mRNA_H-akashiwo_Contig94.40.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig94.40.1
Unique NamemRNA_H-akashiwo_Contig94.40.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig94.40.1 vs. uniprot
Match: A0A7S3Y5F7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5F7_HETAK)

HSP 1 Score: 72.0 bits (175), Expect = 3.120e-14
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1
Query:  127 GCLSLGLGSEACCSHLVVPVIIPCSVARSCVPLQQDGVRDHIGCHACGL 273
            G   LG+G +ACC HL +PV+  CSVA S VPLQQ GVRD IGCHACGL
Sbjct:   57 GAEGLGVGPDACCHHLTIPVLALCSVACSGVPLQQGGVRDLIGCHACGL 105          
BLAST of mRNA_H-akashiwo_Contig94.40.1 vs. uniprot
Match: A0A7S3Y7A2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7A2_HETAK)

HSP 1 Score: 61.6 bits (148), Expect = 4.730e-10
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = -1
Query:  193 LMEKWFGRMQAAGVAADVVTYTILLKGHARTGNTAR 300
            LME+WFGRMQA+GVA + +TYT LLKGH+R GNTAR
Sbjct:   11 LMEEWFGRMQASGVAPNEITYTTLLKGHSRKGNTAR 46          
BLAST of mRNA_H-akashiwo_Contig94.40.1 vs. uniprot
Match: A0A6V1UF73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UF73_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 1.220e-9
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = -1
Query:  208 GDTDLMEKWFGRMQAAGVAADVVTYTILLKGHART 312
            GDT LMEKWFGRMQ AGV A+ VTY  LLKGHART
Sbjct:    5 GDTALMEKWFGRMQTAGVVANEVTYNTLLKGHART 39          
BLAST of mRNA_H-akashiwo_Contig94.40.1 vs. uniprot
Match: A0A7S4DCK5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCK5_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 1.700e-9
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = -1
Query:  208 GDTDLMEKWFGRMQAAGVAADVVTYTILLKGHART 312
            GDT LMEKWFGRMQ AGV A+ VTY  LLKGHART
Sbjct:    5 GDTALMEKWFGRMQTAGVVANEVTYNTLLKGHART 39          
BLAST of mRNA_H-akashiwo_Contig94.40.1 vs. uniprot
Match: A0A7S3Y790_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y790_HETAK)

HSP 1 Score: 59.7 bits (143), Expect = 4.770e-9
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = -1
Query:  193 LMEKWFGRMQAAGVAADVVTYTILLKGHARTGNTAR 300
            LME+WFGRMQAAGVA + V Y  LLKGHAR GNTAR
Sbjct:   11 LMEEWFGRMQAAGVAPNEVIYNSLLKGHARKGNTAR 46          
BLAST of mRNA_H-akashiwo_Contig94.40.1 vs. uniprot
Match: A0A7S3Y5M8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5M8_HETAK)

HSP 1 Score: 59.3 bits (142), Expect = 8.720e-9
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = -1
Query:  199 GDTDLMEKWFGRMQAAGVAADVVTYTILLKGHARTGNT 312
            GD  +ME+WFGRMQAAGV  +V+TY+ LLKG+AR GNT
Sbjct:   40 GDMAMMEQWFGRMQAAGVRPNVITYSTLLKGYAREGNT 77          
BLAST of mRNA_H-akashiwo_Contig94.40.1 vs. uniprot
Match: A0A7S3Y5G4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5G4_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 1.190e-8
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = -1
Query:  184 WFGRMQAAGVAADVVTYTILLKGHARTGNTARYDH 288
            WFGRM+ AGVAAD VTY+ LLKG ARTGNTA+ +H
Sbjct:    1 WFGRMKPAGVAADDVTYSTLLKGSARTGNTAQCEH 35          
BLAST of mRNA_H-akashiwo_Contig94.40.1 vs. uniprot
Match: A0A7S3XSP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSP9_HETAK)

HSP 1 Score: 57.0 bits (136), Expect = 3.650e-8
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = -1
Query:  136 YTILLKGHARTGNTARYDHWYNQMAAAGF*PKAQT 240
            Y  LLKGHARTGNTAR  HWY+QM +AG  P A+T
Sbjct:    1 YNTLLKGHARTGNTARCQHWYDQMVSAGLQPDART 35          
BLAST of mRNA_H-akashiwo_Contig94.40.1 vs. uniprot
Match: A0A7S3XT92_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT92_HETAK)

