mRNA_H-akashiwo_Contig94.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig94.10.1
Unique NamemRNA_H-akashiwo_Contig94.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig94.10.1 vs. uniprot
Match: A0A7S3YD48_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD48_HETAK)

HSP 1 Score: 235 bits (599), Expect = 2.250e-77
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 2 
Query:  122 MDNFGSSGNPGSNQNPFGNSNQIPGGHPSLRGASIGNIPAHLLEIPQHLIPSAGFAGDPQQLLNLQNFGGMNQDDGQLSLGDAWRFQQLMHPRNPSEQQQLLLAAAGAGGPLGGA 466
            MDNFGSSGNPGSNQNPFGNSNQIPGGHPSLRGASIGNIPAHLLEIPQHLIPSAGFAGDPQQLLNLQNFGGMNQDDGQLSLGDAWRFQQLMHPRNPSEQQQLLLAAAGAGGPLGGA
Sbjct:    1 MDNFGSSGNPGSNQNPFGNSNQIPGGHPSLRGASIGNIPAHLLEIPQHLIPSAGFAGDPQQLLNLQNFGGMNQDDGQLSLGDAWRFQQLMHPRNPSEQQQLLLAAAGAGGPLGGA 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig94.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YD48_HETAK2.250e-77100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig94contigH-akashiwo_Contig94:376398..377355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size467
Hectar predicted targeting categoryother localisation
Exons5
Cds size345
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig94.10.1prot_H-akashiwo_Contig94.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig94 376398..377234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.5328228-CDS-H-akashiwo_Contig94:376397..3764631681388050.5328228-CDS-H-akashiwo_Contig94:376397..376463Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 376398..376463 -
1681388050.5480256-CDS-H-akashiwo_Contig94:376637..3766851681388050.5480256-CDS-H-akashiwo_Contig94:376637..376685Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 376638..376685 -
1681388050.5629153-CDS-H-akashiwo_Contig94:376804..3768941681388050.5629153-CDS-H-akashiwo_Contig94:376804..376894Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 376805..376894 -
1681388050.577242-CDS-H-akashiwo_Contig94:377002..3770771681388050.577242-CDS-H-akashiwo_Contig94:377002..377077Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 377003..377077 -
1681388050.5915823-CDS-H-akashiwo_Contig94:377168..3772341681388050.5915823-CDS-H-akashiwo_Contig94:377168..377234Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig94 377169..377234 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.60398-UTR-H-akashiwo_Contig94:377234..3773551681388050.60398-UTR-H-akashiwo_Contig94:377234..377355Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig94 377235..377355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig94.10.1

>prot_H-akashiwo_Contig94.10.1 ID=prot_H-akashiwo_Contig94.10.1|Name=mRNA_H-akashiwo_Contig94.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=115bp
MDNFGSSGNPGSNQNPFGNSNQIPGGHPSLRGASIGNIPAHLLEIPQHLI
PSAGFAGDPQQLLNLQNFGGMNQDDGQLSLGDAWRFQQLMHPRNPSEQQQ
LLLAAAGAGGPLGGA
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mRNA from alignment at H-akashiwo_Contig94:376398..377355-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig94.10.1 ID=mRNA_H-akashiwo_Contig94.10.1|Name=mRNA_H-akashiwo_Contig94.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=958bp|location=Sequence derived from alignment at H-akashiwo_Contig94:376398..377355- (Heterosigma akashiwo CCMP452)
CAGCCCCCCACCCAAATACATTGCAACGGGCAGGCAGCGACAGATAAAAA
GGACTGTACCGTATTGACCTGGCTTTCTTTCTTCATTAAAGTAAGTCTTT
TAGGACTGTTTGTCCCAAAAAATGGATAACTTCGGGTCCTCAGGGAACCC
GGGGAGTAACCAGAACCCCTTCGGCAACTCGAACCAGGTGCGAATCATCC
CTTTCATTGTCCCTCAGGTTTGATCTTACACTATGCACACATGATCCCAG
TAAGTCATCAATGCGCATTTCTATGCAGATTCCTGGAGGGCACCCATCAT
TACGTGGAGCTTCGATTGGAAATATTCCAGCACACCTGCTAGAGATCCCT
CAGGTAACTCGCACAAGAATGCGACGACTAGCTTTTCTGCATCACCATGC
AAACCTATCTCGCCTGATACATTGATAACCGCTAACTTAAAACTTCTTTA
CGCTTCTTTAGCATTTGATACCCTCAGCTGGATTCGCTGGCGATCCACAA
CAACTTCTAAATTTGCAAAACTTTGGTGGAATGAATCAAGACGATGGCCA
GGTTGGTTTGATTCGAACGGGTTCTTGGATGATGTTTTCATAGAGAAATC
AATCTGTTGTATTCTGAAGAAGCTGAAAACCTTGAGTATGAACTATTTTT
GCATTCATCCCCTCTATCAGCTTTCACTTGGAGACGCTTGGAGGTTCCAG
CAGCTGATGCATCCCAGGGTAGGTGGAAAGTTAAAACTTACTATGGCAAA
TTCTCTGCTGTGAATGAGACCGGGTTGGTGTTGTTGGCGCTACAGTGTTT
TATATCACCAAAGTCGAAGTGTTAAAATCCGTCTCCAAATTATACAAGCC
CTATTTCAACGATCTTTGCTCCACACTTCTTGCGGCTATCAGAACCCAAG
CGAGCAGCAGCAGCTCCTTCTGGCCGCAGCTGGGGCAGGAGGACCACTGG
GGGGCGCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig94:376398..377355-

>mRNA_H-akashiwo_Contig94.10.1 ID=mRNA_H-akashiwo_Contig94.10.1|Name=mRNA_H-akashiwo_Contig94.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=345bp|location=Sequence derived from alignment at H-akashiwo_Contig94:376398..377355- (Heterosigma akashiwo CCMP452)
ATGGATAACTTCGGGTCCTCAGGGAACCCGGGGAGTAACCAGAACCCCTT
CGGCAACTCGAACCAGATTCCTGGAGGGCACCCATCATTACGTGGAGCTT
CGATTGGAAATATTCCAGCACACCTGCTAGAGATCCCTCAGCATTTGATA
CCCTCAGCTGGATTCGCTGGCGATCCACAACAACTTCTAAATTTGCAAAA
CTTTGGTGGAATGAATCAAGACGATGGCCAGCTTTCACTTGGAGACGCTT
GGAGGTTCCAGCAGCTGATGCATCCCAGGAACCCAAGCGAGCAGCAGCAG
CTCCTTCTGGCCGCAGCTGGGGCAGGAGGACCACTGGGGGGCGCT
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