mRNA_H-akashiwo_Contig934.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig934.2.1
Unique NamemRNA_H-akashiwo_Contig934.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig934.2.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 468 bits (1204), Expect = 1.100e-163
Identity = 238/340 (70.00%), Postives = 260/340 (76.47%), Query Frame = 1
Query:   79 MELHDHLLSLGFQRSGHESCLYVRREGGNELMVAIYVDDLVVSGSSPALVSDFKQSLASKYDLTDQWELTQILGIKVVWDKRDKCFYLSQISFIKDALSMFGLDYLPACATPMDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAE-------------------------------------------------------------LTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFRVSYHLAKEQVSLGTIRMFFTKTHDQVADIFTKALNAENF 915
            MELHDHL SLGF+RSGHESCLY+ R+GGNELMVA+YVDDLV+SGSS A+VS+FKQSLASKY LTDQ ELTQILGIKVV DKR+KCF+LSQ SFIKDAL+ FGLDYLPAC TP+DHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQ NPE KHFEA +                                                             +TTSTVEAEYLALRS+VKDIMWLR LL ++GCPQ EPTPVVEDNSAC+EWAND++V+K+NRHF VSYHLAKEQVSLGTIRMF+ KTHDQVADI TKALNA NF
Sbjct:    1 MELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANF 340          
BLAST of mRNA_H-akashiwo_Contig934.2.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 364 bits (935), Expect = 4.320e-124
Identity = 172/199 (86.43%), Postives = 188/199 (94.47%), Query Frame = 1
Query:   10 YPNKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYVRREGGNELMVAIYVDDLVVSGSSPALVSDFKQSLASKYDLTDQWELTQILGIKVVWDKRDKCFYLSQISFIKDALSMFGLDYLPACATPMDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAE 606
            +PNKVWKLNKALYGL+QSPR+WYMELHDHL SLGF+RSGHESCLY+ R+GGNELMVA+YVDDLV+SGSS A+VS+FKQSLASKY+LTDQ ELTQILGIKVV DKR+KCF+LSQ SFIKDAL+ FGLDYLPAC TP+DHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQ NPE KHFEA +
Sbjct:   64 HPNKVWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQ 262          
BLAST of mRNA_H-akashiwo_Contig934.2.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 205 bits (522), Expect = 7.540e-60
Identity = 98/158 (62.03%), Postives = 118/158 (74.68%), Query Frame = 1
Query:   10 YPNKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYVRREG--GNELMVAIYVDDLVVSGSSPALVSDFKQSLASKYDLTDQWELTQILGIKVVWDKRDKCFYLSQISFIKDALSMFGLDYLPACATPMDHTVDLTPTPGFKAELSDAN 477
            +P+KVWKL KALYGLRQSPR+WY  LH+ LL   F RS +ESCLY R+    G + MVA+YVDDLV+S + P++VS  K S  S++ +TD   LT ILGIKV  D  +KCFYLSQ SF++DA+S FGLDYLPAC TPM +  DLTPTPGFKA L DAN
Sbjct:  252 HPHKVWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDAN 409          
BLAST of mRNA_H-akashiwo_Contig934.2.1 vs. uniprot
Match: A0A2N9HE67_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HE67_FAGSY)

HSP 1 Score: 184 bits (468), Expect = 1.040e-50
Identity = 103/304 (33.88%), Postives = 165/304 (54.28%), Query Frame = 1
Query:    4 STYPNKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYVRREGGNELMVAIYVDDLVVSGSSPALVSDFKQSLASKYDLTDQWELTQILGIKVVWDKRDKCFYLSQISFIKDALSMFGLDYLPACATPMDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAELTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFRVSYHLAKEQVSLGTIRMFFTKTHDQVADIFTKALNAENF 915
            S  PNKV  L++ALYGL+Q+PR W+ +  + +    F  S H++ L++RR     +++ +YVDD++++G+  + +SDFKQ L  ++ + D   L   LG++V  D     +YLSQ  +  D LS   L      +TP++    LTP  G    LSDA LYR +VG+L ++   T P++A+ VH  Q               ++ S+ EAEY AL  +  +++ LR LL D+G     PT +  DN + I+ A++ V  ++ +H  +  HL +  +S G +R+    + DQ ADIFTK      F
Sbjct:  235 SNCPNKVCLLHRALYGLKQAPRAWFAKFSNTVHQFSFSSSPHDTTLFIRRSDQGMILLLLYVDDMIITGNDHSGISDFKQFLHQQFKMKDLGHLGYFLGLEVSSDSIG--YYLSQTKYTSDLLSRASLTDTKVVSTPLEMNARLTPLDG--TPLSDATLYRQLVGSLVYLTV-TLPDIAYAVHLKQHI-------------VSRSSTEAEYRALADTTSELLALRWLLEDMGLTHSSPTVIHCDNRSAIQIAHNDVFHERTKHIEIDCHLVRHHLSAGILRLLPVSSSDQTADIFTKTFPPSRF 520          
BLAST of mRNA_H-akashiwo_Contig934.2.1 vs. uniprot
Match: A0A5H2XV49_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XV49_PRUDU)