HSP 1 Score: 56.2 bits (134), Expect = 6.400e-8
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = -1
Query:  217 GDTDLMEKWFGRMQAAGVAADVVTYTILLKGH 312
            GDT LME+WFGRMQ AGVAA+ VTYT LLKGH
Sbjct:   42 GDTALMEEWFGRMQNAGVAANEVTYTTLLKGH 73          
BLAST of mRNA_H-akashiwo_Contig94.40.1 vs. uniprot
Match: A0A7S3Y781_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y781_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 1.170e-7
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = -1
Query:  157 WFG-RMQAAG-VAADVVTYTILLKGHARTGNTARYDHWYNQMAAAG 288
            W G R+QA   V  + VTYT LLKGHAR GNTAR  HWY+QM +AG
Sbjct:   44 WQGCRLQAWRLVTPNEVTYTTLLKGHARKGNTARCQHWYDQMVSAG 89          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig94.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A7S3Y5F7_HETAK3.120e-1467.35Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y7A2_HETAK4.730e-1075.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6V1UF73_HETAK1.220e-980.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DCK5_HETAK1.700e-980.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y790_HETAK4.770e-977.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y5M8_HETAK8.720e-968.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y5G4_HETAK1.190e-874.29Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XSP9_HETAK3.650e-868.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XT92_HETAK6.400e-881.25Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y781_HETAK1.170e-763.04Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig94contigH-akashiwo_Contig94:1769955..1770268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size315
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.9440255-CDS-H-akashiwo_Contig94:1769954..17702661681388050.9440255-CDS-H-akashiwo_Contig94:1769954..1770266Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 1769955..1770266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig94.40.1prot_H-akashiwo_Contig94.40.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig94 1769955..1770266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig94.40.1

>prot_H-akashiwo_Contig94.40.1 ID=prot_H-akashiwo_Contig94.40.1|Name=mRNA_H-akashiwo_Contig94.40.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=104bp
GCVSGSSTRTSCPSDTAPSPSVPPPVWELSSPPRSPVSAQPAGCLSLGLG
SEACCSHLVVPVIIPCSVARSCVPLQQDGVRDHIGCHACGLHAAKPLLHQ
VCVP
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mRNA from alignment at H-akashiwo_Contig94:1769955..1770268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig94.40.1 ID=mRNA_H-akashiwo_Contig94.40.1|Name=mRNA_H-akashiwo_Contig94.40.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=314bp|location=Sequence derived from alignment at H-akashiwo_Contig94:1769955..1770268+ (Heterosigma akashiwo CCMP452)
GGCTGTGTCAGTGGCAGCTCCACTCGGACTTCCTGCCCCTCAGACACAGC CCCCTCGCCTTCAGTGCCTCCTCCAGTTTGGGAACTTTCATCTCCCCCAC GGTCGCCTGTGTCAGCCCAACCAGCAGGGTGCCTAAGTCTGGGCCTTGGG TCAGAAGCCTGCTGCAGCCATCTGGTTGTACCAGTGATCATACCGTGCAG TGTTGCCCGTTCTTGCGTGCCCCTTCAGCAGGATGGTGTACGTGACCACA TCGGCTGCCACGCCTGCGGCCTGCATGCGGCCAAACCACTTCTCCATCAG GTCTGTGTCCCCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig94:1769955..1770268+

>mRNA_H-akashiwo_Contig94.40.1 ID=mRNA_H-akashiwo_Contig94.40.1|Name=mRNA_H-akashiwo_Contig94.40.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=312bp|location=Sequence derived from alignment at H-akashiwo_Contig94:1769955..1770268+ (Heterosigma akashiwo CCMP452)
GGCTGTGTCAGTGGCAGCTCCACTCGGACTTCCTGCCCCTCAGACACAGC
CCCCTCGCCTTCAGTGCCTCCTCCAGTTTGGGAACTTTCATCTCCCCCAC
GGTCGCCTGTGTCAGCCCAACCAGCAGGGTGCCTAAGTCTGGGCCTTGGG
TCAGAAGCCTGCTGCAGCCATCTGGTTGTACCAGTGATCATACCGTGCAG
TGTTGCCCGTTCTTGCGTGCCCCTTCAGCAGGATGGTGTACGTGACCACA
TCGGCTGCCACGCCTGCGGCCTGCATGCGGCCAAACCACTTCTCCATCAG
GTCTGTGTCCCC
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