mRNA_H-akashiwo_Contig936.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig936.6.1
Unique NamemRNA_H-akashiwo_Contig936.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig936.6.1 vs. uniprot
Match: F0YFW7_AURAN (Peroxiredoxin-like 2A (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFW7_AURAN)

HSP 1 Score: 142 bits (357), Expect = 5.270e-39
Identity = 81/189 (42.86%), Postives = 113/189 (59.79%), Query Frame = 1
Query:    1 LKPIVNGAISGGSISAGDLLNKP-TVVYVVRRPG*VLCREEGYDLSTLKKEGKLGSADLIGIIKEVAPCATAKTDEELGVDDFNKKYFPY-PLYIDEEMEMYKYLGSRKLTQLPFTWN----PFKLYRSFKAIGERIKAKGLEGNMRGEGLTLGGVLVYSPKSGLVYEYKEVTGRELPVEEIAAAAQGL 549
            L P+ +GA++G ++ A  L +K   +++VVRRPG  LCREE   LS L K  +    + +GIIKEVAP + A  D  LGV +F ++YF    +Y+DE  + Y +LG RKL      +     P K +RS +A+G+R+K+KG+EGNM GEGL LGGVLV      + Y Y E TG   PV+ +  A   L
Sbjct:   38 LLPVADGAVTGAAVPASSLWSKAGALIFVVRRPGXPLCREEARGLSELVKI-RGSRQNFVGIIKEVAPTSQAANDTVLGVGEFERQYFGGGAVYLDEGKQFYGFLGDRKLISTRNVFKALVRPLKTWRSLRAVGDRMKSKGIEGNMVGEGLLLGGVLVVDRDGRVTYSYPETTGEPAPVDAVDEALDAL 225          
BLAST of mRNA_H-akashiwo_Contig936.6.1 vs. uniprot
Match: A0A482S856_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S856_9ARCH)

HSP 1 Score: 129 bits (323), Expect = 1.010e-34
Identity = 64/153 (41.83%), Postives = 102/153 (66.67%), Query Frame = 1
Query:  106 LCREEGYDLSTLKKEGKLGSA-DLIGIIKEVAPCATAKTDEELGVDDFNKKYFP-YPLYIDEEMEMYKYLGSRKLTQ--LPFTWNPFKLYRSFKAIGERIKAKGLEGNMRGEGLTLGGVLVYSPKSGLVYEYKEVTGRELPVEEIAAAAQGLK 552
            +CRE+ ++LS+  K+  L    +++GIIKEVAP   A+ D +LGV +F  ++F  +PLY+D + + Y +LG++ L    LP +WNPFKLY  +K + +R+K KG+EGN+ GEGL  GG+L+ + + G+VY++ E TG  +P + +  A Q  K
Sbjct:    1 MCREDAFELSSRLKDASLDQEFNIVGIIKEVAPVKGAEADTQLGVGEFQSRFFQGFPLYMDADKKFYAHLGNKSLLSQSLP-SWNPFKLYADYKHMTKRVKDKGIEGNLNGEGLLKGGLLIVTKEQGIVYQHNEETGFCMPYDAVIEALQQFK 152          
BLAST of mRNA_H-akashiwo_Contig936.6.1 vs. uniprot
Match: A0A7S2GG07_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG07_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.770e-33
Identity = 68/133 (51.13%), Postives = 96/133 (72.18%), Query Frame = 1
Query:  172 LIGIIKEVAPCATAKTDEELGVDDFNKKYF--PYPLYIDEEMEMYKYLGSRKLTQLPFT--WNPFKLYRSFKAIGERIKAKGLEGNMRGEGLTLGGVLVYSPKSGL--VYEYKEVTGRELPVEEIAAAAQGLK 552
            L+G+IKEVAP   A+TDE LGV +F++KYF   YPLY+DEE   Y+YLG+RKL+ +P +    P+K +R +K++  R+K K +EGNM GEGL  GG+LV +P +GL  +Y Y+EVTG E+P+++     QGLK
Sbjct:   15 LVGVIKEVAPTTQAETDETLGVGEFHEKYFGLQYPLYLDEEKNFYEYLGNRKLS-IPVSAILKPWKAFRYYKSMTARMKEKNIEGNMVGEGLVQGGLLVIAPGTGLDVLYRYEEVTGSEVPMDDFV---QGLK 143          
BLAST of mRNA_H-akashiwo_Contig936.6.1 vs. uniprot
Match: A0A7S3JYT0_9STRA (Peroxiredoxin-like 2A n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYT0_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.050e-31
Identity = 65/140 (46.43%), Postives = 91/140 (65.00%), Query Frame = 1
Query:  148 EGKLGSADLIGIIKEVAPCATAKTDEELGVDDFNKKYFP-YPLYIDEEMEMYKYLGSRKLTQL----PFTWNPFKLYRSFKAIGERIKAKGLEGNMRGEGLTLGGVLVYSPKSGLVYEYKEVTGRELPVEEIAAAAQGLK 552
            E +  S  L+GIIKEVAP   A+ D  LGVD+F KKYF   PLY+DE+   Y++LG+RKL  L        NPF  Y + K IGER++ KG+EGNM GEGL LGGVLV +P    +++++E+TG  + +++ + A   L+
Sbjct:    3 EKRASSVPLVGIIKEVAPTKQAQNDTVLGVDEFQKKYFAGAPLYLDEKKLFYQFLGNRKLITLGGFLKALINPFNTYNALKEIGERMRTKGIEGNMVGEGLVLGGVLVIAPDGTTLFQHQEITGTIVDLDKASKALDILE 142          
BLAST of mRNA_H-akashiwo_Contig936.6.1 vs. uniprot
Match: A0A7S1G034_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G034_9STRA)