HSP 1 Score: 185 bits (470), Expect = 3.290e-49
Identity = 115/329 (34.95%), Postives = 174/329 (52.89%), Query Frame = 1
Query:    7 TYPNKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYVRR-EGGNELMVAIYVDDLVVSGSSPALVSDFKQSLASKYDLTDQWELTQILGIKVVWDKRDKCFYLSQISFIKDALSMFGLDYLPACATPMDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAE-------------------------LTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFRVSYHLAKEQVSLGTIRMFFTKTHDQVADIFTKALNAENF 915
            T  +KV+KL KALYGL+Q+PR WY E+  +L S  F+RS  E+ LY R  E G  ++V+IYVDD+V +G+S AL+S+FK+ +  KY++TD   L   LG+ V+  + +   ++ Q  + K  L  FGL+   +   P+     L    G  ++L+D  L+R +VG+L ++   TRP++ F    L R   +P  KH   A+                         +  ST EAEY++   ++   +WLR +L D G  Q + TP+  DN + I        S K RH    YH  +E +  G I M F ++ +Q+ADIFTKAL  + F
Sbjct:  608 TASHKVYKLKKALYGLKQAPRAWYSEIDTYLTSCNFKRSTSEATLYTRTDEEGKLIIVSIYVDDIVYTGNSNALLSEFKRDMMQKYEMTDLGLLHHFLGMGVL--QTENGVFIHQSKYAKSLLVKFGLEDCKSVTIPLPTGEKLKKVDG--SQLADEGLFRKIVGSLLYLTA-TRPDIMFAASLLSRFMHSPTKKHMGIAKRVLIYIQGTLSYGIEFTRDMNAQNTVALSTAEAEYVSAAEAIAQAIWLRFVLDDFGEMQPDATPLFCDNMSAI--------SMKTRHINRRYHFIREALQEGVIDMRFCRSEEQLADIFTKALPKDRF 923          
BLAST of mRNA_H-akashiwo_Contig934.2.1 vs. uniprot
Match: UPI00098DD449 (uncharacterized protein LOC109818890 n=1 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098DD449)

HSP 1 Score: 175 bits (443), Expect = 2.210e-48
Identity = 108/363 (29.75%), Postives = 176/363 (48.48%), Query Frame = 1
Query:   16 NKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYVRREGGNELMVAIYVDDLVVSGSSPALVSDFKQSLASKYDLTDQWELTQILGIKVVWDKRDKCFYLSQISFIKDALSMFGLDYLPACATPMDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAE---------------------------------------------------------------LTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFRVSYHLAKEQVSLGTIRMFFTKTHDQVADIFTKALNAENF 915
            +KV +L K LYGL+Q+ R W + +  +     F +  +E  LY++ +G + L+V +YVDDL+ +G++P++  +FK+ +  ++++TD   +   LGI+V   + ++  +++Q S+ KD L  F LD      TPM+  + L+     + E  D  LY+S+VG+L ++   TRP++ + V  + R    P   H + A+                                                               +T ST EAEY+A  S V   +WLR+LL +L  PQ EPT +  DN + I  A + V   +++H    YH  +E +S   ++M + KTHDQVADIFTK L  E F
Sbjct:   16 DKVLRLKKVLYGLKQALRAWNVRIDKYFKEANFIKCPYEHALYIKAQGKDILIVCLYVDDLIFTGNNPSMFEEFKKDMTKEFEMTDMGLMAYYLGIEV--KQGNEGIFITQESYAKDLLKKFKLDDANPVGTPMECGIKLSKDE--EGEKVDPTLYKSLVGSLRYLT-CTRPDILYAVGVVSRYMEAPTTTHLKTAKRILRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQVEPTKIYVDNKSAIALAKNPVFHDRSKHIHTRYHYIRECISNKDVQMEYVKTHDQVADIFTKPLKKEVF 373          
BLAST of mRNA_H-akashiwo_Contig934.2.1 vs. uniprot
Match: A0A8J5Z1M9_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Z1M9_9ROSI)

