mRNA_H-akashiwo_Contig939.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig939.3.1
Unique NamemRNA_H-akashiwo_Contig939.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig939.3.1 vs. uniprot
Match: A0A7S3UW39_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW39_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 2.490e-14
Identity = 38/47 (80.85%), Postives = 39/47 (82.98%), Query Frame = -3 
Query:   14 QRLQLGLQPALGPLAPGVVPRGQRPQEPPREGGPG-ALRASRWGRGC 151
            QRLQLGLQPALGPLAPGVVPRGQRPQEPP+E GPG ALR    G G 
Sbjct:   36 QRLQLGLQPALGPLAPGVVPRGQRPQEPPQEDGPGRALRGQPLGVGA 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig939.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UW39_HETAK2.490e-1480.85Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig939contigH-akashiwo_Contig939:197979..198929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.1893716-CDS-H-akashiwo_Contig939:197978..1980641681388050.1893716-CDS-H-akashiwo_Contig939:197978..198064Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig939 197979..198064 -
1681388050.1996896-CDS-H-akashiwo_Contig939:198862..1989291681388050.1996896-CDS-H-akashiwo_Contig939:198862..198929Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig939 198863..198929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig939.3.1prot_H-akashiwo_Contig939.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig939 197979..198929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig939.3.1

>prot_H-akashiwo_Contig939.3.1 ID=prot_H-akashiwo_Contig939.3.1|Name=mRNA_H-akashiwo_Contig939.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=51bp
LAAAGSPDPSGWRAARRGRLPAVAPAGAGHVGRRPARGVRGPAGGRAGGA
G
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mRNA from alignment at H-akashiwo_Contig939:197979..198929-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig939.3.1 ID=mRNA_H-akashiwo_Contig939.3.1|Name=mRNA_H-akashiwo_Contig939.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=951bp|location=Sequence derived from alignment at H-akashiwo_Contig939:197979..198929- (Heterosigma akashiwo CCMP452)
CTGGCGGCGGCGGGCAGCCCCGACCCCAGCGGCTGGCGCGCAGCGCGCCG
GGGCCGCCTTCCCGCGGGTGGGCGGGCTCCTCTTGCCCTCCCTTGGCTGG
GGCTGCTTTTTTTTCCTTCCTTGCTTGAAGGAGGTTGGATGGGCGGTGCC
ACTTTTTCTCGGGAATAGGTGGCTTTGAATTTAATTAAATAGATATATAT
ATATATATGGACCCAGTCGTTGCAACTGCAGGTCATTTTGTTGAGATAAG
GAAAAGGAGCGGTGATCTATAGGATGGACTTAAAATTGGACATTGGGAGT
GCAATTTTGTACATCAAGACTGATGGTAGTCGGAGGGAAGAAGCCATTGT
CAAAAACTGAGTTTGAAACAACAGTGCTTGTAATACCACGATGCAAGCTT
AAGCAGCAGAAGCAGTACAATTCTAAGGGGCTGAAACATAAGGTAGATGC
GCAGCAACGGAAGCAGCATTACGCACCATCATCGAAACCATCTTGACTCG
CAGGGTAGACATAGATGCACTCATATGGGCTGTGAGTTGTCGGAGGACGT
GCCAGGAGACGAGACAACAGAAAGATGGTGTGTGTGCCACACATAGAACT
GTGCCTGATCGTTCACGAACCTTGAAGCATTTTTTTACGAAGTGCTCAGA
TGCCAAATGGCGCGTCAGGATGGGAGAGGAGCAAACAAAAAAGTGGACTG
GCTTCTGTGGGTTGTTGGTAGAAGGCCGGGTTCAATCGTCTTTCGCGTGT
ATTATAACAGGATGCCAGTCACACCATACTGAAGCTTTTGGAGGACTCGT
GAGAAGGAAGCGGTGCCGCACAGGCCAGCAGCCCCCCTCCCCCGCCGCCG
CGGTGCCGTCCCCAGTGGCTCCTGCGGGCGCTGGCCACGTGGGACGACGC
CCGGCGCGAGGGGTCCGAGGGCCGGCTGGAGGCCGAGCTGGAGGCGCTGG
C
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Coding sequence (CDS) from alignment at H-akashiwo_Contig939:197979..198929-

>mRNA_H-akashiwo_Contig939.3.1 ID=mRNA_H-akashiwo_Contig939.3.1|Name=mRNA_H-akashiwo_Contig939.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=153bp|location=Sequence derived from alignment at H-akashiwo_Contig939:197979..198929- (Heterosigma akashiwo CCMP452)
CTGGCGGCGGCGGGCAGCCCCGACCCCAGCGGCTGGCGCGCAGCGCGCCG
GGGCCGCCTTCCCGCGGTGGCTCCTGCGGGCGCTGGCCACGTGGGACGAC
GCCCGGCGCGAGGGGTCCGAGGGCCGGCTGGAGGCCGAGCTGGAGGCGCT
GGC
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