mRNA_H-akashiwo_Contig940.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig940.13.1
Unique NamemRNA_H-akashiwo_Contig940.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig940.13.1 vs. uniprot
Match: A0A7S3Y8N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8N4_HETAK)

HSP 1 Score: 277 bits (708), Expect = 1.210e-85
Identity = 141/178 (79.21%), Postives = 155/178 (87.08%), Query Frame = 1
Query:    1 VSPRVLKHCARQLACLLTRLFQKVGKSGEFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFLFGHILPNQFGFLPGTGTVDVGVILTDRIFLALEARKDVWLVALDFKGAFDKVWWRGLLAHLWAVGVPSKAFKLMQSYLSDRALFVVANGDSSSHMSIKS 534
            VSPRVLK CA QL   LTRLFQK+GK+ EFP SWKVARVTPV+KK+DA+LP+NYRPISVLPTLATTFERVLM QL+SFL  HI  NQFGFLP TGT+DVGVIL D+I  ALEARKDV LVALDF+GAFDKVWWRGLLAHLWAVGV SKA++L +SYLSDRALFVVANG  S  +SIKS
Sbjct:  334 VSPRVLKDCAGQLVAPLTRLFQKIGKAAEFPTSWKVARVTPVHKKEDANLPKNYRPISVLPTLATTFERVLMPQLASFLIEHIPSNQFGFLPDTGTLDVGVILADQISRALEARKDVRLVALDFQGAFDKVWWRGLLAHLWAVGVRSKAYQLFESYLSDRALFVVANGQISERVSIKS 511          
BLAST of mRNA_H-akashiwo_Contig940.13.1 vs. uniprot
Match: A0A7S3Y8Z6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Z6_HETAK)

HSP 1 Score: 254 bits (648), Expect = 2.400e-78
Identity = 127/157 (80.89%), Postives = 138/157 (87.90%), Query Frame = 1
Query:    1 VSPRVLKHCARQLACLLTRLFQKVGKSGEFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFLFGHILPNQFGFLPGTGTVDVGVILTDRIFLALEARKDVWLVALDFKGAFDKVWWRGLLAHLWAVGVPSKAFKLMQSYL 471
            VSPRVLK CA QL   LTRLFQK+GK+ EFP SWKVARVTPVYKK+DASLP+NYRPISVLPTLATTFERVLM QL+SFL  HI  NQFGFLP TGT+DVGVIL D+I  ALEARKDV LVALDF+GAFDKVWWRGLLAHLWAVGV SKA++L +SYL
Sbjct:  334 VSPRVLKDCAGQLVAPLTRLFQKIGKAAEFPTSWKVARVTPVYKKEDASLPKNYRPISVLPTLATTFERVLMPQLASFLIEHIPSNQFGFLPDTGTLDVGVILADQISRALEARKDVRLVALDFQGAFDKVWWRGLLAHLWAVGVRSKAYQLFESYL 490          
BLAST of mRNA_H-akashiwo_Contig940.13.1 vs. uniprot
Match: A0A0P4VX79_SCYOL (Uncharacterized protein n=1 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4VX79_SCYOL)

HSP 1 Score: 134 bits (337), Expect = 3.840e-33
Identity = 76/179 (42.46%), Postives = 105/179 (58.66%), Query Frame = 1
Query:    1 VSPRVLKHCARQLACLLTRLFQKVGKSGEFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFLF-GHILPN-QFGFLPGTGTVDVGVILTDRIFLALEARKDVWLVALDFKGAFDKVWWRGLLAHLWAVGVPSKAFKLMQSYLSDRALFVVANGDSSSHMSIK 531
            VSPR+LKHCAR+L+  LT +F    +  ++P  WK ARV PV+KK   S P NYRPIS+L  +    E+++   +   L   H+L + QFGF PG  T D+ +I++     ALE   D  +VALD  GAFD+VW  GL+  L A G+      L++ YL  R L VV NG +S  + I+
Sbjct:  388 VSPRLLKHCARELSAPLTTVFTSCLREKKWPSVWKEARVVPVHKKNSRSEPNNYRPISLLSVMGKLLEKIVAAAIYQHLSENHLLSDRQFGFRPGRSTADLLLIISKDWQDALEEGLDTLVVALDIAGAFDRVWHAGLVKKLCAKGIQGNLLALLEDYLQGRTLRVVINGQASQPLPIQ 566          
BLAST of mRNA_H-akashiwo_Contig940.13.1 vs. uniprot
Match: A0FGX5_9NEOP (Reverse transcriptase (Fragment) n=25 Tax=Polyommatinae TaxID=42297 RepID=A0FGX5_9NEOP)