HSP 1 Score: 178 bits (452), Expect = 4.550e-48
Identity = 111/302 (36.75%), Postives = 167/302 (55.30%), Query Frame = 1
Query:   16 NKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYVRREGGNELM-VAIYVDDLVVSGSSPALVSDFKQSLASKYDLTDQWELTQILGIKVVWDKRDKCFYLSQISFIKDALSMFGLDYLPACATPMDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAELT------TSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFRVSYHLAKEQVSLGTIRMFFTKTHDQVADIFTKAL 900
            +KV+KL KALYGL+Q+PR WY  +  +L  LGF++S  E  LYV++     L+ V+IYVDDL+V+GS   LV++FK  +   +D+TD   +T  LG++V  ++ D+  ++SQ +FI   L+ F +      +T M     L+   G    + D   YRS+VG L ++   TRP+L   V  L R        HF AA+        T  +EAEY+A  ++V   +WLR LL DL   Q EPT +  DN + +  A + V   K +HF++ +H  +E    G + +    + DQ+ADI TK L
Sbjct:  248 DKVYKLKKALYGLKQAPRAWYDRVDAYLSKLGFEKSLSEPTLYVKKSKDETLLIVSIYVDDLLVTGSKDVLVNEFKAQMQEVFDMTDLGVMTYFLGMEV--NQTDRRIFISQHAFILKILNKFSMQNCKPVSTLMAQGEKLSSI-GDHVRV-DEKEYRSLVGCLLYLTA-TRPDLMHVVSLLTRFMHCCNVLHFRAAKRVLRYIKGTLMLEAEYIAAVAAVNQAIWLRKLLYDLNEEQLEPTEIKVDNQSAVAIAKNPVFHGKTKHFKMKFHFVREVEKTGEVSLVHCSSQDQLADILTKPL 544          
BLAST of mRNA_H-akashiwo_Contig934.2.1 vs. uniprot
Match: A0A1U8KW07_GOSHI (uncharacterized protein LOC107921232 n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8KW07_GOSHI)

HSP 1 Score: 174 bits (441), Expect = 1.160e-47
Identity = 98/299 (32.78%), Postives = 166/299 (55.52%), Query Frame = 1
Query:   22 VWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYVRREGGN-ELMVAIYVDDLVVSGSSPALVSDFKQSLASKYDLTDQWELTQILGIKVVWDKRDKCFYLSQISFIKDALSMFGLDYLPACATPMDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAELTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFRVSYHLAKEQVSLGTIRMFFTKTHDQVADIFTKALNAENF 915
            V++L  ALYGL+Q+PR W   +  +L+SLGF+RS  E  LYV++E    +L+V++YVDDL+V+G    +++DFK  +   ++++D  ++T  LG++V+  +     +L Q +F    LS F ++     +TPM   + L+    +  E +  + YRS+VG L ++   TRP++ F V  L   Q + +        +  ST EAEY+A  ++V   +WLR +L DL   Q+E T +  DN + +  A +LV   + +HF +  H+ ++      + +    +  Q+ADIF KA N   F
Sbjct:  124 VYRLKNALYGLKQAPRAWCARIDSYLVSLGFERSISEPTLYVKKEQAETQLIVSLYVDDLLVTGGDRIILADFKAKMKYMFEMSDLGQMTYFLGMEVL--QTQSGIFLGQKTFAVKILSKFFMENCKPTSTPMAVGMKLSSQGDY--EQASESAYRSLVGCLLYLTA-TRPDIMFAVSMLSSAQSSKKQSI-----VAQSTAEAEYVATVNAVNQAIWLRKILVDLNLHQREATEIFCDNKSAVAIAKNLVFHGRTKHFSIKLHVVRKMEQAREVELIHCNSEKQIADIFIKAFNVSRF 412          
BLAST of mRNA_H-akashiwo_Contig934.2.1 vs. uniprot
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RPT4_CAJCA)