HSP 1 Score: 109 bits (273), Expect = 4.220e-27
Identity = 67/158 (42.41%), Postives = 95/158 (60.13%), Query Frame = 1
Query:   70 TVVYVVRRPG*VLCREEGYDLSTLKKEGKLGSADLIGIIKEVAPCATAKTDEELGVDDFNKKYFPYPLYIDEEMEMYKYLGSRKLTQLPFTWNPFK-LYRSFKAIGERIKAKGLEGNMRGEGLTLGGVLVYSPKSGLVYEYKEVTGRELPVEEIAAAA 540
            T++++ RRPG   CRE+  DLS L +  KL   +L+GI+KEV      + D+E G+   + KYFPYPLY+DE+  MY+ +G+R +     T+NP K L  S+ A+  R+  K +EGN +GEGL  GGV++        Y Y E T  ELP+E I  AA
Sbjct:   11 TIIFLARRPGCHFCREQCLDLSELLRANKLEGFNLMGIVKEV------EVDDE-GLSLMHSKYFPYPLYLDEDYVMYEAMGNRTVKFR--TYNPVKWLTYSWTAL-RRLNKKKIEGNFKGEGLVQGGVIICDSHGNPRYSYLEETMEELPMECIVEAA 158          
BLAST of mRNA_H-akashiwo_Contig936.6.1 vs. uniprot
Match: A0A7S1YHB2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YHB2_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.980e-24
Identity = 58/130 (44.62%), Postives = 81/130 (62.31%), Query Frame = 1
Query:  172 LIGIIKEVAPCATAKTDEELGVDDFNKKYFPYPLYIDEEMEMYKYLGSRKLTQLPFTWNPFKLYRSF---KAIGERIKAKGLEGNMRGEGLTLGGVLVYSPKSGLVYEYKEVTGRELPVEEIAAAAQGLK 552
            ++G+IKE     T   DE L    F+ KY+PYPLY DE ++ Y YLG+RKL +    +NP    + F   +A+G+R+KAK ++GNM GEGLT GGV+++       Y Y+E    E+PVEEI AA Q +K
Sbjct:    6 MVGVIKE-----TGVDDEYLT--SFHDKYYPYPLYRDENLDFYSYLGNRKL-EFNVGYNPINWVKGFFGLRAVGKRLKAKNIDGNMNGEGLTKGGVVIFGKDGTPKYAYQE--DGEMPVEEILAAVQMVK 125          
BLAST of mRNA_H-akashiwo_Contig936.6.1 vs. uniprot
Match: B8C3P5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3P5_THAPS)

HSP 1 Score: 102 bits (253), Expect = 1.640e-23
Identity = 54/152 (35.53%), Postives = 86/152 (56.58%), Query Frame = 1
Query:  103 VLCREEGYDLSTL--KKEGKLGSADLIGIIKEVAPCATAKTDEELGVDDFNKKYFPYPLYIDEEMEMYKYLGSRKLTQLPFTWNPFKLYRSFKAIGERIKAKGLEGNMRGEGLTLGGVLVYSPKSGLVYEYKEVTGRELPVEEIAAAAQGLK 552
            VLCREE   ++ L  + +  L    + GI+KEV         +++G+ +F  +YFP+ LY DE+   Y  LG RKL     TWNP K+    + + +R+  K + GNM+GEGL  GG++++       + Y+E TG E+P+++I A  + LK
Sbjct:   74 VLCREEARSIAELAARDDKPLDGFGIFGIVKEVGV-------DDVGLAEFQTEYFPFDLYRDEQTAFYSALGLRKLKVS--TWNPIKIVMGIRNMYKRLARKNISGNMKGEGLVQGGIIIFDKTGTARFAYREETGIEVPIDDIIAVVRHLK 216          
BLAST of mRNA_H-akashiwo_Contig936.6.1 vs. uniprot
Match: A0A1Z5KLP9_FISSO (Prostamide/prostaglandin F2alpha synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLP9_FISSO)

