mRNA_H-akashiwo_Contig94.24.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig94.24.1
Unique NamemRNA_H-akashiwo_Contig94.24.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig94.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig94contigH-akashiwo_Contig94:1197219..1197936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size720
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.8131397-CDS-H-akashiwo_Contig94:1197218..11976291681388050.8131397-CDS-H-akashiwo_Contig94:1197218..1197629Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 1197219..1197629 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.8243635-UTR-H-akashiwo_Contig94:1197629..11979361681388050.8243635-UTR-H-akashiwo_Contig94:1197629..1197936Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig94 1197630..1197936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig94.24.1prot_H-akashiwo_Contig94.24.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig94 1197219..1197629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig94.24.1

>prot_H-akashiwo_Contig94.24.1 ID=prot_H-akashiwo_Contig94.24.1|Name=mRNA_H-akashiwo_Contig94.24.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=137bp
NGDLFCAYQSFSGAISECYGSDALEDCEDACDSGNGEVFWSFYDCMWAYF
HVSYTTYGVCTNATYASSVDDSSECIYYDDDGVAWTQDSESSYASFTEAC
EDLNGAAPSAGRKLIAAMVVANGLLVVATFLATTLL*
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mRNA from alignment at H-akashiwo_Contig94:1197219..1197936+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig94.24.1 ID=mRNA_H-akashiwo_Contig94.24.1|Name=mRNA_H-akashiwo_Contig94.24.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=718bp|location=Sequence derived from alignment at H-akashiwo_Contig94:1197219..1197936+ (Heterosigma akashiwo CCMP452)
AATGGGGATCTATTTTGTGCTTACCAATCCTTTTCGGGAGCCATTTCGGA
ATGTTATGGTTCTGATGCCCTGGAGGACTGTGAAGATGCCTGTGATTCAG
GTAACGGTGAAGTATTCTGGTCGTTCTATGATTGTATGTGGGCATACTTT
CACGTATCGTACACTACATATGGGGTGTGCACTAATGCCACTTACGCTAG
TAGCGTGGATGACAGCAGCGAATGCATTTACTACGATGATGATGGAGTTG
CTTGGACTCAGGATTCGGAATCTTCATACGCATCGTTCACGGAAGCGTGC
GAAGATCTGAACGGCGCAGCACCCTCTGCTGGACGCAAGCTAATTGCCGC
GATGGTGGTCGCAAATGGGCTCCTGGTGGTTGCAACGTTCTTGGCGACAA
CCTTATTGTAGGAGGGTGAATTTTTGGCGTTTGATCGCCCTAGCAGCAAT
AAATGATACCGCCGTTCTTTGGGACAGACTTACTGTAGTAGGGATGAACC
AGAGTGGCTGGAAATATAATACTGAAGAAGACCGGACTCTCAATCGAAAA
AATATTTTATAGTTCTAATGAAGTTCTTCTATCTCATGAATTACAACAAA
AAGTGTCCTTCCGGTCAACTATCTGTCATTGCAGGGTGTTGGGTCTAAAC
AGATGACCGCTTTCGACATCAGTGAATATAGTTCCACACTGCCAAGAAGG
CAATATGTCGAAGGATTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig94:1197219..1197936+

>mRNA_H-akashiwo_Contig94.24.1 ID=mRNA_H-akashiwo_Contig94.24.1|Name=mRNA_H-akashiwo_Contig94.24.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=411bp|location=Sequence derived from alignment at H-akashiwo_Contig94:1197219..1197936+ (Heterosigma akashiwo CCMP452)
AATGGGGATCTATTTTGTGCTTACCAATCCTTTTCGGGAGCCATTTCGGA
ATGTTATGGTTCTGATGCCCTGGAGGACTGTGAAGATGCCTGTGATTCAG
GTAACGGTGAAGTATTCTGGTCGTTCTATGATTGTATGTGGGCATACTTT
CACGTATCGTACACTACATATGGGGTGTGCACTAATGCCACTTACGCTAG
TAGCGTGGATGACAGCAGCGAATGCATTTACTACGATGATGATGGAGTTG
CTTGGACTCAGGATTCGGAATCTTCATACGCATCGTTCACGGAAGCGTGC
GAAGATCTGAACGGCGCAGCACCCTCTGCTGGACGCAAGCTAATTGCCGC
GATGGTGGTCGCAAATGGGCTCCTGGTGGTTGCAACGTTCTTGGCGACAA
CCTTATTGTAG
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