mRNA_H-akashiwo_Contig934.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig934.4.1
Unique NamemRNA_H-akashiwo_Contig934.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig934.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig934contigH-akashiwo_Contig934:294741..295365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size625
Hectar predicted targeting categorysignal peptide
Exons1
Cds size507
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388049.2710211-UTR-H-akashiwo_Contig934:294740..2948411681388049.2710211-UTR-H-akashiwo_Contig934:294740..294841Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig934 294741..294841 +
1681388049.2925055-UTR-H-akashiwo_Contig934:295348..2953651681388049.2925055-UTR-H-akashiwo_Contig934:295348..295365Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig934 295349..295365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388049.2827516-CDS-H-akashiwo_Contig934:294841..2953481681388049.2827516-CDS-H-akashiwo_Contig934:294841..295348Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig934 294842..295348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig934.4.1prot_H-akashiwo_Contig934.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig934 294842..295348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig934.4.1

>prot_H-akashiwo_Contig934.4.1 ID=prot_H-akashiwo_Contig934.4.1|Name=mRNA_H-akashiwo_Contig934.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=169bp
MLSRRWLGGSVLIGIKAAAELNHSFFIEIEGFGRGDEGGLCRTSSFFTLA
LAALGRRLKGTITSSGSFRCSVSGLESESHSNGAGAGGPKSSNSRTSDRK
DPLRLDDLVIMISISAKKESFRCEAFEFLSIILSISETNESLRPSIIISR
SPNKESFLDVAIKHGLVQ*
back to top

mRNA from alignment at H-akashiwo_Contig934:294741..295365+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig934.4.1 ID=mRNA_H-akashiwo_Contig934.4.1|Name=mRNA_H-akashiwo_Contig934.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=625bp|location=Sequence derived from alignment at H-akashiwo_Contig934:294741..295365+ (Heterosigma akashiwo CCMP452)
GGCTGAGTGGGGAAGGCCTTCTCTCTTCGGATTCCATCAGTTCCTTTTTC
AGAAAGAAATTGATCACGTCTAAGGACTCCGACCGTTTCCTCTTGAGATC
AATGCTCTCGCGTCGTTGGCTTGGGGGCTCCGTTTTGATCGGCATAAAGG
CCGCCGCGGAGCTGAACCACTCTTTCTTCATTGAAATTGAAGGCTTTGGG
CGAGGAGATGAAGGAGGACTTTGTCGCACAAGTTCTTTCTTTACTTTGGC
CCTCGCTGCATTGGGAAGGAGATTGAAAGGCACAATTACATCATCTGGCT
CTTTCCGCTGTAGCGTCTCAGGGCTCGAGTCAGAATCACATAGCAATGGA
GCAGGAGCTGGAGGACCAAAATCTTCGAACTCCAGAACCTCAGACAGGAA
GGACCCTTTGCGATTGGATGATTTGGTCATCATGATCTCGATTTCAGCGA
AAAAAGAGTCTTTTCGTTGCGAGGCCTTTGAGTTCTTATCCATCATACTC
TCTATTTCTGAGACGAACGAATCCTTACGACCAAGCATCATCATCTCCAG
ATCCCCGAACAAGGAGTCTTTCCTCGACGTGGCCATCAAGCATGGATTGG
TTCAGTAACCCTTCCCTTTCAAAAT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig934:294741..295365+

>mRNA_H-akashiwo_Contig934.4.1 ID=mRNA_H-akashiwo_Contig934.4.1|Name=mRNA_H-akashiwo_Contig934.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=507bp|location=Sequence derived from alignment at H-akashiwo_Contig934:294741..295365+ (Heterosigma akashiwo CCMP452)
ATGCTCTCGCGTCGTTGGCTTGGGGGCTCCGTTTTGATCGGCATAAAGGC
CGCCGCGGAGCTGAACCACTCTTTCTTCATTGAAATTGAAGGCTTTGGGC
GAGGAGATGAAGGAGGACTTTGTCGCACAAGTTCTTTCTTTACTTTGGCC
CTCGCTGCATTGGGAAGGAGATTGAAAGGCACAATTACATCATCTGGCTC
TTTCCGCTGTAGCGTCTCAGGGCTCGAGTCAGAATCACATAGCAATGGAG
CAGGAGCTGGAGGACCAAAATCTTCGAACTCCAGAACCTCAGACAGGAAG
GACCCTTTGCGATTGGATGATTTGGTCATCATGATCTCGATTTCAGCGAA
AAAAGAGTCTTTTCGTTGCGAGGCCTTTGAGTTCTTATCCATCATACTCT
CTATTTCTGAGACGAACGAATCCTTACGACCAAGCATCATCATCTCCAGA
TCCCCGAACAAGGAGTCTTTCCTCGACGTGGCCATCAAGCATGGATTGGT
TCAGTAA
back to top