mRNA_H-akashiwo_Contig94.19.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig94.19.1
Unique NamemRNA_H-akashiwo_Contig94.19.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig94.19.1 vs. uniprot
Match: A0A7S3XRE8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRE8_HETAK)

HSP 1 Score: 142 bits (358), Expect = 7.370e-42
Identity = 76/88 (86.36%), Postives = 84/88 (95.45%), Query Frame = 1
Query:   34 TPAGLLVLAGSLAGVDKDFTESKGKVARAVLGIALARFVCAPVVIFGLIRAFKVFGFMPADPVLLFVLLLESCMPSAQNSVVILQVEQ 297
            TPAG+LVLAGSLAGV+KDF E+KGK+AR +LGI+LARFVCAPV+IFGLI+AFK  GFMPADPVLLFVLLLESCMPSAQNSVVILQVEQ
Sbjct:    1 TPAGVLVLAGSLAGVNKDFAENKGKLARTLLGISLARFVCAPVIIFGLIQAFKAVGFMPADPVLLFVLLLESCMPSAQNSVVILQVEQ 88          
BLAST of mRNA_H-akashiwo_Contig94.19.1 vs. uniprot
Match: A0A7S2SS74_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS74_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 9.490e-16
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    7 ALRTLGAAYTPAGLLVLAGSL----------AGVDKDFTESKGKVARAVLGIALARFVCAPVVIFGLIRAFKVFGFMPADPVLLFVLLLESCMPSAQNSVVILQVE 294
            ALRTLG+AY PA +L LAG+L          A    D  E    +   V  + +ARF+  PV  +G++R     G +PADP+L FVLL+++CMPSAQNSVVILQ+E
Sbjct:  313 ALRTLGSAYVPAVILTLAGTLHQSVRSPSAVAAASNDKEEKTVSLGSRVAALMVARFLITPVTAYGMLRVCSHAGLIPADPLLRFVLLMQACMPSAQNSVVILQLE 418          
BLAST of mRNA_H-akashiwo_Contig94.19.1 vs. uniprot
Match: R1CQU2_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CQU2_EMIHU)

HSP 1 Score: 77.4 bits (189), Expect = 1.650e-14
Identity = 50/98 (51.02%), Postives = 65/98 (66.33%), Query Frame = 1
Query:   10 LRTLGAAYTPAGLLVLAGSLAGVDKDFTESKGKV---ARAVLGIALARFVCAPVVIFGLIRAFKVFGFMPADPVLLFVLLLESCMPSAQNSVVILQVE 294
            L  LG AY+PA LLVLAGSLA   +     +G++   A  V+ IA+ARF   P++ F L+ A    G +PADP+   VLLL+SCMPSAQNSV+ LQV+
Sbjct:  332 LEALGKAYSPAALLVLAGSLAAPTEQRRAGEGELGASASHVVAIAVARFCAVPLLSFALLHAALRAGLLPADPLRDLVLLLQSCMPSAQNSVLALQVD 429          
BLAST of mRNA_H-akashiwo_Contig94.19.1 vs. uniprot
Match: A0A7S2V2A0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2A0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 7.030e-14
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    7 ALRTLGAAYTPAGLLVLAGSLA-----GVDKDFTESKGKVARAVLGIALARFVCAPVVIFGLIRAFKVFGFMPADPVLLFVLLLESCMPSAQNSVVILQVE 294