HSP 1 Score: 100 bits (250), Expect = 4.660e-23
Identity = 54/155 (34.84%), Postives = 92/155 (59.35%), Query Frame = 1
Query:   70 TVVYVVRRPG*VLCREEGYDLSTLKKEGKLGSADLIGIIKEVAPCATAKTDEELGVDDFNKKYF-PYPLYIDEEMEMYKYLGSRKLTQLPFTWNPFKLYRSFKAIGERIKAKGLEGNMRGEGLTLGGVLVYSPKSGLVYEYKEVTGRELPVEEIA 531
            T+V+  RRPG VLCRE G  LS L+   K+    ++G++KE+         ++ G+  F K+YF  +P+Y+DE++++YK +G+R + ++      FKL  + + +  R+  K +EGN+ GEG   GG+L++  K  LV+   E   +EL + E+A
Sbjct:   47 TIVFAARRPGCVLCREHGKQLSNLQSSPKIA---VLGVVKEIGV-------DDAGLKTFQKEYFNSWPIYLDEDLQLYKIMGNRSIFKVK---TMFKLLGNMRKLSRRMSQKRIEGNLVGEGTIQGGILIFDGKGDLVHVQLEDITKELNMSEMA 188          
BLAST of mRNA_H-akashiwo_Contig936.6.1 vs. uniprot
Match: A0A1Z5KN03_FISSO (Prostamide/prostaglandin F2alpha synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KN03_FISSO)

HSP 1 Score: 99.8 bits (247), Expect = 1.210e-22
Identity = 55/155 (35.48%), Postives = 90/155 (58.06%), Query Frame = 1
Query:   70 TVVYVVRRPG*VLCREEGYDLSTLKKEGKLGSADLIGIIKEVAPCATAKTDEELGVDDFNKKYF-PYPLYIDEEMEMYKYLGSRKLTQLPFTWNPFKLYRSFKAIGERIKAKGLEGNMRGEGLTLGGVLVYSPKSGLVYEYKEVTGRELPVEEIA 531
            T+V+  RRPG VLCRE G  LS L          ++G++KE+         ++ G+  F+K YF  +P+Y+DE++++YK +G+R + ++      FKL  + + + +R+  K +EGNM GEG   GG+L++  K  LV+   E   +EL + EIA
Sbjct:   47 TIVFAARRPGCVLCREHGKQLSNLSSN----KIAVLGVVKEIGV-------DDAGLKSFHKDYFNSWPIYLDEDLQLYKAMGNRSIFKIKTI---FKLLSNMRKLSKRMSQKKIEGNMVGEGTIQGGILIFDGKGDLVHVQLEDITKELNMSEIA 187          
BLAST of mRNA_H-akashiwo_Contig936.6.1 vs. uniprot
Match: K0T8I1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T8I1_THAOC)

