mRNA_H-akashiwo_Contig94.37.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig94.37.1
Unique NamemRNA_H-akashiwo_Contig94.37.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig94.37.1 vs. uniprot
Match: A0A6V1VIV0_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VIV0_HETAK)

HSP 1 Score: 352 bits (904), Expect = 2.530e-119
Identity = 171/189 (90.48%), Postives = 175/189 (92.59%), Query Frame = -1
Query:    1 RSLPIFSAERESNSLYLQAPMSKLFHEALHHHLVKEGPGPLSLRDKVRIRSCAGPGAGNWFEARPVCHAMSLSNPAISVAFRWRFGLALVHDPSLRCTCGVQIDREGDHFQRCMVGGHHITRHHALRGATASLFRQVAVIQEERHASTIGPVHPGDADLRLGIVADDGHTRSSTTYFMADVTITHPVSS 567
            RSLPI SAERES+S YLQAP SK  HEALHHHLVKEGPGP+SLRDK RIRSCAGPGAGNW EARPVCHAMSLSNPAISVAFRWRFGLALVHDPSLRC CG QIDREGDHFQRCMVGGHH+TRHHALRGATASLFR VAVIQEERHAS+IG VHP DA LRL IVADDGHTRSSTTYFMADVTITHPVSS
Sbjct:   84 RSLPICSAERESDSHYLQAPTSKHLHEALHHHLVKEGPGPISLRDKARIRSCAGPGAGNWLEARPVCHAMSLSNPAISVAFRWRFGLALVHDPSLRCACGKQIDREGDHFQRCMVGGHHVTRHHALRGATASLFRHVAVIQEERHASSIGTVHPEDAGLRLDIVADDGHTRSSTTYFMADVTITHPVSS 272          
BLAST of mRNA_H-akashiwo_Contig94.37.1 vs. uniprot
Match: A0A7S4DEC7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEC7_HETAK)

HSP 1 Score: 335 bits (859), Expect = 9.150e-115
Identity = 166/186 (89.25%), Postives = 171/186 (91.94%), Query Frame = -1
Query:    1 PIFSAERESNSLYLQAPMSKLFHEALHHHLVKEGPGPLSLRDKVRIRSCAGPGAGNWFEARPVCHAMSLSNPAISVAFRWRFGLALVHDPSLRCTCGVQIDREGDHFQRCMVGGHHITRHHALRGATASLFRQVAVIQEERHASTIGPVHPGDADLRLGIVADDGHTRSSTTYFMADVTITHPVSS 558
            PI SAERES+S YLQAPMSK F+EAL   LVK+GPGPLSLRDK RIRSCAGPGAGNW EARPVCHAMSLSNPAISVAFRWRFGLALVHDPSLRC CG QIDREGDHFQRCMVGGHH+TRHHALRGATASLFR VAVIQEERHAS+IG VHP DA LRL IVADDGHTRSSTTYFMADVTITHPVSS
Sbjct:   12 PICSAERESDSHYLQAPMSKHFYEAL---LVKKGPGPLSLRDKARIRSCAGPGAGNWLEARPVCHAMSLSNPAISVAFRWRFGLALVHDPSLRCACGKQIDREGDHFQRCMVGGHHVTRHHALRGATASLFRHVAVIQEERHASSIGTVHPEDAGLRLDIVADDGHTRSSTTYFMADVTITHPVSS 194          
BLAST of mRNA_H-akashiwo_Contig94.37.1 vs. uniprot
Match: A0A7S3Y8H2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8H2_HETAK)

HSP 1 Score: 324 bits (830), Expect = 2.850e-111
Identity = 158/173 (91.33%), Postives = 162/173 (93.64%), Query Frame = -1
Query:    1 LQAPMSKLFHEALHHHLVKEGPGPLSLRDKVRIRSCAGPGAGNWFEARPVCHAMSLSNPAISVAFRWRFGLALVHDPSLRCTCGVQIDREGDHFQRCMVGGHHITRHHALRGATASLFRQVAVIQEERHASTIGPVHPGDADLRLGIVADDGHTRSSTTYFMADVTITHPVSS 519
            LQAPMSK F+EAL   LVK+GPGPLSLRDK RIRSCAGPGAGNW EARPVCHAMSLSNPAISVAFRWRFGLALVHDPSLRC CG QIDREGDHFQRCMVGGHH+TRHHALRGATASLFR VAVIQEERHASTIGPVHPGDA LRL IVA+DGHTRSSTTYFMADVTITHPVSS
Sbjct:    1 LQAPMSKHFYEAL---LVKKGPGPLSLRDKARIRSCAGPGAGNWLEARPVCHAMSLSNPAISVAFRWRFGLALVHDPSLRCACGKQIDREGDHFQRCMVGGHHVTRHHALRGATASLFRHVAVIQEERHASTIGPVHPGDAGLRLDIVAEDGHTRSSTTYFMADVTITHPVSS 170          
BLAST of mRNA_H-akashiwo_Contig94.37.1 vs. uniprot
Match: A0A7S4DDA5_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDA5_HETAK)