            A   L  AY P GL++LAGSLA     G+DK+   +       +  I+L RFV  P++  GL+R     G    DPVLLFVL+++SCMPSAQN+V+ILQVE
Sbjct:   19 AAEALSKAYNPCGLIILAGSLALAPKGGIDKNMMGN-------ISVISLGRFVLTPLLTAGLLRLGINLGLSLHDPVLLFVLMMQSCMPSAQNNVLILQVE 112          
BLAST of mRNA_H-akashiwo_Contig94.19.1 vs. uniprot
Match: A0A6H5KMD6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMD6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.100e-13
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    7 ALRTLGAAYTPAGLLVLAGSLAGVD--KDFTESKGKVARAVLGIALARFVCAPVVIFGLIRAFKVFGFMPADPVLLFVLLLESCMPSAQNSVVILQV 291
            A   L AAYTP+G+LVLAGSLA     K F+    K    +L + +AR+   P+   GL+     +G +P DP+LLFVLL+ESCMPSAQN+V++LQV
Sbjct:  392 AFSNLTAAYTPSGVLVLAGSLANCPPGKWFSRDTQKT---ILAVGMARWFLLPLATSGLLFGGVKYGLVPPDPMLLFVLLIESCMPSAQNTVIMLQV 485          
BLAST of mRNA_H-akashiwo_Contig94.19.1 vs. uniprot
Match: A0A4D9D5S5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5S5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.780e-12
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    7 ALRTLGAAYTPAGLLVLAGSLAGVDKDFTESKGKVARAVLGIALARFVCAPVVIFGLIRAFKVFGFMPA-DPVLLFVLLLESCMPSAQNSVVILQVEQ 297
            ALRT+G+AY P  LL+L+GSLA   + F  +   V R  + +   RF   P V F  +   K  G +P  DP+LLFV+LL+ CMPSAQNSV+ILQ+E+
Sbjct:  330 ALRTMGSAYVPCVLLILSGSLAQGLEGFDSN---VFRRAMLVMFQRFCIMPAVAFACVETGKRTGLLPTQDPLLLFVILLQGCMPSAQNSVLILQLER 424          
BLAST of mRNA_H-akashiwo_Contig94.19.1 vs. uniprot
Match: W7U1P2_9STRA (Membrane transporter n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1P2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.580e-12
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 1
Query:    7 ALRTLGAAYTPAGLLVLAGSLAGVDKDFTESKGKVARAVLGIALARFVCAPVVIFGLIRAFKVFGFMPA-DPVLLFVLLLESCMPSAQNSVVILQVEQ 297
            ALRT+G+AY P  LLVLAGSLA   K        +      I  ARF   P   F L+   + F  +P+ DP+L FVLLL++CMP AQN+VVILQ++Q
Sbjct:  348 ALRTMGSAYLPTVLLVLAGSLAQGFKSLNLKDPALLSRTGAICFARFFLMPATAFLLLTLGRAFSLIPSSDPLLAFVLLLQACMPCAQNTVVILQLQQ 445          
BLAST of mRNA_H-akashiwo_Contig94.19.1 vs. uniprot
Match: A0A0G4EKC6_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EKC6_VITBC)

