mRNA_H-akashiwo_Contig939.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig939.13.1
Unique NamemRNA_H-akashiwo_Contig939.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig939.13.1 vs. uniprot
Match: A0A7S3XS23_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS23_HETAK)

HSP 1 Score: 143 bits (360), Expect = 1.580e-42
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 2 
Query:    2 TLLPAARHKDFWAFHSWADGLFAQGDGKNEESSTEAINAYYGVALWGQATNNTALADWGRLLLTMEL 202
            TLLPAARHKDFWAFHSWA+GLFAQGDGKNEESSTEAINAYYGVALWGQATNNTALADWGRLLLTMEL
Sbjct:   48 TLLPAARHKDFWAFHSWANGLFAQGDGKNEESSTEAINAYYGVALWGQATNNTALADWGRLLLTMEL 114
[Close]
BLAST of mRNA_H-akashiwo_Contig939.13.1 vs. uniprot
Match: A0A7S4D6P7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6P7_HETAK)

HSP 1 Score: 110 bits (274), Expect = 8.450e-27
Identity = 49/66 (74.24%), Postives = 55/66 (83.33%), Query Frame = 2 
Query:    5 LLPAARHKDFWAFHSWADGLFAQGDGKNEESSTEAINAYYGVALWGQATNNTALADWGRLLLTMEL 202
            + P ARHKDFWAFHSWA GLF+   GKNEESSTEAIN YYGV L+G+AT N AL DWG+LLLTME+
Sbjct:  207 IFPQARHKDFWAFHSWASGLFSSPVGKNEESSTEAINGYYGVMLYGEATGNKALHDWGKLLLTMEI 272
[Close]
BLAST of mRNA_H-akashiwo_Contig939.13.1 vs. uniprot
Match: A0A835YW37_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW37_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 6.390e-21
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 2 
Query:   11 PAARHKDFWAFHSWADGLFAQGDGKNEESSTEAINAYYGVALWGQATNNTALADWGRLLLTMEL 202
            P ARHKDF+  HSWA GLF+QG+GK++ESS+EA+NAYY V L G AT N  L DWGR+LL  EL
Sbjct:  118 PTARHKDFFDGHSWASGLFSQGNGKSQESSSEAVNAYYAVYLLGMATGNRELRDWGRILLAGEL 181
[Close]
BLAST of mRNA_H-akashiwo_Contig939.13.1 vs. uniprot
Match: A0A7S3XS68_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS68_HETAK)

HSP 1 Score: 93.2 bits (230), Expect = 8.150e-21
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 2 
Query:    5 LLPAARHKDFWAFHSWADGLFAQGDGKNEESSTEAINAYYGVALWGQATNNTALADWGRLLLTMEL 202
            L P ARHKDF+  HSWA GLF   DGK++ESS+EA+NAYYGV L+G AT +   ADWG++LL+MEL
Sbjct:  207 LFPVARHKDFYDHHSWALGLFTTWDGKSQESSSEAVNAYYGVYLFGLATGDQKFADWGQILLSMEL 272
[Close]
BLAST of mRNA_H-akashiwo_Contig939.13.1 vs. uniprot
Match: A0A835ZFG2_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFG2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.270e-20
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 2 
Query:    5 LLPAARHKDFWAFHSWADGLFAQGDGKNEESSTEAINAYYGVALWGQATNNTALADWGRLLLTMEL 202
            L P ARHKD + FHSWA GLF Q +GK++ES +EAINAYY V L+G AT N AL DWGR+L  MEL
Sbjct:  272 LFPFARHKDMYDFHSWASGLFPQSNGKSQESISEAINAYYAVHLYGVATKNDALRDWGRVLAQMEL 337
[Close]
BLAST of mRNA_H-akashiwo_Contig939.13.1 vs. uniprot
Match: A0A7S2CXP4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CXP4_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 4.920e-18
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 2 
Query:    5 LLPAARHKDFWAFHSWADGLFAQGDGKNEESSTEAINAYYGVALWGQATNNTALADWGRLLLTMEL 202
            L PA RHKDF+  HSWA GLF    G+N+ESS+E++NAYYG AL G+A  +  L D+GRLLL  E+
Sbjct:   45 LYPAHRHKDFFVGHSWASGLFPSVSGRNQESSSESVNAYYGAALLGEALGDDRLRDFGRLLLATEI 110
[Close]
BLAST of mRNA_H-akashiwo_Contig939.13.1 vs. uniprot
Match: A0A7R9UB85_9STRA (Endo-1,3(4)-beta-glucanase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB85_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.000e-18
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 2 
Query:    5 LLPAARHKDFWAFHSWADGLFAQGDGKNEESSTEAINAYYGVALWGQATNNTALADWGRLLLTMEL 202
            L P AR KD++  HSWA GLF QG+GK++ESS+EA+NAYY V+L+G AT N  L  WG  LL+ E+
Sbjct:  597 LFPTARQKDWFDGHSWASGLFPQGNGKSQESSSEAVNAYYAVSLYGLATGNAELQKWGSFLLSSEI 662
[Close]
BLAST of mRNA_H-akashiwo_Contig939.13.1 vs. uniprot
Match: W7TQI2_9STRA (Endo-1,3(4)-beta-glucanase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQI2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.310e-17
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 2 
Query:   11 PAARHKDFWAFHSWADGLFAQGDGKNEESSTEAINAYYGVALWGQATNNTALADWGRLLLTMEL 202
            P ARHKDF+  HSWA GLF Q +GK++ESS+EAINAYYG  L+G+AT +  L ++ +LLL ME+
Sbjct:  624 PLARHKDFFDGHSWASGLFEQNNGKSQESSSEAINAYYGAHLYGRATGDVKLENFAKLLLAMEI 687
[Close]
BLAST of mRNA_H-akashiwo_Contig939.13.1 vs. uniprot
Match: A0A8J6CFR8_DIALT (Endo-1,3(4)-beta-glucanase n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFR8_DIALT)