HSP 1 Score: 120 bits (300), Expect = 4.600e-31
Identity = 70/178 (39.33%), Postives = 102/178 (57.30%), Query Frame = 1
Query:    1 VSPRVLKHCARQLACLLTRLFQKVGKSGEFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFLFGHIL--PNQFGFLPGTGTVDVGVILTDRIFLALEARKDVWLVALDFKGAFDKVWWRGLLAHLWAVGVPSKAFKLMQSYLSDRALFVVANGDSSSHMSI 528
            + P VLK CA +LA +LTRLF+    SG  P SWK A V P+ K+ D S P NYRPI++    +   E ++  Q   +L G  L    Q+GF  G    D+   LT R   A+E++ +   V+LD   AFD+VW + LL+ L + G+P K  K + S+L+DR++ VV +G+ S   S+
Sbjct:    1 IPPIVLKKCAPELAPILTRLFRFSYSSGIVPASWKTALVHPIPKRGDRSNPSNYRPIAITSLFSKIMEYIINSQPLRYLDGQGLLSDKQYGFRKGRSAGDLLAYLTHRWAQAIESKGEALAVSLDIAKAFDRVWHKALLSKLPSYGLPEKLCKWVTSFLADRSIKVVVDGECSETQSV 178          
BLAST of mRNA_H-akashiwo_Contig940.13.1 vs. uniprot
Match: A0A7S3Y8J9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8J9_HETAK)

HSP 1 Score: 122 bits (305), Expect = 6.400e-31
Identity = 62/66 (93.94%), Postives = 62/66 (93.94%), Query Frame = 1
Query:  337 ARKDVWLVALDFKGAFDKVWWRGLLAHLWAVGVPSKAFKLMQSYLSDRALFVVANGDSSSHMSIKS 534
            ARKDV LV LDFKGA DKVWWRGLLAHLWAVGV SKAFKLMQSYLSDRALFVVANGDSSSHMSIKS
Sbjct:    1 ARKDVRLVELDFKGACDKVWWRGLLAHLWAVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKS 66          
BLAST of mRNA_H-akashiwo_Contig940.13.1 vs. uniprot
Match: F2WZY0_9NEOP (Reverse transcriptase (Fragment) n=1 Tax=Pseudolucia collina TaxID=689551 RepID=F2WZY0_9NEOP)

HSP 1 Score: 116 bits (290), Expect = 1.350e-29
Identity = 70/177 (39.55%), Postives = 100/177 (56.50%), Query Frame = 1
Query:    1 VSPRVLKHCARQLACLLTRLFQKVGKSGEFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFLFGHIL--PNQFGFLPGTGTVDVGVILTDRIFLALEARKDVWLVALDFKGAFDKVWWRGLLAHLWAVGVPSKAFKLMQSYLSDRALFVVANGDSSSHMS 525
            + P VLK CA +LA +LTRLF+     G  P SWK A V P+ KK D S P NYRPI++    +   E ++  QL  +L    L    Q+GF  G    D+   LT R   A+E + +   V+LD   AFD+VW + LL+ L + G+P K  K + S+L+DR++ VV +G+ S  +S
Sbjct:    1 IPPIVLKKCAPELAPVLTRLFRLSYSYGIVPTSWKTALVHPIPKKGDHSNPSNYRPIAITFLFSKIMESIINSQLLRYLDAQELLSDKQYGFRKGRSAGDLLAYLTHRWAQAIETKGEALAVSLDIAKAFDRVWHKALLSKLPSYGLPEKFCKGVTSFLTDRSMKVVIDGECSDTLS 177          
BLAST of mRNA_H-akashiwo_Contig940.13.1 vs. uniprot
Match: F2WZY3_9NEOP (Reverse transcriptase (Fragment) n=1 Tax=Pseudolucia collina TaxID=689551 RepID=F2WZY3_9NEOP)

HSP 1 Score: 115 bits (287), Expect = 3.700e-29
Identity = 68/171 (39.77%), Postives = 97/171 (56.73%), Query Frame = 1
Query:    1 VSPRVLKHCARQLACLLTRLFQKVGKSGEFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFLFGHIL--PNQFGFLPGTGTVDVGVILTDRIFLALEARKDVWLVALDFKGAFDKVWWRGLLAHLWAVGVPSKAFKLMQSYLSDRALFVVANGD 507
            + P VLK CA +LA +LTRLF+     G  P SWK A + P+ KK D S P NYRPI++    +   E ++  QL  +L    L    Q+GF  G    D+   LT R   A+E + +   V+LD   AFD+VW + LL+ L A G+P K  K + S+L+DR++ VV +G+
Sbjct:    1 IPPIVLKKCAPELAPVLTRLFRLSYSDGIVPTSWKTA-LHPISKKGDRSNPSNYRPIAITSLFSKIMESIINSQLLRYLDAQELLSDKQYGFRKGRSAGDLLAYLTHRWAQAIETKGEALAVSLDIAKAFDRVWHKALLSKLPAYGLPEKLCKWVTSFLTDRSIKVVRDGE 170          
BLAST of mRNA_H-akashiwo_Contig940.13.1 vs. uniprot
Match: A0A7S3Y8U8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8U8_HETAK)

