mRNA_H-akashiwo_Contig939.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig939.16.1
Unique NamemRNA_H-akashiwo_Contig939.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig939.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig939contigH-akashiwo_Contig939:386376..390602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size200
Hectar predicted targeting categoryother localisation
Exons2
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.2822561-CDS-H-akashiwo_Contig939:386375..3864411681388050.2822561-CDS-H-akashiwo_Contig939:386375..386441Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig939 386376..386441 +
1681388050.2935731-CDS-H-akashiwo_Contig939:390469..3906011681388050.2935731-CDS-H-akashiwo_Contig939:390469..390601Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig939 390470..390601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig939.16.1prot_H-akashiwo_Contig939.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig939 386376..390601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig939.16.1

>prot_H-akashiwo_Contig939.16.1 ID=prot_H-akashiwo_Contig939.16.1|Name=mRNA_H-akashiwo_Contig939.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=66bp
GLQGDCCPTQEGVYLGCCSILEANSTTATVAPTAQAGPPGGGSGESSSTP
SSGGSNSGSSGSEQCS
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mRNA from alignment at H-akashiwo_Contig939:386376..390602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig939.16.1 ID=mRNA_H-akashiwo_Contig939.16.1|Name=mRNA_H-akashiwo_Contig939.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4227bp|location=Sequence derived from alignment at H-akashiwo_Contig939:386376..390602+ (Heterosigma akashiwo CCMP452)
GGCTTGCAAGGCGATTGTTGCCCAACTCAGGAGGGGGTGTATCTTGGATG
TTGCTCCATCCTTGAGGTATGACCATTTTTTCATATGCCATTGTTTAGAT
GTCTGTGCACCTTGAATGCCACGCGCTGTGCATTCTACCTCTTATAAAAG
GCATTTTCCCATCTTTCTGTCTTTGTTATGACAACATGAAGTGAAAGTTA
AAGCCCAGAACTTATCCACTGCTGGTCCACCCATCTTGATCTATTTTTGA
AGCTGCTTCTCGGAGTTAAAATGAATTCTTCTACTTGATGTTGTTGAGCT
ATACATCATGGTTGAAATTATTGTTCCATATTATTGTTTTATGCTCAAGT
AATCTGATCCGCTTGCTGGGCTTCACGCGTCTCTGGCAACCTTTTTTATG
TTAGAAGGGATGTGTGAAGTCTAGTAGCTCAATTTTGCACACAAACATCG
ATGATGAGATAGGGTATGAAAGTAACTGTGTCGGCACAGCTGAACCCGCC