HSP 1 Score: 97.1 bits (240), Expect = 1.360e-22
Identity = 59/140 (42.14%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  142 KKEGKLGSADLIGIIKEVAPCATAKTDEELGVDDFN---KKYFPYPLYIDEEMEMYKYLGSRKLTQLPFTWNPFKLYRSFKAIGERIKAKGLEGNMRGEGLTLGGVLVYSPKSGLVYEYKEVTGRELPVEEIAAAAQGLK 552
            + +  L    LIG+IKE             GVDD     +K F      DEE   YK LGSRKL     +WNP K++R  + +G R+K KG+ GN +GEGL  GGV+++       Y Y+E TG ELPVE+IAAA + LK
Sbjct:    3 RDDNPLDGFGLIGLIKET------------GVDDAGISPRKSFTSDSS-DEETAFYKALGSRKLGLT--SWNPIKIFRGLREVGRRLKEKGISGNFKGEGLVQGGVVIFDSAGNPRYAYREKTGEELPVEDIAAAVKALK 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig936.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0YFW7_AURAN5.270e-3942.86Peroxiredoxin-like 2A (Fragment) n=1 Tax=Aureococc... [more]
A0A482S856_9ARCH1.010e-3441.83Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2GG07_9STRA1.770e-3351.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3JYT0_9STRA1.050e-3146.43Peroxiredoxin-like 2A n=1 Tax=Aureoumbra lagunensi... [more]
A0A7S1G034_9STRA4.220e-2742.41Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1YHB2_9STRA6.980e-2444.62Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
B8C3P5_THAPS1.640e-2335.53Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A1Z5KLP9_FISSO4.660e-2334.84Prostamide/prostaglandin F2alpha synthase n=1 Tax=... [more]
A0A1Z5KN03_FISSO1.210e-2235.48Prostamide/prostaglandin F2alpha synthase n=1 Tax=... [more]
K0T8I1_THAOC1.360e-2242.14Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig936contigH-akashiwo_Contig936:68247..68801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0T8I1
PFAMsAhpC-TSA_2
Model size555
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.75e-22
EggNOG OGs2F1YT@1|root,2SXJ8@2759|Eukaryota,2XGX4@2836|Bacillariophyta
DescriptionAhpC/TSA antioxidant enzyme
Cds size267
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388049.693843-CDS-H-akashiwo_Contig936:68246..685131681388049.693843-CDS-H-akashiwo_Contig936:68246..68513Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig936 68247..68513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388049.7111266-UTR-H-akashiwo_Contig936:68513..688011681388049.7111266-UTR-H-akashiwo_Contig936:68513..68801Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig936 68514..68801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig936.6.1prot_H-akashiwo_Contig936.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig936 68247..68513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig936.6.1

>prot_H-akashiwo_Contig936.6.1 ID=prot_H-akashiwo_Contig936.6.1|Name=mRNA_H-akashiwo_Contig936.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=89bp
MEMYKYLGSRKLTQLPFTWNPFKLYRSFKAIGERIKAKGLEGNMRGEGLT
LGGVLVYSPKSGLVYEYKEVTGRELPVEEIAAAAQGLK*
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mRNA from alignment at H-akashiwo_Contig936:68247..68801-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig936.6.1 ID=mRNA_H-akashiwo_Contig936.6.1|Name=mRNA_H-akashiwo_Contig936.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=555bp|location=Sequence derived from alignment at H-akashiwo_Contig936:68247..68801- (Heterosigma akashiwo CCMP452)
CTGAAGCCTATAGTAAATGGTGCCATTTCTGGAGGCTCAATATCAGCTGG TGATCTTTTGAACAAGCCAACCGTTGTTTACGTTGTTCGCCGCCCTGGAT GAGTTCTGTGTCGGGAGGAAGGCTACGACCTCTCGACGTTAAAAAAGGAA GGGAAACTTGGTAGTGCGGATCTCATTGGAATCATTAAAGAAGTTGCGCC TTGTGCCACTGCCAAAACCGACGAAGAGCTAGGTGTGGATGATTTCAACA AAAAATACTTTCCTTATCCACTCTATATTGACGAAGAAATGGAAATGTAC AAGTACCTGGGTTCCAGAAAGCTGACGCAGCTGCCCTTTACATGGAACCC TTTCAAGCTGTACAGGTCATTCAAGGCCATCGGCGAAAGAATCAAAGCAA AGGGTCTGGAAGGTAACATGAGAGGCGAAGGTTTGACACTTGGCGGTGTT TTGGTGTACTCTCCCAAAAGTGGGCTGGTGTATGAGTACAAGGAGGTCAC AGGAAGAGAACTCCCAGTTGAAGAGATTGCAGCTGCAGCCCAGGGCTTGA AGTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig936:68247..68801-

>mRNA_H-akashiwo_Contig936.6.1 ID=mRNA_H-akashiwo_Contig936.6.1|Name=mRNA_H-akashiwo_Contig936.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=267bp|location=Sequence derived from alignment at H-akashiwo_Contig936:68247..68801- (Heterosigma akashiwo CCMP452)
ATGGAAATGTACAAGTACCTGGGTTCCAGAAAGCTGACGCAGCTGCCCTT
TACATGGAACCCTTTCAAGCTGTACAGGTCATTCAAGGCCATCGGCGAAA
GAATCAAAGCAAAGGGTCTGGAAGGTAACATGAGAGGCGAAGGTTTGACA
CTTGGCGGTGTTTTGGTGTACTCTCCCAAAAGTGGGCTGGTGTATGAGTA
CAAGGAGGTCACAGGAAGAGAACTCCCAGTTGAAGAGATTGCAGCTGCAG
CCCAGGGCTTGAAGTAG
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