HSP 1 Score: 117 bits (293), Expect = 3.800e-28
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 1
Query:  358 VALDFKGAFDKVWWRGLLAHLWAVGVPSKAFKLMQSYLSDRALFVVANGDSSSHMSIKS 534
            VALDFKGAFDKVWWRGLLAHLWAVGV SKAFKLMQSYLSDRALFVVANGDSSSHMSIKS
Sbjct:    1 VALDFKGAFDKVWWRGLLAHLWAVGVRSKAFKLMQSYLSDRALFVVANGDSSSHMSIKS 59          
BLAST of mRNA_H-akashiwo_Contig940.13.1 vs. uniprot
Match: UPI001E1D5DCD (uncharacterized protein LOC123531125 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D5DCD)

HSP 1 Score: 118 bits (295), Expect = 1.540e-27
Identity = 69/162 (42.59%), Postives = 91/162 (56.17%), Query Frame = 1
Query:    1 VSPRVLKHCARQLACLLTRLFQKVGKSGEFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFLFGHIL--PNQFGFLPGTGTVDVGVILTDRIFLALEARKDVWLVALDFKGAFDKVWWRGLLAHLWAVGVPSKAFKLMQSYLSDR 480
            VSPR L+  A  LA  L   F  + +S  FP  WK+A VTP++KK D SLP NYRPIS+L  +    ER + K + + L  H L  PNQ GF+ G  T++    L + I  AL+  K+V  V  D   AFD+VW RG+L  L  +GV     + + SYLS R
Sbjct:  502 VSPRHLREGAPALAQPLATFFNTLLRSSNFPSQWKLANVTPIFKKSDPSLPSNYRPISLLSCIGKLMERCVHKHIYNHLIMHNLLTPNQSGFVKGDSTINQLSYLYNDICRALDEGKEVRAVFCDISKAFDRVWHRGVLYKLSRLGVRGSLLQWLSSYLSSR 663          
BLAST of mRNA_H-akashiwo_Contig940.13.1 vs. uniprot
Match: A0A8J9YR33_BRALA (Hypp5830 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YR33_BRALA)

HSP 1 Score: 118 bits (295), Expect = 1.580e-27
Identity = 67/173 (38.73%), Postives = 95/173 (54.91%), Query Frame = 1
Query:    1 VSPRVLKHCARQLACLLTRLFQKVGKSGEFPRSWKVARVTPVYKKKDASLPENYRPISVLPTLATTFERVLMKQLSSFLFGHIL--PNQFGFLPGTGTVDVGVILTDRIFLALEARKDVWLVALDFKGAFDKVWWRGLLAHLWAVGVPSKAFKLMQSYLSDRALFVVANGDSS 513
            +  RVLKH A +L+  L +LFQ +      P+ WKVA V PV+KK     P NYRPIS+L  ++   E ++ K L   +  + L    QFGF  G  T D    +T  +  A + R++  L+ LD   AFD+VW RGL+A L A+GV     K  ++YL+DR L    +G +S
Sbjct:  357 IPARVLKHAAPELSRPLAKLFQLLLNKHHMPKQWKVAHVIPVHKKNSKHDPNNYRPISLLCIISKVMEAIINKALWQHIDKNSLISDKQFGFRAGHSTADALTYVTQHLHDAKDKRQESRLICLDISRAFDRVWHRGLIAKLKAIGVDGHVLKWFENYLADRELKATISGKTS 529          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig940.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8N4_HETAK1.210e-8579.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y8Z6_HETAK2.400e-7880.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0P4VX79_SCYOL3.840e-3342.46Uncharacterized protein n=1 Tax=Scylla olivacea Ta... [more]
A0FGX5_9NEOP4.600e-3139.33Reverse transcriptase (Fragment) n=25 Tax=Polyomma... [more]
A0A7S3Y8J9_HETAK6.400e-3193.94Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
F2WZY0_9NEOP1.350e-2939.55Reverse transcriptase (Fragment) n=1 Tax=Pseudoluc... [more]
F2WZY3_9NEOP3.700e-2939.77Reverse transcriptase (Fragment) n=1 Tax=Pseudoluc... [more]
A0A7S3Y8U8_HETAK3.800e-2898.31Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
UPI001E1D5DCD1.540e-2742.59uncharacterized protein LOC123531125 n=1 Tax=Merce... [more]
A0A8J9YR33_BRALA1.580e-2738.73Hypp5830 protein n=1 Tax=Branchiostoma lanceolatum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig940contigH-akashiwo_Contig940:390718..391251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15700156
PFAMsExo_endo_phos_2,RVT_1
Model size534
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue3.81e-26
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3APGY@33154|Opisthokonta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size534
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388052.4165728-CDS-H-akashiwo_Contig940:390717..3912511681388052.4165728-CDS-H-akashiwo_Contig940:390717..391251Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig940 390718..391251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig940.13.1prot_H-akashiwo_Contig940.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig940 390718..391251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig940.13.1