HSP 1 Score: 223 bits (569), Expect = 2.170e-69
Identity = 112/184 (60.87%), Postives = 126/184 (68.48%), Query Frame = -1
Query:    4 IFSAERESNSLYLQAPMSKLFHEALHHHLVKEGPGPLSLRDKVRIRSCAGPGAGNWFEARPVCHAMSLSNPAISVAFRWRFGLALVHDPSLRCTCGVQIDREGDHFQRCMVGGHHITRHHALRGATASLFRQVAVIQEERHASTIGPVHPGDADLRLGIVADDGHTRSSTTYFMADVTITHPVS 555
            +   E +   LY QAPMS++FH+A    L+KEG G L LRDK RIRS AGPGAGNW EARPV  AM++SNPAI  AFRWRFGL L HDPSLRC CG  +D  GDHFQ C +GGH   RH   R   ASL R V  +QEERH  TIG V P  A+ R+ IV DDG+ RS T Y MADVT THPVS
Sbjct:   74 LLCTEIQRPELYFQAPMSRIFHQAQLQDLLKEGEGSLPLRDKARIRSAAGPGAGNWLEARPVTQAMTMSNPAIGTAFRWRFGLPLSHDPSLRCLCGQPVDALGDHFQLCNLGGHRQFRHDGCRRIVASLCRLVGTVQEERHMHTIGTVPPEMANHRIDIVMDDGYNRSPTLYNMADVTFTHPVS 257          
BLAST of mRNA_H-akashiwo_Contig94.37.1 vs. uniprot
Match: A0A7S3Y6X4_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6X4_HETAK)

HSP 1 Score: 219 bits (558), Expect = 1.130e-68
Identity = 110/184 (59.78%), Postives = 128/184 (69.57%), Query Frame = -1
Query:   13 SLPIFSAERESNSLYLQAPMSKLFHEALHHHLVKEGPGPLSLRDKVRIRSCAGPGAGNWFEARPVCHAMSLSNPAISVAFRWRFGLALVHDPSLRCTCGVQIDREGDHFQRCMVGGHHITRHHALRGATASLFRQVAVIQEERHASTIGPVHPGDADLRLGIVADDGHTRSSTTYFMADVTITH 564
            SL ++S E+ S+  Y QAPMS++FH+A    L+KEG G L LRDK RIRS AGPGAGNW EARPV  AM++SNPAI  AFRWRFGL L HDPSLRC CG  +D  GDHFQ C +GGH   RH   R   ASL R V  +QEERH  TIG V P  A+ R+ IV DDG+ RS+T Y +A VT TH
Sbjct:   91 SLLLYSVEKFSDLNYFQAPMSRIFHQAQLQDLLKEGEGSLPLRDKARIRSAAGPGAGNWLEARPVTQAMTMSNPAIGTAFRWRFGLPLSHDPSLRCLCGQPVDALGDHFQLCNLGGHRQFRHDGCRRIVASLCRLVGTVQEERHMHTIGTVPPEMANHRIDIVMDDGYNRSTTLYNIAGVTFTH 274          
BLAST of mRNA_H-akashiwo_Contig94.37.1 vs. uniprot
Match: A0A7S3Y765_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y765_HETAK)

HSP 1 Score: 199 bits (505), Expect = 1.630e-60
Identity = 99/173 (57.23%), Postives = 114/173 (65.90%), Query Frame = -1
Query:   37 IFSAERESNSLYLQAPMSKLFHEALHHHLVKEGPGPLSLRDKVRIRSCAGPGAGNWFEARPVCHAMSLSNPAISVAFRWRFGLALVHDPSLRCTCGVQIDREGDHFQRCMVGGHHITRHHALRGATASLFRQVAVIQEERHASTIGPVHPGDADLRLGIVADDGHTRSSTTYF 555
            +   E +   LY QAPMS++FH+A    L+KEG G L LRDK RIRS AGPGAGNW EARPV  AM++S PAI  AF WRFGL L HDPSLRC CG  +D  GDHFQ C +GGH   RH   R   ASL R V  +QEERH  TIG V P  A+ R+ I  DDG+  SST Y+
Sbjct:   74 LLCTEIQRPELYFQAPMSRIFHQAQLQDLLKEGEGSLPLRDKARIRSAAGPGAGNWLEARPVTQAMTISIPAIGTAFIWRFGLPLSHDPSLRCLCGQPVDALGDHFQLCNLGGHRQFRHDGCRRIVASLCRLVGTVQEERHMHTIGTVPPEMANHRIDIAMDDGYNHSSTLYY 246          
BLAST of mRNA_H-akashiwo_Contig94.37.1 vs. uniprot
Match: A0A7S3UXF3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXF3_HETAK)

