mRNA_H-akashiwo_Contig94.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig94.11.1
Unique NamemRNA_H-akashiwo_Contig94.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig94.11.1 vs. uniprot
Match: A0A6V1QFH7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFH7_HETAK)

HSP 1 Score: 248 bits (633), Expect = 1.090e-79
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 3 
Query:   75 MCPSFSLFQLCLVLFLLPWGLKAYLQGVPSKIAGVMPQQLVDFQGRSVGSQPREGYLGRRRATLLFSAAGDFEKELDRLYLNSEKIKCPFFRRRAFEFLEAAKKTLLFLAARHKSLPGGLFEP 443
            MCPSFSLFQLCLVLFLLPWGLKAYLQGVPSKIAGVMPQQLVDFQGRSVGSQPREGYLGRRRATLLFSAAGDFEKELDRLYLNSEKIKCPFFRRRAFEFLEAAKKTLLFLAARHKSLPGGLFEP
Sbjct:    1 MCPSFSLFQLCLVLFLLPWGLKAYLQGVPSKIAGVMPQQLVDFQGRSVGSQPREGYLGRRRATLLFSAAGDFEKELDRLYLNSEKIKCPFFRRRAFEFLEAAKKTLLFLAARHKSLPGGLFEP 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig94.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V1QFH7_HETAK1.090e-79100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig94contigH-akashiwo_Contig94:398879..399450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0TQ73
Model size444
Max annot lvl159749.K0TQ73|-
Hectar predicted targeting categorysignal peptide
Exons2
Evalue5.06e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,2XGIE@2836|Bacillariophyta
Descriptiontransposition, RNA-mediated
Cds size369
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.6472442-UTR-H-akashiwo_Contig94:398878..3989521681388050.6472442-UTR-H-akashiwo_Contig94:398878..398952Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig94 398879..398952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.6627662-CDS-H-akashiwo_Contig94:398952..3992131681388050.6627662-CDS-H-akashiwo_Contig94:398952..399213Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 398953..399213 +
1681388050.6773758-CDS-H-akashiwo_Contig94:399342..3994501681388050.6773758-CDS-H-akashiwo_Contig94:399342..399450Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 399343..399450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig94.11.1prot_H-akashiwo_Contig94.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig94 398953..399450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig94.11.1

>prot_H-akashiwo_Contig94.11.1 ID=prot_H-akashiwo_Contig94.11.1|Name=mRNA_H-akashiwo_Contig94.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=123bp
MCPSFSLFQLCLVLFLLPWGLKAYLQGVPSKIAGVMPQQLVDFQGRSVGS
QPREGYLGRRRATLLFSAAGDFEKELDRLYLNSEKIKCPFFRRRAFEFLE
AAKKTLLFLAARHKSLPGGLFEP
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mRNA from alignment at H-akashiwo_Contig94:398879..399450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig94.11.1 ID=mRNA_H-akashiwo_Contig94.11.1|Name=mRNA_H-akashiwo_Contig94.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=572bp|location=Sequence derived from alignment at H-akashiwo_Contig94:398879..399450+ (Heterosigma akashiwo CCMP452)
CGCGATCTAATAGCAGCAAAATGATGGAAATTGCAATCGCCCAATGAGCG
AAGGGGCAAGTACAGAACGCCAAAATGTGCCCATCCTTTTCGCTTTTCCA
GCTATGCCTGGTGCTCTTTTTATTACCTTGGGGCCTCAAAGCCTATCTTC
AAGGAGTGCCATCAAAAATAGCGGGGGTAATGCCACAGCAGCTGGTTGAT
TTTCAGGGTCGCAGTGTGGGTTCACAGCCACGAGAGGGGTATCTGGGCAG
GCGGAGAGCTACTCTCCTGTTTTCAGCTGCAGGAGACTTTGAGAAGGAAC
TGGATCGCCTGTACCTGAACAGCGAGAAAATAAAGGTAGATGAAGAAATG
CTATAATTACTATCACTATGTTGCGTCTGGAGAATGGCGCCTTTGGACTT
TCTATTGGTCTGAAGGACCACAGGCGCTGACTTTCTTTACTTTCTACCTT
GAACCTTTTTTCAGTGCCCTTTTTTCCGGCGGCGCGCCTTTGAGTTCTTG
GAAGCAGCAAAGAAAACGCTGCTTTTCCTTGCCGCCCGCCACAAAAGCCT
GCCGGGAGGGCTTTTTGAGCCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig94:398879..399450+

>mRNA_H-akashiwo_Contig94.11.1 ID=mRNA_H-akashiwo_Contig94.11.1|Name=mRNA_H-akashiwo_Contig94.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=369bp|location=Sequence derived from alignment at H-akashiwo_Contig94:398879..399450+ (Heterosigma akashiwo CCMP452)
ATGTGCCCATCCTTTTCGCTTTTCCAGCTATGCCTGGTGCTCTTTTTATT
ACCTTGGGGCCTCAAAGCCTATCTTCAAGGAGTGCCATCAAAAATAGCGG
GGGTAATGCCACAGCAGCTGGTTGATTTTCAGGGTCGCAGTGTGGGTTCA
CAGCCACGAGAGGGGTATCTGGGCAGGCGGAGAGCTACTCTCCTGTTTTC
AGCTGCAGGAGACTTTGAGAAGGAACTGGATCGCCTGTACCTGAACAGCG
AGAAAATAAAGTGCCCTTTTTTCCGGCGGCGCGCCTTTGAGTTCTTGGAA
GCAGCAAAGAAAACGCTGCTTTTCCTTGCCGCCCGCCACAAAAGCCTGCC
GGGAGGGCTTTTTGAGCCA
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