>prot_H-akashiwo_Contig940.13.1 ID=prot_H-akashiwo_Contig940.13.1|Name=mRNA_H-akashiwo_Contig940.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=178bp
VSPRVLKHCARQLACLLTRLFQKVGKSGEFPRSWKVARVTPVYKKKDASL
PENYRPISVLPTLATTFERVLMKQLSSFLFGHILPNQFGFLPGTGTVDVG
VILTDRIFLALEARKDVWLVALDFKGAFDKVWWRGLLAHLWAVGVPSKAF
KLMQSYLSDRALFVVANGDSSSHMSIKS
back to top

mRNA from alignment at H-akashiwo_Contig940:390718..391251-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig940.13.1 ID=mRNA_H-akashiwo_Contig940.13.1|Name=mRNA_H-akashiwo_Contig940.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=534bp|location=Sequence derived from alignment at H-akashiwo_Contig940:390718..391251- (Heterosigma akashiwo CCMP452)
GTTAGCCCGCGGGTACTGAAGCACTGCGCCCGGCAGCTGGCGTGCCTTCT CACTCGGCTTTTTCAGAAAGTGGGCAAATCTGGTGAGTTCCCCAGGAGCT GGAAGGTGGCAAGGGTCACCCCTGTCTACAAGAAGAAGGATGCCAGCCTC CCGGAGAACTACCGGCCGATCTCGGTGCTGCCCACTTTGGCCACCACGTT TGAGCGCGTTCTCATGAAGCAGCTCAGCAGTTTTCTGTTCGGGCACATCC TGCCCAACCAGTTTGGCTTCCTACCTGGTACGGGAACCGTGGATGTCGGC GTCATCCTCACCGACAGAATCTTCCTGGCCCTTGAAGCCAGGAAAGATGT GTGGTTGGTTGCGCTCGACTTCAAGGGTGCCTTTGATAAGGTGTGGTGGC GGGGTCTTCTTGCTCATCTCTGGGCGGTGGGTGTGCCCTCCAAGGCCTTC AAGCTGATGCAGAGCTACTTGTCAGACCGGGCCCTCTTTGTAGTGGCAAA CGGTGACAGCTCCAGTCATATGAGCATCAAGTCT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig940:390718..391251-

>mRNA_H-akashiwo_Contig940.13.1 ID=mRNA_H-akashiwo_Contig940.13.1|Name=mRNA_H-akashiwo_Contig940.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=534bp|location=Sequence derived from alignment at H-akashiwo_Contig940:390718..391251- (Heterosigma akashiwo CCMP452)
GTTAGCCCGCGGGTACTGAAGCACTGCGCCCGGCAGCTGGCGTGCCTTCT
CACTCGGCTTTTTCAGAAAGTGGGCAAATCTGGTGAGTTCCCCAGGAGCT
GGAAGGTGGCAAGGGTCACCCCTGTCTACAAGAAGAAGGATGCCAGCCTC
CCGGAGAACTACCGGCCGATCTCGGTGCTGCCCACTTTGGCCACCACGTT
TGAGCGCGTTCTCATGAAGCAGCTCAGCAGTTTTCTGTTCGGGCACATCC
TGCCCAACCAGTTTGGCTTCCTACCTGGTACGGGAACCGTGGATGTCGGC
GTCATCCTCACCGACAGAATCTTCCTGGCCCTTGAAGCCAGGAAAGATGT
GTGGTTGGTTGCGCTCGACTTCAAGGGTGCCTTTGATAAGGTGTGGTGGC
GGGGTCTTCTTGCTCATCTCTGGGCGGTGGGTGTGCCCTCCAAGGCCTTC
AAGCTGATGCAGAGCTACTTGTCAGACCGGGCCCTCTTTGTAGTGGCAAA
CGGTGACAGCTCCAGTCATATGAGCATCAAGTCT
back to top