mRNA_H-akashiwo_Contig939.17.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig939.17.1
Unique NamemRNA_H-akashiwo_Contig939.17.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig939.17.1 vs. uniprot
Match: A0A7S3XS44_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS44_HETAK)

HSP 1 Score: 122 bits (305), Expect = 7.480e-33
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 1
Query:    1 ACAAAGLVGDCCPAPGGADLACCAETQGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GGKADSNCAAHGACTALGLTGACCPSEDGVLLECCGST 327
            ACAAAGLVGDCCPAPGGADLACCAETQGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GGKADSNCAAHGACTALGLTGACCPSEDGVLLECCGST
Sbjct:    1 ACAAAGLVGDCCPAPGGADLACCAETQGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKADSNCAAHGACTALGLTGACCPSEDGVLLECCGST 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig939.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XS44_HETAK7.480e-3398.20Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig939contigH-akashiwo_Contig939:390611..391117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size507
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.3216941-CDS-H-akashiwo_Contig939:390610..3909401681388050.3216941-CDS-H-akashiwo_Contig939:390610..390940Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig939 390611..390940 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.3321326-UTR-H-akashiwo_Contig939:390940..3911171681388050.3321326-UTR-H-akashiwo_Contig939:390940..391117Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig939 390941..391117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig939.17.1prot_H-akashiwo_Contig939.17.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig939 390611..390940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig939.17.1

>prot_H-akashiwo_Contig939.17.1 ID=prot_H-akashiwo_Contig939.17.1|Name=mRNA_H-akashiwo_Contig939.17.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=110bp
ACAAAGLVGDCCPAPGGADLACCAETQGQGGSGQQGGGGGVGGGAPAAPA
PRPAPSPTPPSSSASSSDNDNGGKADSNCAAHGACTALGLTGACCPSEDG
VLLECCGST*
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mRNA from alignment at H-akashiwo_Contig939:390611..391117+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig939.17.1 ID=mRNA_H-akashiwo_Contig939.17.1|Name=mRNA_H-akashiwo_Contig939.17.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=507bp|location=Sequence derived from alignment at H-akashiwo_Contig939:390611..391117+ (Heterosigma akashiwo CCMP452)
GCCTGCGCCGCCGCAGGCCTGGTGGGCGACTGCTGCCCCGCCCCGGGGGG CGCCGACCTTGCCTGCTGCGCAGAGACGCAGGGCCAGGGTGGCAGCGGGC AGCAGGGGGGCGGCGGTGGTGTGGGGGGCGGGGCGCCCGCCGCGCCTGCC CCCCGCCCGGCACCTTCTCCCACCCCGCCTTCTTCCTCGGCTTCCTCCTC GGATAATGATAATGGGGGCAAAGCAGACAGCAACTGTGCTGCGCATGGAG CATGCACGGCACTGGGCCTCACGGGAGCCTGCTGTCCAAGTGAGGATGGG GTCTTGCTAGAGTGCTGTGGTTCAACTTGATAGATCTATTAGAAGATATG ATTATCACCCCACCCTTTTGCTGGTTGCTTTAATGCATTCCAATATATAT ATTTGTAGAAAACAAATGTAAAAATACAGACAAACGACAATGTGTTGCAT CAATCAATTGGCCAATAATAATTGGCCTCATCATTAACAACGtAGGTAAA TATGTGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig939:390611..391117+

>mRNA_H-akashiwo_Contig939.17.1 ID=mRNA_H-akashiwo_Contig939.17.1|Name=mRNA_H-akashiwo_Contig939.17.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=330bp|location=Sequence derived from alignment at H-akashiwo_Contig939:390611..391117+ (Heterosigma akashiwo CCMP452)
GCCTGCGCCGCCGCAGGCCTGGTGGGCGACTGCTGCCCCGCCCCGGGGGG
CGCCGACCTTGCCTGCTGCGCAGAGACGCAGGGCCAGGGTGGCAGCGGGC
AGCAGGGGGGCGGCGGTGGTGTGGGGGGCGGGGCGCCCGCCGCGCCTGCC
CCCCGCCCGGCACCTTCTCCCACCCCGCCTTCTTCCTCGGCTTCCTCCTC
GGATAATGATAATGGGGGCAAAGCAGACAGCAACTGTGCTGCGCATGGAG
CATGCACGGCACTGGGCCTCACGGGAGCCTGCTGTCCAAGTGAGGATGGG
GTCTTGCTAGAGTGCTGTGGTTCAACTTGA
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