HSP 1 Score: 70.1 bits (170), Expect = 6.270e-12
Identity = 48/99 (48.48%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    7 ALRTLGAAYTPAGLLVLAGSL---AGVDKDFTESKGKVARAVLGIALARFVCAPVVIFGLIRAFKVFGFMPADPVLLFVLLLESCMPSAQNSVVILQVE 294
            AL+ LG  + PA  LVLAGS    +G + D   S     R VL +A ARFVCAP + F L+   +  G +  DP L FVLL++ CMP+AQ SVVILQ+E
Sbjct:  357 ALQILGQGFRPAAALVLAGSFVTPSGGESDTVISLRNFRR-VLPVAFARFVCAPTIAFTLLTIGRRLGLIMNDPFLWFVLLMQGCMPAAQQSVVILQLE 454          
BLAST of mRNA_H-akashiwo_Contig94.19.1 vs. uniprot
Match: A0A7S1ER62_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ER62_9RHOD)

HSP 1 Score: 69.7 bits (169), Expect = 8.600e-12
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    7 ALRTLGAAYTPAGLLVLAGSLAGVDKDFTESKGKVAR-----AVLGIALARFVCAPVVIFGLIRAFKVFGFMPADPVLLFVLLLESCMPSAQNSVVILQVE 294
            AL+TLG+AYTP  +LVLAGSLA   K  + S            + GI + RF+  P+   G +R   + G +  DP+  F +L+ES MPSAQNSV+ILQ+E
Sbjct:  367 ALKTLGSAYTPCAVLVLAGSLATPQKSASSSSSAAVSWSRIMQIAGICIVRFIFMPIFALGTLRTTALLGIL-LDPMQKFTILMESIMPSAQNSVLILQLE 466          
BLAST of mRNA_H-akashiwo_Contig94.19.1 vs. uniprot
Match: A0A7S2URC9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URC9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.180e-11
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    7 ALRTLGAAYTPAGLLVLAGSLAGVDKDF--------TESKGKVARA-VLGIALARFVCAPVVIFGLIRAFKVFGFMP--------ADPVLLFVLLLESCMPSAQNSVVILQVE 294
            AL TLG+AY PA +LVLAGSLAG             T S  K++ A V  I ++RF  AP++ FG+++   +   +P        A  V++FVLL+E CMP AQN+V+ILQ++
Sbjct:  331 ALSTLGSAYLPAAVLVLAGSLAGKKAPTPDGEATTTTTSNNKISPASVAAIMMSRFCLAPILSFGIVKLLDLLKLLPSAAGTGARARAVVMFVLLMEGCMPPAQNTVIILQLD 443          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig94.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XRE8_HETAK7.370e-4286.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SS74_9STRA9.490e-1647.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
R1CQU2_EMIHU1.650e-1451.02Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S2V2A0_9STRA7.030e-1447.52Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6H5KMD6_9PHAE1.100e-1349.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9D5S5_9STRA1.780e-1247.96Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
W7U1P2_9STRA4.580e-1247.96Membrane transporter n=3 Tax=Monodopsidaceae TaxID... [more]
A0A0G4EKC6_VITBC6.270e-1248.48Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S1ER62_9RHOD8.600e-1244.55Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S2URC9_9STRA2.180e-1142.48Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig94contigH-akashiwo_Contig94:870334..870630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G8U0
PFAMsMem_trans
Model size299
Max annot lvl2759|Eukaryota
KEGG koko:K07088
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.03e-15
EggNOG OGsCOG0679@1|root,KOG2722@2759|Eukaryota
Descriptionauxin efflux carrier
Cds size297
COG categoryB
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388051.3911235-CDS-H-akashiwo_Contig94:870333..8706301681388051.3911235-CDS-H-akashiwo_Contig94:870333..870630Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 870334..870630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig94.19.1prot_H-akashiwo_Contig94.19.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig94 870334..870630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig94.19.1

>prot_H-akashiwo_Contig94.19.1 ID=prot_H-akashiwo_Contig94.19.1|Name=mRNA_H-akashiwo_Contig94.19.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=99bp
MAALRTLGAAYTPAGLLVLAGSLAGVDKDFTESKGKVARAVLGIALARFV
CAPVVIFGLIRAFKVFGFMPADPVLLFVLLLESCMPSAQNSVVILQVEQ
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mRNA from alignment at H-akashiwo_Contig94:870334..870630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig94.19.1 ID=mRNA_H-akashiwo_Contig94.19.1|Name=mRNA_H-akashiwo_Contig94.19.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=297bp|location=Sequence derived from alignment at H-akashiwo_Contig94:870334..870630+ (Heterosigma akashiwo CCMP452)
ATGGCGGCGCTGCGCACGCTGGGGGCGGCCTACACACCGGCCGGCCTGCT GGTGCTCGCGGGCAGCCTGGCGGGCGTCGACAAGGACTTTACGGAGAGCA AGGGGAAAGTGGCCAGGGCCGTGCTGGGGATCGCTTTGGCCCGCTTTGTG TGCGCGCCGGTCGTCATTTTCGGCCTGATTCGAGCGTTCAAGGTGTTTGG GTTCATGCCCGCTGACCCGGTGCTGTTGTTTGTCCTGCTTCTCGAGAGCT GCATGCCGTCGGCGCAGAACAGCGTGGTGATTCTCCAGGTGGAGCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig94:870334..870630+

>mRNA_H-akashiwo_Contig94.19.1 ID=mRNA_H-akashiwo_Contig94.19.1|Name=mRNA_H-akashiwo_Contig94.19.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=297bp|location=Sequence derived from alignment at H-akashiwo_Contig94:870334..870630+ (Heterosigma akashiwo CCMP452)
ATGGCGGCGCTGCGCACGCTGGGGGCGGCCTACACACCGGCCGGCCTGCT
GGTGCTCGCGGGCAGCCTGGCGGGCGTCGACAAGGACTTTACGGAGAGCA
AGGGGAAAGTGGCCAGGGCCGTGCTGGGGATCGCTTTGGCCCGCTTTGTG
TGCGCGCCGGTCGTCATTTTCGGCCTGATTCGAGCGTTCAAGGTGTTTGG
GTTCATGCCCGCTGACCCGGTGCTGTTGTTTGTCCTGCTTCTCGAGAGCT
GCATGCCGTCGGCGCAGAACAGCGTGGTGATTCTCCAGGTGGAGCAG
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