mRNA_H-akashiwo_Contig936.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig936.3.1
Unique NamemRNA_H-akashiwo_Contig936.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig936.3.1 vs. uniprot
Match: A0A7S3XTD4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTD4_HETAK)

HSP 1 Score: 68.9 bits (167), Expect = 6.400e-10
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 3 
Query:  207 MSFNFGAAASSGAPAGGFSFGSSTPAAAPAPATXXXXXXXXXXXXSTAAPAPA 365
            MSFNFGAAASSGAPAGGFSFGSSTPAAAPAPATXXXXXXXXXXXXSTAAPAPA
Sbjct:    1 MSFNFGAAASSGAPAGGFSFGSSTPAAAPAPATXXXXXXXXXXXXSTAAPAPA 53
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig936.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XTD4_HETAK6.400e-10100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig936contigH-akashiwo_Contig936:39424..41180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size875
Hectar predicted targeting categoryother localisation
Exons3
Cds size669
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388049.6262174-UTR-H-akashiwo_Contig936:39423..396291681388049.6262174-UTR-H-akashiwo_Contig936:39423..39629Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig936 39424..39629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388049.641118-CDS-H-akashiwo_Contig936:39629..399231681388049.641118-CDS-H-akashiwo_Contig936:39629..39923Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig936 39630..39923 +
1681388049.6515088-CDS-H-akashiwo_Contig936:40112..401841681388049.6515088-CDS-H-akashiwo_Contig936:40112..40184Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig936 40113..40184 +
1681388049.6614628-CDS-H-akashiwo_Contig936:40877..411801681388049.6614628-CDS-H-akashiwo_Contig936:40877..41180Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig936 40878..41180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig936.3.1prot_H-akashiwo_Contig936.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig936 39630..41180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig936.3.1

>prot_H-akashiwo_Contig936.3.1 ID=prot_H-akashiwo_Contig936.3.1|Name=mRNA_H-akashiwo_Contig936.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=223bp
MSFNFGAAASSGAPAGGFSFGSSTPAAAPAPATGGFSFGSSAPAASTAAP
APAAGGFSFGAATPAKAPAPAAGGFSFGASTPAPASEPCPAPAGGFSFVP
RLQPQQQQQMPSQLEEADSALEHQHRLQGRRHQQRHQLLQEGFHLVQPQV
KMLAQQRIRRPPLLLLQRLGGFLLVALLQHQPQLLPAEEASLFHQQQQQQ
KTKTRPLLPLPQLPHPASPSQQQ
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mRNA from alignment at H-akashiwo_Contig936:39424..41180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig936.3.1 ID=mRNA_H-akashiwo_Contig936.3.1|Name=mRNA_H-akashiwo_Contig936.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1757bp|location=Sequence derived from alignment at H-akashiwo_Contig936:39424..41180+ (Heterosigma akashiwo CCMP452)
AGCAGATTCAAATTGAGATTGGAGGATATAACCCGAGAAATCCAGCAGCA
ACAGGAGAGAAGTGTATACTGGAGAATCTACTGATTCTTATCATCCCTGT
ATGAAGAACTGGAGAATCTCCTTTAGTTAGAGTCAGGAGAAAGTAGTCAT
CGACTGCGTCGTTTCTATACCTGCCTTCTTTGCAATCTCTTCGAAAGCTG
TTGAAAATGTCCTTCAATTTTGGGGCAGCAGCATCCAGTGGTGCGCCTGC
AGGAGGTTTCAGCTTCGGCTCTAGCACACCTGCAGCAGCACCTGCTCCTG
CTACGGGTGGGTTCTCTTTTGGAAGCTCAGCCCCTGCTGCCTCGACTGCG
GCGCCAGCGCCTGCGGCTGGAGGGTTCTCCTTTGGCGCCGCGACCCCAGC
AAAAGCGCCAGCGCCAGCAGCGGGGGGGTTCTCCTTTGGTGCTTCAACCC
CGGCCCCAGCGTCGGAGCCCTGCCCCGCACCAGCGGGAGGATTCTCTTTT
GTAAACACTTGCATATTCCTTACCAAAAAAAAACATAAAAAAGTAGCAAA
GTTATTATTTTTATTATTTTTTTTTTTTTTTTGGTTTCCCCCATTCACCA
ATTAGTACCCAAAGGAACACAAAGCATTGCTATGCTGTAAGTACCAACCC
TCTGTGAAAAAAAAAACTCTATTGATGGTATTCAATTAGGTGCCACGACT
TCAACCCCAGCAGCAGCAACAGATGCCAAGCCAGCTGGAGgaaGCGGATT
CAGCTTTGGAGGTATGCTTTCCCTCCTCATATTGGTTACTAAAAAGAATT
TTTTGTTGATGGTCACAAAAACTGGTGACATGCTGTGTTATGATTACAGT
CATAGTGTGTTTATAAATATCGGAGTTGAGTCGAAACCTCCTGGAGTGGA
CGACTTACGGAAGGGTACAGCGATCTGACAGAGCGGTAACAGAAGGAGGT
CGTCAGCGAAGGATGGTCGTCCGAGGTGCATCAAGGAGATGTTCGCGAGC
ATTGGAAGGCGCGATGATACGAGCGCCAACACTACAAGGTTCACATCGAC
AAGCTCAGAGATGGCTCAACATGACAGAAAGGGTCGCGGCTGGAGTAGAG
GACCTTCCTCAGGATGTGACGAGGCATGAGAACGTATAAAAAAAAAAATA
AAAAAAAAAAAAAAATATTGAGTGCATGATTTCTCACTCATCTTTTATCA
ACAAGATGCAAAAAAAAATCCTTGCTACTTACTTACATGCATGCACAGAC
GGCATATATGGATGGGCTATAAAATGAAATTCGTTGACTTTTATTTTATG
CAGCATGTTTGAAGCAGAATCTGTATTTATTTTGAGAGTATTCTTCGCTT
GCATGTTGTGTTGGTTGGGGGGGGGACAGTTGTAGACTGCTTTGTTTTAG
TGAAATTGCCGCGCATGAACTGATGCTTAATTTTCGTTGTCACTACTGCA
CCAGCACCAGCACCGGCTGCAGGGGCGGCGGCACCAGCAGCGGCACCAGC
TGCTGCAGGAGGGTTTTCATTTGGTGCAACCCCAAGTAAAGATGCTAGCA
CAGCAGCGGATAAGGCGCCCGCCCCTGCTCCTGCTGCAGCGGCTGGGGGG
TTTTCTTTTGGTGGCGCTTCTGCAACACCAGCCTCAGCTGCTGCCGGCGG
AGGAGGCTTCTCTTTTTCATCAACAGCAGCAGCAGCAAAAGACAAAGACA
CGGCCGCTCCTGCCCCTGCCCCAGCTGCCACATCCGGCTTCTCCTTCGCA
GCAGCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig936:39424..41180+