HSP 1 Score: 83.2 bits (204), Expect = 4.560e-17
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 2 
Query:    5 LLPAARHKDFWAFHSWADGLFAQGDGKNEESSTEAINAYYGVALWGQATNNTALADWGRLLLTMEL 202
            L P AR KD +  HSWA GLF   DGK++ESS+EA+NAYYG AL G+A  + AL  W +LLL ME+
Sbjct:  697 LFPVARCKDLYDGHSWASGLFQMADGKSQESSSEAVNAYYGAALVGEALGDEALRSWAQLLLAMEI 762
[Close]
BLAST of mRNA_H-akashiwo_Contig939.13.1 vs. uniprot
Match: A0A6S8U7P2_9STRA (Endo-1,3(4)-beta-glucanase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8U7P2_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.160e-16
Identity = 38/64 (59.38%), Postives = 45/64 (70.31%), Query Frame = 2 
Query:   11 PAARHKDFWAFHSWADGLFAQGDGKNEESSTEAINAYYGVALWGQATNNTALADWGRLLLTMEL 202
            P ARHKDF+A HSWA G+F  G GK +ESS+EA NAYYG  L   +  + ALADW R LL ME+
Sbjct:  608 PRARHKDFYAGHSWASGIFFMGQGKAQESSSEAANAYYGAYLLALSLGDVALADWCRTLLAMEV 671
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig939.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XS23_HETAK1.580e-4298.51Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4D6P7_HETAK8.450e-2774.24Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YW37_9STRA6.390e-2165.63Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus... [more]
A0A7S3XS68_HETAK8.150e-2163.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZFG2_9STRA1.270e-2065.15Endo-1,3(4)-beta-glucanase n=1 Tax=Tribonema minus... [more]
A0A7S2CXP4_9EUKA4.920e-1857.58Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7R9UB85_9STRA7.000e-1857.58Endo-1,3(4)-beta-glucanase (Fragment) n=1 Tax=Ping... [more]
W7TQI2_9STRA1.310e-1759.38Endo-1,3(4)-beta-glucanase n=2 Tax=Monodopsidaceae... [more]
A0A8J6CFR8_DIALT4.560e-1757.58Endo-1,3(4)-beta-glucanase n=3 Tax=Diacronema luth... [more]
A0A6S8U7P2_9STRA1.160e-1659.38Endo-1,3(4)-beta-glucanase n=1 Tax=Pelagomonas cal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig939contigH-akashiwo_Contig939:345359..346712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388050.229006-CDS-H-akashiwo_Contig939:345358..3454431681388050.229006-CDS-H-akashiwo_Contig939:345358..345443Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig939 345359..345443 +
1681388050.2402563-CDS-H-akashiwo_Contig939:346593..3467121681388050.2402563-CDS-H-akashiwo_Contig939:346593..346712Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig939 346594..346712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig939.13.1prot_H-akashiwo_Contig939.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig939 345359..346712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig939.13.1

