mRNA_H-akashiwo_Contig937.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig937.1.1
Unique NamemRNA_H-akashiwo_Contig937.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig937.1.1 vs. uniprot
Match: A0A7S3UW36_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW36_HETAK)

HSP 1 Score: 217 bits (552), Expect = 1.250e-64
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = 1 
Query:    1 DLLQPWGFDAALACGAAYAFPASDWDFYAGLEDTVQYGIFIAMAFCVFFIFLDIIIGVNPRLNALYYKLLEDHILVTHHAEVQAARAMEGLPTSTMGYELAASLLPDPC 327
            DLLQPWGFDAALACGAAYAFPA+DWDFYAGLEDTVQYGIFIAMAFCVFFIFLDIIIGVNPRLNALYY LLEDHILVTH AEVQAARAMEGLPTSTMGYELAASLLPDPC
Sbjct:  202 DLLQPWGFDAALACGAAYAFPANDWDFYAGLEDTVQYGIFIAMAFCVFFIFLDIIIGVNPRLNALYYTLLEDHILVTHRAEVQAARAMEGLPTSTMGYELAASLLPDPC 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig937.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UW36_HETAK1.250e-6497.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig937contigH-akashiwo_Contig937:49892..53313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size330
Hectar predicted targeting categoryother localisation
Exons4
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388049.7674007-CDS-H-akashiwo_Contig937:49892..499691681388049.7674007-CDS-H-akashiwo_Contig937:49892..49969Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig937 49893..49969 -
1681388049.7770908-CDS-H-akashiwo_Contig937:50579..506571681388049.7770908-CDS-H-akashiwo_Contig937:50579..50657Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig937 50580..50657 -
1681388049.786866-CDS-H-akashiwo_Contig937:52170..522341681388049.786866-CDS-H-akashiwo_Contig937:52170..52234Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig937 52171..52234 -
1681388049.797503-CDS-H-akashiwo_Contig937:53205..533131681388049.797503-CDS-H-akashiwo_Contig937:53205..53313Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig937 53206..53313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig937.1.1prot_H-akashiwo_Contig937.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig937 49893..53313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig937.1.1

>prot_H-akashiwo_Contig937.1.1 ID=prot_H-akashiwo_Contig937.1.1|Name=mRNA_H-akashiwo_Contig937.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=109bp
DLLQPWGFDAALACGAAYAFPASDWDFYAGLEDTVQYGIFIAMAFCVFFI