CAGGGTTGCACCACAACTAAGTGCTCACAGTACCACCCGCCCTAACACAA
ATAGCAGAGTTGGTTGGTCTGGGAGCCCATGAAAGAGATGATGAGAAGAG
GGATAAGAGAGAATGAAAAAAGTATGGAATGGATGACCCCCAGCTACAGG
TAGAGGATGCAGTTGCTAAAGTGCACCAGCAGAGCAGGGCATTGGTCTCG
ATCTCCTGCCCACAAGAGCAAGCCCTTGGGCTCTATGTCCTGATCTCACC
ACCTCCAGACACTTAACTCCGTATCACACGTTGGTGTTAGAAATGGGTAT
ATTGTAACTATTGCTACTTCTCCTTATTGTCATCTTCTGTGGGGTAAAGT
TGTCTTTAATAAGAGGAAGGTATCCTTTTATGGGCTGGTGTTGAGGAGCA
GCAGGATGCTAAAGACCGCCCCATGTGCATGGGTTTCCATAGCCCTGTGG
CATCTTTTGAAAGTAGCCAGGGAGATAGGCTGAAGTTGTAGCACTACTGG
TTTGAGCTGATGGAGGTGCAGTGGGTGTGCAAACGCAAAGTTGAACTGAT
CTCCAAGAAGGTCTGGGGCAGATGGGTCATCAAGCATGCCATTTTAAATC
ATTACATTGATAAATATGTACATACTAGTTATACAATAACTTTTTGTTTG
ATGGAGACCAAAAAACCAGTTGGAGAAGCTCCACACAGATTTTATATTTT
CAGGGTGACAATTGCAACTGATGCTGATGGCCAGTCTGCCCCGCGGCACT
TCACACCATGCCTCAACTGCTGCTTCCGATTTCACTTGTTTCTCCGTATT
TATTTATAGTTTCTGAAAAAAAACCAATAGCAACAAGTAAAACAACATAC
TGCAAATGAAAATAAATTGAAATACTGCCAATTGGTCAATACAACTTCAT
GAAACTGTTTTTCCCAATCTGAATTCACTGACACTGAAAGAACACTGTGA
GTCAAATGAAAAGTATCACCAGCTGTTGTTGTTGCTAGGCCCCAAGATAT
AAACTAACATTTTCAACATGATGCATATAAATACAAGAGGCAGGAGTGAT
CAGACAAAATCTATATCGGTAAACTCAAATTTTATTCTCGAGACAAAAAA
ACAAAGACTTTGAAACACAAAGTGTCCAAAGCTACAAAGAAGGGTGCAAA
AGACCAGCAGTGGCCTCTAAGAGTCTGCCTTCTGAGTGCTCCCCCCAGCT
TTGACACAGAGTAGCTCCCCCTATGCAGCATCACTGTCGCTGCCTATACC
CTGTACGAAATCACGGGCGCCGGAAATGCCTGCAGGCTCCTCATCAGGGA
AGCGGCAGTGCAGCTCCTCAAGGCTGAACGCTGCCCTTTCATCAGGGCCG
GCAAAATGAGCGCCATAGATGGTCGAAAGCTCAGGAGTAGCGGGTGCGGC
AGTAGGTGCCATGAAGGGTGCACCAGTTGCCAGAAGCCCACTAGTGCTTC
CCCTGTGCTCTAGCGCCTGTACAACAGCATCCAGAGTCTTCTGATGGGCC
TGCTAGTTCTGAACCAAATTGGCCAGCAATTGGCCGTTTGACAAGGTGGT
GGCAGCTGGATGTGAGGTAATTGCAGTACTATTGACTTTGAAGGTGGTCT
CCTCAGTGTTGTCCTTCAGCTCAGTGTGCCGCTTCTATGTAGAGCAAGTC
CAAAGCAATATTCAAAGTCATCCTTGCCAGGATGTGAGGAAATAACTGTG
CATTGTGTTTTGTGTCGTCTAGTAGTTGGTTAGCAGTTGGTTAGTCCTAG
TGCAGACAGCATTGTACGGATGATCAGGCGCGCGTCAACCTTCAATTGAA
GCCAGTAGGATTGAGATAATTTCTGCGTCCTTTAGCATCCCGTGGCCGGT
CTTCTCGGTATTGTTGCACTGCCCAGTCAAACGAGTTGTGTAGGCCAGAA
ATTTCTTGCCAACACGTTACTTCAGCTTGGATCCTGAGTCGACCTGGCTT
GCTGAGAAATGAGCCGCTGCTCGCACTTGTCCCACATCTGGTATGGTAAA
AGTCTGTTTATCAGTCTCAGCGCCGTAGTTTTTCGTCATCAAAGGCCTTG
GTGTAGTCAGATCCCATAGCAAGTTCCAACGCTGTCGGTAGAGCTGCCCT
GTTCCTGTCCATCATCAGTTGATAGTCAACTCTTGGGTAATGTTCCAGCC