>prot_H-akashiwo_Contig939.13.1 ID=prot_H-akashiwo_Contig939.13.1|Name=mRNA_H-akashiwo_Contig939.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=68bp
HAATGGPPQGLLGVPLLGGWPLCSGRRQERGEQHGGDQRLLRRGALGAGH
QQHGAGGLGPPAADHGAA
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mRNA from alignment at H-akashiwo_Contig939:345359..346712+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig939.13.1 ID=mRNA_H-akashiwo_Contig939.13.1|Name=mRNA_H-akashiwo_Contig939.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1354bp|location=Sequence derived from alignment at H-akashiwo_Contig939:345359..346712+ (Heterosigma akashiwo CCMP452)
CACGCTGCTACCGGCGGCCCGCCACAAGGACTTCTGGGCGTTCCACTCCT
GGGCGGATGGCCTCTTTGCTCAGGGCGACGGCAAGGTGCGTGTGTGTGTG
CGGGAGAGGAGAGGAGGGAAGGGTTGTGGGTTCGCGGCTTTTCTTCTGTT
CTCTTTTTAGGTAGTATGGGGAGAAAAAGTAATAATGCACTTTATAATAT
GTACTCACTTGAAAGTAATGTATGTGTAGCAGTAGGAACTCATTTGGTGT
TTGATTTCAATTCAGAGCTCAAAGGAAGACTTTTGCTGCTCAGACCATAG
TTTCTATGAAATACATCTTTCTTCTAACTCTGGTTGCCACATGATGCTGG
AAGAAGACTTCTTCTTGTAAGTATTTTAATGAAGCACAATTCTTTTCTTC
TTCTCGGCCCTAGCTGTCACCCTTTTGTGCTATACTTCAGGTTCGAAATA
TTGTGAATGCCAGGTGAAGATGCCATTCTACTGAGTGCAGAAGATCAAGG
TTGCTGCTATTGCTCTTCTTCTCCTATATATATATTTGTTCTTTTTCTCT
CTCTTTTTATTTTTTGTTTACCACGACTGCTGCTTTTTGGCACAACAGTT
GGAAGAAGAAGCCCCCCTTTAATGAAAGTAGCCGTCATTACCACTTCAAT
CCCTCTTATGTATTCCTCTTTCAAACATCACTTTACAATGAAGGCTCTGC
TCTCGAAATAGCATAGTGCACACATCCAACTAAACTATGTCCTCACCAAC
TAGCTAGTCTAACACCCGCCGCTAAAAAAAGTGAAGGAGGGAGCGTTGTT
GTTCAGTTTGGTCTCCTCCGGTACCTGATGAGCAGATATGAAACGATCGG
TCTGctGTTTTTTTTTTTTCTGTCTACGTTTGGATGATTAGCTTCCTATA
GGCACAGAAGCATACAGTTGTGTTTGTTGTTACTCTTTAAACAGCTTCTT
TTTTGCATTTATAAAAAGGCACATGCATAAATATTTGAAGTTGACCAGCA
TGGCAGTGAATTTCCGACAATAAACATCTCATTTTGGGGCAAAAAAAAAA
TGGAGTAGTCTTCTACAGACATGCAGTGTGAGGAAAAGTCACCAACAGGT
GGTTTGTTACAAATGGATAGAGGGCAAAAGAAAACCTGCTGAGCGTATAC
ATACTACGCCCAGGCGCACCCAAGCACCCTAACCAACAATACGACAACAA
CAACAACAACCCCTCCCCCCCCCCCCAACTTCCAGAACGAGGAGAGCAGC
ACGGAGGCGATCAACGCCTACTACGGCGTGGCGCTCTGGGGGCAGGCCAC
CAACAACACGGCGCTGGCGGACTGGGGCCGCCTGCTGCTGACCATGGAGC
TGCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig939:345359..346712+

>mRNA_H-akashiwo_Contig939.13.1 ID=mRNA_H-akashiwo_Contig939.13.1|Name=mRNA_H-akashiwo_Contig939.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=204bp|location=Sequence derived from alignment at H-akashiwo_Contig939:345359..346712+ (Heterosigma akashiwo CCMP452)
CACGCTGCTACCGGCGGCCCGCCACAAGGACTTCTGGGCGTTCCACTCCT
GGGCGGATGGCCTCTTTGCTCAGGGCGACGGCAAGAACGAGGAGAGCAGC
ACGGAGGCGATCAACGCCTACTACGGCGTGGCGCTCTGGGGGCAGGCCAC
CAACAACACGGCGCTGGCGGACTGGGGCCGCCTGCTGCTGACCATGGAGC
TGCG
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