FLDIIIGVNPRLNALYYKLLEDHILVTHHAEVQAARAMEGLPTSTMGYEL
AASLLPDPC
back to top

mRNA from alignment at H-akashiwo_Contig937:49892..53313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig937.1.1 ID=mRNA_H-akashiwo_Contig937.1.1|Name=mRNA_H-akashiwo_Contig937.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3422bp|location=Sequence derived from alignment at H-akashiwo_Contig937:49892..53313- (Heterosigma akashiwo CCMP452)
GACCTGCTGCAGCCCTGGGGCTTCGACGCGGCGCTGGCGTGCGGCGCGGC
CTACGCGTTCCCCGCCAGCGACTGGGACTTCTACGCCGGCCTCGAGGACA
CCGTGCAGGTGATATAGATGGGCCCTGCTGTATTCCTTAGGCTACCTCAT
ATCTACCTGATCTGCAACAAAGTGGGCAAGTTTTTAACGACACAATTGAG
CGACTGTTCCGCAAATGTTACCCTATCTTATTGTCCCCTTTTACCTCTTC
AATTGTCCGATTTTGAGCAACCTTCAAGTGTCCGATTTTTCAATCAGGAG
CCTTCATAAATGTCCTCCGCAAGTGTCCGATCGATTTTCAAAGGTCTGCG
TAAATGTCCGATTTGGTCGCGTAAGTGTCCGTCGCTCAAGTCTCTGTCTC
TATTTAGGGAGAAACTTGCCCACTTTGTTGCAGAAAAGGTAGAAGTTTAG
GTGCCTTAACAAATTAAAACCAGTTGTGCACCGTGACGGGTGCTGTGCGG
CCGGAGGGGGGGCGGGGGCACCGAAAACGCCTCCGCTGCCGCTGCCCGCG
CCGCGCCATCGGAAGTGCTGGCTCTGAGTTGCCGCCGCTGACAGCCTTCC
GCATGGCCATCGCGGTTGTATGGTAGGGCTCGGCAAGCAGATAGAATTGG
AGGAGGGTCTGCAGATGAAGTTATAAAGGATTTGGCTGCCTTATGGTGGC
TGCCTGTGGCCTGTTTCCCCAAGAAGTGTTTTGAATGGCAAGAATGCTGG
ATCATGAACTGAACATTGAACATCAAAAACCATTCAATAATCCCTGAGCC
TTTGGGTTTCCTCCTTGTGGGGTTGCTTTTTGATACCATGATAGATTGTG
GTGAAGGATGGTGGGACAATGTAGTTCCTATTTCCAATGTTGTTCCAGAT
TCCAGCGACCATTTCACGCTGTGGTGTACTTCCATACCTATATGTATATT
TCTTTTGATGATGCTTACAGCCTGCTGATTGATGCAAATGAGCACCTGTC
TACGTTTTCATACACGTGATTTTGCTGACTCAATCAGTGTTTACTTTACC
ATTTCTTTTTTACATGTTCTACCAACCAGTATGGAATCTTCATTGCCATG
GCTTTCTGCGTCTTCTTTATTTTTCTGGACATCATCATTGGAGGTAAGCA
TGCTACATTCTGTTACAATGCCTTGTTACATGCATAATTATTATATTTGT
TGTATGGTGTTACTACACACTACTTTGGTGATGATGATTTTAATTTATTT
AAGGTCCAGCCCCTCGGATAACTACAACAAGGGCTGGAGCTTGGGCCTCC
ACAAGCAGACCCTTCCACTTCTAGATCCAACTTCTCATGGTGCATCACCA
AAACTTAAGATGCTGTAGCCTTCACTGTCTTCCTACTGCAAACCTTCCCA
TTGCCAGTCTTCCCTCACCCCCTACTCCCTACCCCCCATATACTCAGCCC
ACTGCAGAAATGACAGCCCTCCAGCACACCCCCTCTGGCTGGGGCGCACG
AAACCAGCTCAGAGCCCCAGCTGGCGTTTCCATCCTACCCACACACTTAC
AGCACGCCACCTCCAGGCAGGCGCTTGGCCCATCAAAAACTGGCCTGAGT
GTGGCCTCCAGGGGGGGCGCCATACAGTCGCAGCCACTCTCCCTCCAGCC
CCCCCATTTCCATCAATCGCTCTCCAAGGGCCCCGCTGCCCCCCTCCCCC
CCCCAGCCAATTCACACAATCCTCCTTCCGATACTGATGATAAAATGATG
ATGATGCATACTGTAAGGACAATGCTGAAATATACATCCATGGCAAAAAG
CAAAAGAAGAAGGAAGAACGGCTCCATATATATAAGATTTATACCTTCTC
