mRNA_H-akashiwo_Contig94.39.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig94.39.1
Unique NamemRNA_H-akashiwo_Contig94.39.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig94.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig94contigH-akashiwo_Contig94:1728225..1729840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size310
Hectar predicted targeting categoryother localisation
Exons3
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.7622714-CDS-H-akashiwo_Contig94:1728225..17283581681388050.7622714-CDS-H-akashiwo_Contig94:1728225..1728358Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 1728226..1728358 -
1681388050.7733135-CDS-H-akashiwo_Contig94:1728785..17288971681388050.7733135-CDS-H-akashiwo_Contig94:1728785..1728897Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 1728786..1728897 -
1681388050.7834334-CDS-H-akashiwo_Contig94:1729776..17298401681388050.7834334-CDS-H-akashiwo_Contig94:1729776..1729840Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 1729777..1729840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig94.39.1prot_H-akashiwo_Contig94.39.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig94 1728226..1729840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig94.39.1

>prot_H-akashiwo_Contig94.39.1 ID=prot_H-akashiwo_Contig94.39.1|Name=mRNA_H-akashiwo_Contig94.39.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=103bp
QRVQRRLERALARADAWVENGVTEELPMLNGGCLEAVRRCLPLMVSHKMP
PCCSAKLAGRGIAGLEDNSKIVVPAVAQAAASAELTAIDEEGRQPSAEKK
EKA
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mRNA from alignment at H-akashiwo_Contig94:1728225..1729840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig94.39.1 ID=mRNA_H-akashiwo_Contig94.39.1|Name=mRNA_H-akashiwo_Contig94.39.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1616bp|location=Sequence derived from alignment at H-akashiwo_Contig94:1728225..1729840- (Heterosigma akashiwo CCMP452)
CAGCGGGTGCAGCGGCGGCTGGAGAGAGCCCTGGCGCGGGCGGACGCCTG
GGTTGAAAATGGCGGTGGGTGCTAATTAAAAGTGTATATGTGTACACCGT
AGCAATCATGACCAGCATTACAAAGACCAGCTACTGCTGCTTTTGCTCGT
GCTGAATCACCCTCTGTTTTGAATTCAACGAACACGTGCTCCGCCGGAAT
CCATAACGGAAATGATTGCAGGGTGTTGAGTTTGAACAGAAAACCGCTTC
CATCATTGGTGAGTGTGGTGTGCAATAGCTCCTCGTTGCCAAAAGGGAAT
ACAGCATAGTTGTCATGGAGTTATAATGATTTAAAAACCTTTGACACGTT
GCTTTCTTGGTATTATGGAGCTATACTCACTGATGGAGGCGTTTTTTTTT
CTGTTTAAACCCAACACCCTGTAATGTCAAAGGTTTTTAAATCACAACTA
TGCTGCATTTCGGCTATTAAAAGCCACGGCTGGTGGCTCTGGTCCTTCCT
CCACCAGCCTTCTTCAGGCTGCCTCTGAGTAAATGATACAGTAGAGTATC
ATTTAAAAAAAGAAGAAGAGTGGATGTGTAAACAAAAAATGAAAGCAGTA
CCGGCAGACGGGCCACCACCACCACCAGCTAATCCTTGCTTCATGTGCCC
CAGCTCTTAACTGAAAACGACAACATACTTAAAGAAACATTCTGCCCTCC
ATCTCCACTGTGTTCATAATTACAGAAATGATATGTCTTCTTATTTTTAG
TGGTTGTATGTGTGATGAAACTATTTCTCCTCCCCCCCCTGAATCTGTGC
TTGGATACAGTTCACTCAAAATATAAATCTCTATGTGCAATACCCATATG
ACAAGCAGCTATAATTCAGTATGTTTTATAGGTTCTTCGCATGAATTTTA
GTAGTGACATCTTGTCCTTGCCCCTACTTGTCACCCAACCTAGTAACGGA
AGAACTACCAATGCTGAATGGAGGGTGTTTGGAAGCAGTGCGGCGCTGTC
TGCCACTCATGGTTTCTCACAAAATGCCCCCCTGCTGCTCAGCCAAACTT
GCCGGGTGGGTAAAACATTATTTGCCTCTCAACAGCAGCACACACAAGGA
TACCTTCCTCATTCATCTTTCGCCCAACTCCCAGGCAACTTTCAAAAGAC
GCTACAGAGCTAGAACCCAGGGCATGTGGAACGATCTGAAGCACCTCACT
GTCCAACAGTAGCTCACACAAGGATACTTTATTCCTAGAAGCCACCAAAA
TTATTATAATGATAAATAAACATTTATTTTTTGTCACTTTAATGCTAAAG
CACGGGGGCAGAAGACGACAGTAGTACACACATGGACAAAAATAGTGGAG
GAAGAAATAGTTTCAATGGGCAATTCGGTGTCACTTCAATACTTGTGTGT
GGCATCGTCCAGCAGCTGCAGCTAGACGTCGCCAAGACTGGCCCTCTTAC
TTCGTCTCCTTCTTTTGTTTGCCCGGCGGCAGGCGCGGCATTGCAGGGCT
GGAGGACAACAGTAAGATTGTGGTGCCGGCGGTGGCTCAAGCGGCAGCCT
CGGCCGAACTCACTGCAATAGACGAGGAGGGGCGGCAGCCGAGCGCGGAG
AAGAAAGAAAAAGCCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig94:1728225..1729840-

>mRNA_H-akashiwo_Contig94.39.1 ID=mRNA_H-akashiwo_Contig94.39.1|Name=mRNA_H-akashiwo_Contig94.39.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=309bp|location=Sequence derived from alignment at H-akashiwo_Contig94:1728225..1729840- (Heterosigma akashiwo CCMP452)
CAGCGGGTGCAGCGGCGGCTGGAGAGAGCCCTGGCGCGGGCGGACGCCTG
GGTTGAAAATGGCGTAACGGAAGAACTACCAATGCTGAATGGAGGGTGTT
TGGAAGCAGTGCGGCGCTGTCTGCCACTCATGGTTTCTCACAAAATGCCC
CCCTGCTGCTCAGCCAAACTTGCCGGGCGCGGCATTGCAGGGCTGGAGGA
CAACAGTAAGATTGTGGTGCCGGCGGTGGCTCAAGCGGCAGCCTCGGCCG
AACTCACTGCAATAGACGAGGAGGGGCGGCAGCCGAGCGCGGAGAAGAAA
GAAAAAGCC
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