>mRNA_H-akashiwo_Contig936.3.1 ID=mRNA_H-akashiwo_Contig936.3.1|Name=mRNA_H-akashiwo_Contig936.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=669bp|location=Sequence derived from alignment at H-akashiwo_Contig936:39424..41180+ (Heterosigma akashiwo CCMP452)
ATGTCCTTCAATTTTGGGGCAGCAGCATCCAGTGGTGCGCCTGCAGGAGG
TTTCAGCTTCGGCTCTAGCACACCTGCAGCAGCACCTGCTCCTGCTACGG
GTGGGTTCTCTTTTGGAAGCTCAGCCCCTGCTGCCTCGACTGCGGCGCCA
GCGCCTGCGGCTGGAGGGTTCTCCTTTGGCGCCGCGACCCCAGCAAAAGC
GCCAGCGCCAGCAGCGGGGGGGTTCTCCTTTGGTGCTTCAACCCCGGCCC
CAGCGTCGGAGCCCTGCCCCGCACCAGCGGGAGGATTCTCTTTTGTGCCA
CGACTTCAACCCCAGCAGCAGCAACAGATGCCAAGCCAGCTGGAGgaaGC
GGATTCAGCTTTGGAGCACCAGCACCGGCTGCAGGGGCGGCGGCACCAGC
AGCGGCACCAGCTGCTGCAGGAGGGTTTTCATTTGGTGCAACCCCAAGTA
AAGATGCTAGCACAGCAGCGGATAAGGCGCCCGCCCCTGCTCCTGCTGCA
GCGGCTGGGGGGTTTTCTTTTGGTGGCGCTTCTGCAACACCAGCCTCAGC
TGCTGCCGGCGGAGGAGGCTTCTCTTTTTCATCAACAGCAGCAGCAGCAA
AAGACAAAGACACGGCCGCTCCTGCCCCTGCCCCAGCTGCCACATCCGGC
TTCTCCTTCGCAGCAGCAG
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