HSP 1 Score: 182 bits (462), Expect = 8.950e-56
Identity = 98/127 (77.17%), Postives = 106/127 (83.46%), Query Frame = 1
Query:    1 GGHRVGDGHIRHEISGG-TAGMTVIRNDA*AKVSVSGVNRADGAGVALFLNNSDLAEE-GGSCPAERMMP-GDMVASNHAALEVVPLSVDLHAAGAAEGGVVDQREPKPPPEGYGDGRVGQGHGMAN 372
            GGHR+GDGHIRHE+SGG TAGMTVIRND  AK  VSGVN AD AGVALFLNNSDL EE GGSCPAE MMP  D+VASN AALEVVPLS+D  AAG   GGV+DQ E +PPPEGYGDGRVGQGHG+ +
Sbjct:   27 GGHRLGDGHIRHEVSGGGTAGMTVIRNDVQAKAGVSGVNWADSAGVALFLNNSDLVEEEGGSCPAESMMPEDDVVASNEAALEVVPLSIDALAAGTTAGGVMDQCESEPPPEGYGDGRVGQGHGLTD 153          
BLAST of mRNA_H-akashiwo_Contig94.37.1 vs. uniprot
Match: A0A7S3UZ40_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZ40_HETAK)

HSP 1 Score: 182 bits (462), Expect = 3.090e-55
Identity = 98/127 (77.17%), Postives = 106/127 (83.46%), Query Frame = 1
Query:    1 GGHRVGDGHIRHEISGG-TAGMTVIRNDA*AKVSVSGVNRADGAGVALFLNNSDLAEE-GGSCPAERMMP-GDMVASNHAALEVVPLSVDLHAAGAAEGGVVDQREPKPPPEGYGDGRVGQGHGMAN 372
            GGHR+GDGHIRHE+SGG TAGMTVIRND  AK  VSGVN AD AGVALFLNNSDL EE GGSCPAE MMP  D+VASN AALEVVPLS+D  AAG   GGV+DQ E +PPPEGYGDGRVGQGHG+ +
Sbjct:   66 GGHRLGDGHIRHEVSGGGTAGMTVIRNDVQAKAGVSGVNWADSAGVALFLNNSDLVEEEGGSCPAESMMPEDDVVASNEAALEVVPLSIDALAAGTTAGGVMDQCESEPPPEGYGDGRVGQGHGLTD 192          
BLAST of mRNA_H-akashiwo_Contig94.37.1 vs. uniprot
Match: A0A7S3UX93_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX93_HETAK)

HSP 1 Score: 156 bits (394), Expect = 4.020e-46
Identity = 78/104 (75.00%), Postives = 87/104 (83.65%), Query Frame = 1
Query:   61 MTVIRNDA*AKVSVSGVNRADGAGVALFLNNSDLAEEGGSCPAERMMPGDMVASNHAALEVVPLSVDLHAAGAAEGGVVDQREPKPPPEGYGDGRVGQGHGMAN 372
            MT+IRND  AK   SGVNRADGAGVALFL+NSD AE GGSCPAE M+PGD+VASN AALEVVPLS+D  AAG   GGV+DQ E +PPPEGYGDGRVGQGHG+ +
Sbjct:    1 MTIIRNDVQAKAGASGVNRADGAGVALFLDNSDQAEVGGSCPAESMVPGDVVASNEAALEVVPLSIDALAAGTTAGGVMDQCESEPPPEGYGDGRVGQGHGLTD 104          
BLAST of mRNA_H-akashiwo_Contig94.37.1 vs. uniprot
Match: A0A7S3Y3Y0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3Y0_HETAK)

