mRNA_H-akashiwo_Contig94.36.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig94.36.1
Unique NamemRNA_H-akashiwo_Contig94.36.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig94.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig94contigH-akashiwo_Contig94:1679531..1680447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size917
Hectar predicted targeting categoryother localisation
Exons1
Cds size768
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.856267-UTR-H-akashiwo_Contig94:1679530..16796231681388050.856267-UTR-H-akashiwo_Contig94:1679530..1679623Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig94 1679531..1679623 +
1681388050.8806674-UTR-H-akashiwo_Contig94:1680391..16804471681388050.8806674-UTR-H-akashiwo_Contig94:1680391..1680447Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig94 1680392..1680447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.8708303-CDS-H-akashiwo_Contig94:1679623..16803911681388050.8708303-CDS-H-akashiwo_Contig94:1679623..1680391Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 1679624..1680391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig94.36.1prot_H-akashiwo_Contig94.36.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig94 1679624..1680391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig94.36.1

>prot_H-akashiwo_Contig94.36.1 ID=prot_H-akashiwo_Contig94.36.1|Name=mRNA_H-akashiwo_Contig94.36.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=256bp
MYDFLAPRRERLVVPQPPQEVQLWRAKVRSEWVREKPASSCHHASQSVLD
LSPFPNAIIGMDCLSGEAKTSGGSRVQASKQWPGGASFLPYSSDNPVHYF
GPRPQVTTSELACCETKGGQQAATRKSSPEKGLVGRIQRPRLQANNDVSN
HQATSSSCFSLGGRSILMPAAPVIHQRVCRGGRIGIARLSAMSAARGARV
QPLPVEGNRTNQIDRGTTSVLRAAKARGSTDLQSEQGGNQEGTPGKTPAP
YYAQS*
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mRNA from alignment at H-akashiwo_Contig94:1679531..1680447+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig94.36.1 ID=mRNA_H-akashiwo_Contig94.36.1|Name=mRNA_H-akashiwo_Contig94.36.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=917bp|location=Sequence derived from alignment at H-akashiwo_Contig94:1679531..1680447+ (Heterosigma akashiwo CCMP452)
TTTTTCACAGCTGAGAAACGGCCCTTTGTCGCGCCTGTGGCAACCCTTTG
CGTTTTGGGGATACACGTCGCTGTCCAGTGTTACTTCCTGATCATGTATG
ATTTCCTCGCGCCCCGTCGTGAAAGGTTGGTGGTGCCCCAGCCGCCGCAG
GAGGTGCAGCTCTGGAGAGCCAAGGTGCGCTCGGAATGGGTGAGGGAAAA
GCCCGCTTCGAGCTGCCACCACGCCTCTCAAAGCGTTCTCGACCTTTCCC
CATTTCCAAATGCCATCATCGGGATGGACTGCTTGTCTGGGGAAGCCAAG
ACGAGTGGTGGATCTAGGGTACAGGCATCAAAGCAGTGGCCTGGCGGGGC
TTCTTTCCTCCCATATTCCTCCGACAACCCCGTTCATTACTTCGGGCCGC
GACCCCAAGTCACGACCAGTGAACTGGCTTGCTGCGAAACAAAAGGAGGC
CAGCAGGCCGCAACCAGAAAGAGCTCGCCAGAAAAGGGGTTGGTGGGCCG
AATTCAAAGACCCAGGCTTCAAGCGAATAATGATGTTAGCAACCATCAGG
CAACGAGCTCCAGCTGTTTCTCGCTTGGTGGGCGTAGCATACTGATGCCG
GCAGCCCCCGTCATCCACCAGCGAGTTTGCCGAGGAGGAAGGATCGGCAT
CGCTCGTCTATCTGCAATGTCTGCTGCGCGTGGGGCGCGGGTGCAGCCCC
TGCCAGTAGAAGGTAACCGAACAAATCAAATTGATAGGGGCACCACCTCA
GTGCTGCGGGCCGCCAAGGCACGGGGCAGTACGGACCTACAGTCAGAGCA
AGGAGGCAACCAGGAGGGCACGCCTGGCAAGACTCCTGCACCTTATTATG
CACAATCGTGATGACTTTCGATTCCCTCCCTAGGGATCCAGGAGCTGGCC
CCAAAGTTTGACCAGTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig94:1679531..1680447+

>mRNA_H-akashiwo_Contig94.36.1 ID=mRNA_H-akashiwo_Contig94.36.1|Name=mRNA_H-akashiwo_Contig94.36.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=768bp|location=Sequence derived from alignment at H-akashiwo_Contig94:1679531..1680447+ (Heterosigma akashiwo CCMP452)
ATGTATGATTTCCTCGCGCCCCGTCGTGAAAGGTTGGTGGTGCCCCAGCC
GCCGCAGGAGGTGCAGCTCTGGAGAGCCAAGGTGCGCTCGGAATGGGTGA
GGGAAAAGCCCGCTTCGAGCTGCCACCACGCCTCTCAAAGCGTTCTCGAC
CTTTCCCCATTTCCAAATGCCATCATCGGGATGGACTGCTTGTCTGGGGA
AGCCAAGACGAGTGGTGGATCTAGGGTACAGGCATCAAAGCAGTGGCCTG
GCGGGGCTTCTTTCCTCCCATATTCCTCCGACAACCCCGTTCATTACTTC
GGGCCGCGACCCCAAGTCACGACCAGTGAACTGGCTTGCTGCGAAACAAA
AGGAGGCCAGCAGGCCGCAACCAGAAAGAGCTCGCCAGAAAAGGGGTTGG
TGGGCCGAATTCAAAGACCCAGGCTTCAAGCGAATAATGATGTTAGCAAC
CATCAGGCAACGAGCTCCAGCTGTTTCTCGCTTGGTGGGCGTAGCATACT
GATGCCGGCAGCCCCCGTCATCCACCAGCGAGTTTGCCGAGGAGGAAGGA
TCGGCATCGCTCGTCTATCTGCAATGTCTGCTGCGCGTGGGGCGCGGGTG
CAGCCCCTGCCAGTAGAAGGTAACCGAACAAATCAAATTGATAGGGGCAC
CACCTCAGTGCTGCGGGCCGCCAAGGCACGGGGCAGTACGGACCTACAGT
CAGAGCAAGGAGGCAACCAGGAGGGCACGCCTGGCAAGACTCCTGCACCT
TATTATGCACAATCGTGA
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