mRNA_H-akashiwo_Contig940.14.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig940.14.1
Unique NamemRNA_H-akashiwo_Contig940.14.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig940.14.1 vs. uniprot
Match: A0A7S3Y4D0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4D0_HETAK)

HSP 1 Score: 99.0 bits (245), Expect = 6.490e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 ADKLLPSKSSSTDAAPIVSKQQVKAENPAAPVMAAVEADILSQIAEEVAPKEPVAAPV 174
            ADKLLPSKSSSTDAAPIVSKQQVKAENPAAPVMAAVEADILSQIAEEVAPKEPVAAPV
Sbjct:  102 ADKLLPSKSSSTDAAPIVSKQQVKAENPAAPVMAAVEADILSQIAEEVAPKEPVAAPV 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig940.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y4D0_HETAK6.490e-24100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig940contigH-akashiwo_Contig940:402176..403813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size176
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388052.089842-CDS-H-akashiwo_Contig940:402175..4022381681388052.089842-CDS-H-akashiwo_Contig940:402175..402238Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig940 402176..402238 +
1681388052.1010332-CDS-H-akashiwo_Contig940:402802..4028801681388052.1010332-CDS-H-akashiwo_Contig940:402802..402880Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig940 402803..402880 +
1681388052.1119583-CDS-H-akashiwo_Contig940:403779..4038121681388052.1119583-CDS-H-akashiwo_Contig940:403779..403812Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig940 403780..403812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig940.14.1prot_H-akashiwo_Contig940.14.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig940 402176..403812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig940.14.1

>prot_H-akashiwo_Contig940.14.1 ID=prot_H-akashiwo_Contig940.14.1|Name=mRNA_H-akashiwo_Contig940.14.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=58bp
ADKLLPSKSSSTDAAPIVSKQQVKAENPAAPVMAAVEADILSQIAEEVAP
KEPVAAPV
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mRNA from alignment at H-akashiwo_Contig940:402176..403813+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig940.14.1 ID=mRNA_H-akashiwo_Contig940.14.1|Name=mRNA_H-akashiwo_Contig940.14.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1638bp|location=Sequence derived from alignment at H-akashiwo_Contig940:402176..403813+ (Heterosigma akashiwo CCMP452)
GCAGACAAACTTCTGCCATCCAAGAGCAGCTCGACGGATGCAGCTCCAAT
TGTGTCAAAGCAGGTACCGGACATCTGATATCCTTCATGCTCATTTTTTT
TTTCCAGTTTTGTGCGCGTCTAAGCTTTTGGCTGTTGTAATACCACTTTA
TTAAATTTTGTTTTGGGCTGTCAGTCAAACTAAGTGGAACAATTACCCAT
GCGGTCCAATGTTGTTTAACAATTGATTGGCATGCTCCAGTAATGAATTG
CAAGGCTGGTCGCGGTGTGTTTCCTGTTgGGGGAATAAACCCCAACCCAC
CCAGGGCGTCCTGGTAGATGGAAAAACAATTAAATCTTTTTGTCCCGATA
CCCAAGGAGGGTGATTTTGTTCCCGGTGCTTGGCTTGCTTGCAGCAGCCC
CCCCCTTTTTTTGTTCTCTAATATCACGCTTGGCAACACGTCATGCCTGC
TTGCACATGTGGCTAATGCTTTTTCAGTCACAAGCCAGCTGTCTTGGACT
CTTTACTTGCAATGTGTACTTTACTATTGTACCTCCTGTGTCAGTGGGAG
CAAGTTGAGGCCTATAGCCGTGCTTAAATAAACTTCTCTGCTTGCTGGCT
TTTTTGTGCGAATGCACCTCACCACAGCAAGTCAAGGCTGAAAACCCTGC
CGCCCCTGTCATGGCTGCTGTGGAGGCCGACATTTTATCCCAGATTGCTG
AAGAGGTCAGTGTTGCGGTTAAATATATATATCCTCCTTTCTCCTTTTTT
TTTTTTTTGGGGGATGATATATAGATTGCATGCAAGGGTAAGAAAGAAAA
ATGCAAATGACATGAGCAGAGGTAGCATTATAGCCTAGCTGAACTATTTT
CTCCACTTTGTGCTTTTACACGTAGACAAAAAAAATGCAGTGTATTAGTT
CAATGAAAAGGTATACGTGATTGAAAAACCTCTGATGTGTGGCCTTGGTA
ATATGGAGCTAATACACTTGCTGATGATGGAAACGGCCTTCCTAGTAGAC
CCAACACCTTTCAAAGAAGAGAGACATTTGTTGTTGGCATGATATGATAC
CGCTCTCTCCAGCTGACTGCGTGTGGGGGGGGGGGGGAGGATTACAACTT
TGATGCTTTTGTTTTCGGGAAAACAGCTGCAGGGGTGCACATGTGGATTG
CTCATTTGTGTGTGGGCAGGTCAGTTTCTTTTACTTTCAATCGATGTGGG
ATTCGAGGTTTGCAGGGTATCATAACAACTTTGTCTCCTGGTAGTCTGAA
TCTGAAGATAACACTTGTTGAGGGCAAGGTGCGCGAGCTTGAGGTTTGCA
GGGTATCTCAACAACGTTTTATCCGACTAGTCTGAATCTGAAAATAAAAT
GTGCTGGGGGCAGGGGGCACCGAGGGTGGGGGGGGATCTCACCCAGTCCA
GAATTTCACATCCAATGGACTCCATTGTTGAACTGTGCCATATATATTAG
ATTGCCTGTCTGTGGGGATTGGGGCAGGACTACATTTCATTCAACAATAT
CTTGATTGCAGTCGAGTCATGTGTGCCATATATATTATGACTTATGAATC
TGCTGCTCTCTGCTGCCTACCATACCTGTTCTTCACTTTGGTTTCTCCGA
GCAGGTTGCCCCAAAAGAACCAGTAGCTGCACCTGTTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig940:402176..403813+

>mRNA_H-akashiwo_Contig940.14.1 ID=mRNA_H-akashiwo_Contig940.14.1|Name=mRNA_H-akashiwo_Contig940.14.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=174bp|location=Sequence derived from alignment at H-akashiwo_Contig940:402176..403813+ (Heterosigma akashiwo CCMP452)
GCAGACAAACTTCTGCCATCCAAGAGCAGCTCGACGGATGCAGCTCCAAT
TGTGTCAAAGCAGCAAGTCAAGGCTGAAAACCCTGCCGCCCCTGTCATGG
CTGCTGTGGAGGCCGACATTTTATCCCAGATTGCTGAAGAGGTTGCCCCA
AAAGAACCAGTAGCTGCACCTGTT
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