TCTTTTCTGTGCCCATTTCATGCGTTGCTTCATTTTTGGTGTGGCCCAAC
CCCAACATGTTCTGATGGTGAAGCTGTTTTCTGGATTCATTTGCCGTGTG
AATTCTTTGCGATATGGTGAAATATTCTGTTTTATTGTGATAAGTGCCTT
ATTTGAATGCTGAGGTGCTGTGCAGAGAGGCTTGCTATGGGAAGAGGCTG
AAGAAGGAGGCCATAAACCGTGGAGAACACTTGCAATATATTCAGAAGGG
CAGAGATTTTAAACCCCACCATTTTGGCTCCTTCTGCTACGGCAGTGTTC
ATAGACGGAGGGGATCCCGTTCCGGGGACAGATACTTTGTGGTGTTGGTT
TTGTTTTTCCTGAGATCGCGTTGATGATCTGCGATGGCGCCATTCCTTTT
TCTTGTTGGTTTCCCTGCAAGATGATGGTTGCTTGCTACTAGTAGTTCGT
GGTTGGTTATTTCTGTTGCTGAGTTTTCATTTGTTGGCATTTTGTGTCTT
CACACTTATTTATATGTTTCCTTCACCCATTCTTATTTTTCTTTTTTTGC
TGGGGGAGATGGTTTGATGTTTTTGCTTTTTGGCAGTTCATACTTTTCCT
TTCTTTCAGAGTGTGAGTTTTTGTTCTAATTTCGGACAGCTTTGAGATAG
CTTCATGACAATGAATGTTCTTTTTTTGTTTTACTCACTGATTCGTCAAC
ATGACTTTGTCATGCCTAAAACCAATCTGTGTCATTGATTATGCTGAGAA
GCTTGTTGAACTCTGCTCTTTTTATTTTTATCATGCTGTCGTTCACCCTT
TTGAAGTGAATCCAAGACTCAATGCTTTGTACTACAAGCTCCTGGAGGAT
CACATTCTGGTTACTCACCATGCTGAAGTCCAAGGTATAATGGTGTGGCA
ATACACGCGCTCGCATTTTAGTATATAATATGTGCATGTGTGTGGTGTGT
GGGAGAGATATATTAATTTTAGGCATGCCTTATTAGGTGATATCCAGAAA
GAAGAAAAGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAT
AGAAAGAAAGAAAGAAAGACAAAAAGTCAAAACTGACAGGTTGGCACATT
AATCTAATTATTACAATGCCATTTTCTTTTCGTAGTCCAGCCAGTAGTGC
TGCGTTGCTGCCCATGTCGAAACGGTATAAAGTCAAAGGGAGATTACGAG
GAGAAGCCGTTTGCATGATAAACATTGCTCATCGGATCTGACCTGCACAC
AGCCGTTGCAGGTGTACCCCCCTGCCCTCGGCTCACCTACAGCACACCCT
ATACATCTACGCCCACTTCATTGGACCGTTTGAGGTTCTTCATCGTCGAC
TTTACTGGAAGCTGCTACTAATGCTGTTTACGGTCAGTTTAAGCTCGTCG
GGCTCCTCCGCCCCCCACCTCAGCGTGTGCCCCCGCCTGACCCTCCCTCG
GGCCCCCCCCCCGGGGCCCGGCCCTCCTCCCGCCGCGCTCTCAGCGGCGC
GGGCCATGGAGGGGCTCCCGACCAGCACCATGGGCTACGAACTCGCCGCG
TCCCTGCTGCCCGACCCCTGCC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig937:49892..53313-

>mRNA_H-akashiwo_Contig937.1.1 ID=mRNA_H-akashiwo_Contig937.1.1|Name=mRNA_H-akashiwo_Contig937.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=327bp|location=Sequence derived from alignment at H-akashiwo_Contig937:49892..53313- (Heterosigma akashiwo CCMP452)
GACCTGCTGCAGCCCTGGGGCTTCGACGCGGCGCTGGCGTGCGGCGCGGC
CTACGCGTTCCCCGCCAGCGACTGGGACTTCTACGCCGGCCTCGAGGACA
CCGTGCAGTATGGAATCTTCATTGCCATGGCTTTCTGCGTCTTCTTTATT
TTTCTGGACATCATCATTGGAGTGAATCCAAGACTCAATGCTTTGTACTA
CAAGCTCCTGGAGGATCACATTCTGGTTACTCACCATGCTGAAGTCCAAG
CGGCGCGGGCCATGGAGGGGCTCCCGACCAGCACCATGGGCTACGAACTC
GCCGCGTCCCTGCTGCCCGACCCCTGC
back to top