXXXXXXXXX   E   +GGSYFDSFGGSAAP
Sbjct:   79 APVKASSLKAEVSDTRATGAXXXXXXXXXXXXXXAAASAPAAAAXXXXXXXXXXXXXXXXXXXXXVPVEAALSGGSYFDSFGGSAAP 165
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig940.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3XVK2_HETAK2.860e-1193.67Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3XVH1_HETAK1.070e-572.09Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XVJ1_HETAK3.130e-585.39Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XVP5_HETAK7.570e-577.01Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig940contigH-akashiwo_Contig940:409230..409657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size428
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388052.2014565-UTR-H-akashiwo_Contig940:409229..4092611681388052.2014565-UTR-H-akashiwo_Contig940:409229..409261Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig940 409230..409261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388052.214851-CDS-H-akashiwo_Contig940:409261..4096571681388052.214851-CDS-H-akashiwo_Contig940:409261..409657Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig940 409262..409657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig940.15.1prot_H-akashiwo_Contig940.15.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig940 409262..409657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig940.15.1

>prot_H-akashiwo_Contig940.15.1 ID=prot_H-akashiwo_Contig940.15.1|Name=mRNA_H-akashiwo_Contig940.15.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=132bp
MVGTSMPAAASVPVASSAAKEFIEEAIAVLDGTTSGSYFDSFGGSAAPMK
DSTLKAEVSDTKTTGASGSYFDSMAGTSMPAATATPAAAVEAVPAPVVIP
AVATAATASPVPVEPTSTGGSYFDSFGGSAAP
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mRNA from alignment at H-akashiwo_Contig940:409230..409657+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig940.15.1 ID=mRNA_H-akashiwo_Contig940.15.1|Name=mRNA_H-akashiwo_Contig940.15.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=428bp|location=Sequence derived from alignment at H-akashiwo_Contig940:409230..409657+ (Heterosigma akashiwo CCMP452)
CCACTGGGGCATCTGGTTCTTACTTTGACAGCATGGTCGGTACCTCCATG
CCCGCTGCAGCCTCAGTGCCTGTAGCCTCCAGTGCTGCCAAGGAGTTTAT
TGAAGAAGCAATTGCAGTGCTGGATGGCACCACTTCTGGCTCCTACTTTG
ACTCCTTTGGTGGCTCTGCGGCCCCGATGAAAGATTCTACCCTCAAGGCT
GAAGTTTCCGACACCAAAACCACCGGGGCATCTGGCTCCTACTTTGACAG
CATGGCCGGTACTTCCATGCCCGCTGCTACTGCTACCCCTGCTGCTGCTG
TGGAGGCTGTTCCTGCGCCTGTTGTCATCCCTGCAGTAGCAACTGCTGCT
ACTGCTTCCCCTGTGCCTGTGGAGCCCACTTCCACCGGTGGCTCTTACTT
TGACTCCTTTGGCGGCTCTGCGGCCCCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig940:409230..409657+

>mRNA_H-akashiwo_Contig940.15.1 ID=mRNA_H-akashiwo_Contig940.15.1|Name=mRNA_H-akashiwo_Contig940.15.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=396bp|location=Sequence derived from alignment at H-akashiwo_Contig940:409230..409657+ (Heterosigma akashiwo CCMP452)
ATGGTCGGTACCTCCATGCCCGCTGCAGCCTCAGTGCCTGTAGCCTCCAG
TGCTGCCAAGGAGTTTATTGAAGAAGCAATTGCAGTGCTGGATGGCACCA
CTTCTGGCTCCTACTTTGACTCCTTTGGTGGCTCTGCGGCCCCGATGAAA
GATTCTACCCTCAAGGCTGAAGTTTCCGACACCAAAACCACCGGGGCATC
TGGCTCCTACTTTGACAGCATGGCCGGTACTTCCATGCCCGCTGCTACTG
CTACCCCTGCTGCTGCTGTGGAGGCTGTTCCTGCGCCTGTTGTCATCCCT
GCAGTAGCAACTGCTGCTACTGCTTCCCCTGTGCCTGTGGAGCCCACTTC
CACCGGTGGCTCTTACTTTGACTCCTTTGGCGGCTCTGCGGCCCCT
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