AGTCCTCCATGTTGAGCACAAGTGAGATAGTTTCGTTTTTCTCCTTGACC
GCACCGTCTGCGCGAGTTGTCTATTGCTTCACAGTGTCCGTGATTCTATG
GATATAGGGGAGGTAGACTGCACCAGGTGAGAGGTCTTCCTGTCCATAAA
GAAGTGGCCATCTTGTCTGGGTTCTGCTGTTGCTTCACAAGCAAACCGGT
GGAACTCATAGAGCCTTTGTGTTTTGTTGTTCTGCTTGACTGAATTAAGT
TCTTAACGGAAGGCATACATTCAGTCCTAGTTCAAGCACTCCCACCATCA
TCACCAAAACAGAAAGTGCTTGAATGTGTGCCTTCCGTTACGACCTTTTT
TTGTTTATTTAATCAAGTAGAAAAAACACAATATACTGGATGATGGTCTT
ATCAGAGACAAACCCAAAGTCAAAATCATAGAACCTTTGTTGTCGTATTA
GCCTTCATCTTTTTTGGAGCCCTAGGCCCGTCACTTGAAAACTTAGTCAA
CAAAATTCAAAGACTAGGAAGTTTTGTTACAAAGTTGCCTGTGTTGATCA
GGTGGTGATGAGCGTGTCACCTGTACAGACATCGTTAAACTTTGCAAGCA
AAAGAGCTGGTACTGTATTGGCAAAACAATACTTTTCACGCAGAACAAAT
GCAGTGGGCCCATCGCGTTCGGTGGTAACCAAAAAAAGAACCACTGTTAA
TCTTACATATGTATTATAATAGATAAATAGATGTACAATAACACACTGCT
TCAGCTGTTTTTCTCTCTTACAGTACATCAAGCCGGTTTTGCCCAACCAA
TTTATATGTAGTACGCTCAGGGAACATGTCGACAAGAGGGGTGGCAAAGA
GTGGGTACTGGAGTTAGCCTGTGAGAGATGTGGCATTGCTCAGCATCCTA
CTGGGACGGTCAAGGAGTGCCCAATAGGGGGGTGCCACGTCTGCTGTCAG
GGAAGATTTGAGAGGGGCTGCAACCCGGTGGATGGGAAGGCCTTCTTCAT
GGCCTTGTATGATAAGTTGGTCGAGCACGACAATCCTTTTCAGATGATAG
ATCCGTGGAATGACTGGTTAGACCAGCTGGAGTTTGGAGTTTAGTAGTCA
GGCAGCAGTAGAAGTATTGATGTAACAGAGGTTACCAGACAAGTGGCAAG
ATGGAATGGGGTTTGATACTTGTTCTTGTGGTCTTAGCGTGACTTGAGTA
GTTGTATTGTGAAATGGCAAAAAGAAGTGGAAGGGTCTGCTTATAGAAGC
TATGGGGCTCTGCCCCCAAAGTGATTTGAAAGGTTAGACTTGAAACTAAA
TATAACATCATCATCATCATGTAGTAACAGTATGTAGTAGCACAGCGCAG
CAACTGACATGGATAAAGAAAATTCAAAAGTTTGCCCATTCTTTATTCTA
CTTTTTGGCTTCCCTCTTTTGCTGGTCTGGGTCTGGGGCCGCAGGCAAAC
TCCACCACAGCCACAGTGGCCCCCACCGCGCAAGCTGGGCCACCAGGAGG
AGGAAGCGGCGAGTCCTCTTCCACCCCCTCCTCCGGCGGCAGCAACAGTG
GCAGCAGCGGCAGCGAGCAGTGCAGCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig939:386376..390602+

>mRNA_H-akashiwo_Contig939.16.1 ID=mRNA_H-akashiwo_Contig939.16.1|Name=mRNA_H-akashiwo_Contig939.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=198bp|location=Sequence derived from alignment at H-akashiwo_Contig939:386376..390602+ (Heterosigma akashiwo CCMP452)
GGCTTGCAAGGCGATTGTTGCCCAACTCAGGAGGGGGTGTATCTTGGATG
TTGCTCCATCCTTGAGGCAAACTCCACCACAGCCACAGTGGCCCCCACCG
CGCAAGCTGGGCCACCAGGAGGAGGAAGCGGCGAGTCCTCTTCCACCCCC
TCCTCCGGCGGCAGCAACAGTGGCAGCAGCGGCAGCGAGCAGTGCAGC
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