HSP 1 Score: 149 bits (377), Expect = 1.430e-43
Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 1
Query:  310 PKPPPEGYGDGRVGQGHGMANRSGFEPVASSWACAGANANLIPKRKGAGTFLDQVVVEGLMKEFGHGGLEVEGIALPLGREDGKGSG 570
            PKPPPEGYGDG+VGQGHG+ANRSGFEPVASSWAC GA+A LIPK KGAG FLDQVVVEGLMK FGHGGLEV GIALPL  E+G+GSG
Sbjct:    1 PKPPPEGYGDGQVGQGHGIANRSGFEPVASSWACTGADAGLIPKGKGAGAFLDQVVVEGLMKVFGHGGLEVLGIALPLSGENGEGSG 87          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig94.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6V1VIV0_HETAK2.530e-11990.48Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S4DEC7_HETAK9.150e-11589.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y8H2_HETAK2.850e-11191.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DDA5_HETAK2.170e-6960.87Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6X4_HETAK1.130e-6859.78Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3Y765_HETAK1.630e-6057.23Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3UXF3_HETAK8.950e-5677.17Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3UZ40_HETAK3.090e-5577.17Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3UX93_HETAK4.020e-4675.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y3Y0_HETAK1.430e-4385.06Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig94contigH-akashiwo_Contig94:1715054..1715623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size570
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.9101465-UTR-H-akashiwo_Contig94:1715053..17152481681388050.9101465-UTR-H-akashiwo_Contig94:1715053..1715248Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig94 1715054..1715248 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.919579-CDS-H-akashiwo_Contig94:1715248..17156231681388050.919579-CDS-H-akashiwo_Contig94:1715248..1715623Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 1715249..1715623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig94.37.1prot_H-akashiwo_Contig94.37.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig94 1715249..1715623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig94.37.1

>prot_H-akashiwo_Contig94.37.1 ID=prot_H-akashiwo_Contig94.37.1|Name=mRNA_H-akashiwo_Contig94.37.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=125bp
MMPGDMVASNHAALEVVPLSVDLHAAGAAEGGVVDQREPKPPPEGYGDGR
VGQGHGMANRSGFEPVASSWACAGANANLIPKRKGAGTFLDQVVVEGLMK
EFGHGGLEVEGIALPLGREDGKGSG
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mRNA from alignment at H-akashiwo_Contig94:1715054..1715623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig94.37.1 ID=mRNA_H-akashiwo_Contig94.37.1|Name=mRNA_H-akashiwo_Contig94.37.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=570bp|location=Sequence derived from alignment at H-akashiwo_Contig94:1715054..1715623+ (Heterosigma akashiwo CCMP452)
GGAGGACACCGGGTGGGTGATGGTCACATCCGCCATGAAATAAGTGGTGG AACTGCGGGTATGACCGTCATCCGCAACGATGCCTAAGCGAAGGTCAGCG TCTCCGGGGTGAACCGGGCCGATGGTGCTGGCGTGGCGCTCTTCTTGAAT AACAGCGACCTGGCGGAAGAGGGAGGCAGTTGCCCCGCGGAGCGCATGAT GCCGGGTGATATGGTGGCCTCCAACCATGCAGCGCTGGAAGTGGTCCCCC TCTCTGTCGATTTGCACGCCGCAGGTGCAGCGGAGGGAGGGGTCGTGGAC CAGCGCGAGCCCAAACCTCCACCTGAAGGCTACGGAGATGGCCGGGTTGG ACAAGGACATGGCATGGCAAACAGGTCTGGCTTCGAACCAGTTGCCAGCT CCTGGGCCTGCGCAGGAGCGAATGCGAACCTTATCCCGAAGAGAAAGGGG GCCGGGACCTTCCTTGACCAGGTGGTGGTGGAGGGCCTCATGAAAGAGTT TGGACATGGGGGCCTGGAGGTAGAGGGAATTGCTCTCCCTCTCGGCAGAG AAGATGGGAAGGGATCTGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig94:1715054..1715623+

>mRNA_H-akashiwo_Contig94.37.1 ID=mRNA_H-akashiwo_Contig94.37.1|Name=mRNA_H-akashiwo_Contig94.37.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=375bp|location=Sequence derived from alignment at H-akashiwo_Contig94:1715054..1715623+ (Heterosigma akashiwo CCMP452)
ATGATGCCGGGTGATATGGTGGCCTCCAACCATGCAGCGCTGGAAGTGGT
CCCCCTCTCTGTCGATTTGCACGCCGCAGGTGCAGCGGAGGGAGGGGTCG
TGGACCAGCGCGAGCCCAAACCTCCACCTGAAGGCTACGGAGATGGCCGG
GTTGGACAAGGACATGGCATGGCAAACAGGTCTGGCTTCGAACCAGTTGC
CAGCTCCTGGGCCTGCGCAGGAGCGAATGCGAACCTTATCCCGAAGAGAA
AGGGGGCCGGGACCTTCCTTGACCAGGTGGTGGTGGAGGGCCTCATGAAA
GAGTTTGGACATGGGGGCCTGGAGGTAGAGGGAATTGCTCTCCCTCTCGG
CAGAGAAGATGGGAAGGGATCTGGG
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