mRNA_H-akashiwo_Contig94.18.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig94.18.1
Unique NamemRNA_H-akashiwo_Contig94.18.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig94.18.1 vs. uniprot
Match: A0A7S3XRL6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRL6_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 2.090e-14
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:   64 GLFFGYQAAVYGILDQPTRSALSKCTYSLFLPALLVVNV 180
            GLF GYQA+V G+LDQPTRSALSKCTYSLFLPALL+VNV
Sbjct:    1 GLFLGYQASVNGVLDQPTRSALSKCTYSLFLPALLLVNV 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig94.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XRL6_HETAK2.090e-1487.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig94contigH-akashiwo_Contig94:869599..869778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G8U0
PFAMsMem_trans
Model size182
Max annot lvl2759|Eukaryota
KEGG koko:K07088
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.38e-08
EggNOG OGsCOG0679@1|root,KOG2722@2759|Eukaryota
Descriptionauxin efflux carrier
Cds size180
COG categoryB
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388051.3463738-CDS-H-akashiwo_Contig94:869598..8697781681388051.3463738-CDS-H-akashiwo_Contig94:869598..869778Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 869599..869778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig94.18.1prot_H-akashiwo_Contig94.18.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig94 869599..869778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig94.18.1

>prot_H-akashiwo_Contig94.18.1 ID=prot_H-akashiwo_Contig94.18.1|Name=mRNA_H-akashiwo_Contig94.18.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=60bp
MGALDPQVLKVSARAVSEMLVGLFFGYQAAVYGILDQPTRSALSKCTYSL
FLPALLVVNV
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mRNA from alignment at H-akashiwo_Contig94:869599..869778+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig94.18.1 ID=mRNA_H-akashiwo_Contig94.18.1|Name=mRNA_H-akashiwo_Contig94.18.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=180bp|location=Sequence derived from alignment at H-akashiwo_Contig94:869599..869778+ (Heterosigma akashiwo CCMP452)
ATGGGAGCCTTAGATCCCCAGGTGCTAAAGGTATCTGCGCGTGCAGTAAG
TGAGATGCTGGTAGGGCTGTTCTTTGGTTATCAGGCTGCTGTGTACGGAA
TACTTGACCAGCCAACACGCTCTGCACTTTCGAAATGCACGTACAGCCTC
TTCTTGCCGGCCCTGCTGGTGGTGAATGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig94:869599..869778+

>mRNA_H-akashiwo_Contig94.18.1 ID=mRNA_H-akashiwo_Contig94.18.1|Name=mRNA_H-akashiwo_Contig94.18.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=180bp|location=Sequence derived from alignment at H-akashiwo_Contig94:869599..869778+ (Heterosigma akashiwo CCMP452)
ATGGGAGCCTTAGATCCCCAGGTGCTAAAGGTATCTGCGCGTGCAGTAAG
TGAGATGCTGGTAGGGCTGTTCTTTGGTTATCAGGCTGCTGTGTACGGAA
TACTTGACCAGCCAACACGCTCTGCACTTTCGAAATGCACGTACAGCCTC
TTCTTGCCGGCCCTGCTGGTGGTGAATGTG
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