HSP 1 Score: 181 bits (459), Expect = 1.220e-47
Identity = 110/363 (30.30%), Postives = 179/363 (49.31%), Query Frame = 1
Query:   16 NKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYVRREGGNELMVAIYVDDLVVSGSSPALVSDFKQSLASKYDLTDQWELTQILGIKVVWDKRDKCFYLSQISFIKDALSMFGLDYLPACATPMDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAE---------------------------------------------------------------LTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFRVSYHLAKEQVSLGTIRMFFTKTHDQVADIFTKALNAENF 915
            +KV +L KALYGL+Q+PR W + +  +   + F +  +E  LY++ +G + L+V +YVDDL+ +G++P++  +FK+ +  ++++TD   +   LGI+V   + ++  +++Q S+ KD L  F LD      TPM+  + L+     + E  D  LY+S+VG+L ++   TRP++ + V  + R    P   H + A+                                                               +T ST EAEY+A  S V   +WLR+LL +L  PQ EPT +  DN + I  A + V   +++H    YH  +E +S   ++M + KTHDQVADIFTK L  E F
Sbjct:  972 DKVLRLKKALYGLKQAPRAWNVRIDKYFKEVNFIKCPYEHALYIKAQGKDILIVCLYVDDLIFTGNNPSMFEEFKKDMTKEFEMTDMGLMAYYLGIEV--KQGNEGIFITQESYAKDLLKKFKLDDANPVGTPMECGIKLSKDE--EGEKVDPTLYKSLVGSLRYLT-CTRPDILYAVGVVSRYMEAPTTTHLKTAKRILRYIKGTTSFGLYYSNSNDYKLVGYSDSDWSGDMDDRKSTSGFVFYMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQVEPTKIYVDNKSAIALAKNPVFHDRSKHIHTRYHYIRECISNKDVQMEYVKTHDQVADIFTKPLKKEVF 1329          
BLAST of mRNA_H-akashiwo_Contig934.2.1 vs. uniprot
Match: Q2QRU2_ORYSJ (Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2QRU2_ORYSJ)

HSP 1 Score: 181 bits (458), Expect = 1.680e-47
Identity = 103/310 (33.23%), Postives = 169/310 (54.52%), Query Frame = 1
Query:   10 YPNKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYVRREGGNELMVAIYVDDLVVSGSSPALVSDFKQSLASKYDLTDQWELTQILGIKVVWDKRDKCFYLSQISFIKDALSMFGLDYLPACATPMDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEAAE--------LTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFRVSYHLAKEQVSLGTIRMFFTKTHDQVADIFTKALNAENF 915
            +PN V+KL+KALYGL+Q+PR WY  L + LL+  F     +  L+V + G N+L V IYVDD++   S+ A+V DF +++  +++++   EL+  LG+++   +  +  ++ Q  + KD L  F ++     +TP+  T  L P      E  D  +YRSM+G+L ++   +RP++ F V    R Q +P A H +A +        +  ST E+EY+A  S    I+WL   L D G    E  P+  DN++ I  A + V   + +H  + +H  ++ V  G + + F  T  Q+ADIFTK L++  F
Sbjct: 1089 FPNHVFKLSKALYGLKQTPRAWYDRLKNFLLAKLFTMGNVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHAVVVDFAETMRREFEMSMMGELSYFLGLQI--KQTPQGTFVHQTKYTKDLLRRFNMENCKPISTPIGSTAVLDPDED--GEAVDQKVYRSMIGSLLYLTA-SRPDIQFAVCLCARFQASPRASHRQAVKRIMRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKDYGLTF-EKVPLFYDNTSAINIAKNPVQHSRTKHIDIRFHFLRDHVEKGDVELQFLDTKLQIADIFTKPLDSNRF 1392          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig934.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK1.100e-16370.00Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK4.320e-12486.43Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y3B6_HETAK7.540e-6062.03Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A2N9HE67_FAGSY1.040e-5033.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5H2XV49_PRUDU3.290e-4934.95Transposable element protein (Fragment) n=1 Tax=Pr... [more]
UPI00098DD4492.210e-4829.75uncharacterized protein LOC109818890 n=1 Tax=Cajan... [more]
A0A8J5Z1M9_9ROSI4.550e-4836.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1U8KW07_GOSHI1.160e-4732.78uncharacterized protein LOC107921232 n=1 Tax=Gossy... [more]
A0A151RPT4_CAJCA1.220e-4730.30Retrovirus-related Pol polyprotein from transposon... [more]
Q2QRU2_ORYSJ1.680e-4733.23Retrotransposon protein, putative, unclassified n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig934contigH-akashiwo_Contig934:31737..32834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra85518
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size915
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.03e-44
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales
DescriptionGAG-pre-integrase domain
Cds size915
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388049.3641818-CDS-H-akashiwo_Contig934:31736..323431681388049.3641818-CDS-H-akashiwo_Contig934:31736..32343Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig934 31737..32343 +
1681388049.386115-CDS-H-akashiwo_Contig934:32526..328341681388049.386115-CDS-H-akashiwo_Contig934:32526..32834Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig934 32527..32834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig934.2.1prot_H-akashiwo_Contig934.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig934 31737..32834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig934.2.1

>prot_H-akashiwo_Contig934.2.1 ID=prot_H-akashiwo_Contig934.2.1|Name=mRNA_H-akashiwo_Contig934.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=305bp
TSTYPNKVWKLNKALYGLRQSPRIWYMELHDHLLSLGFQRSGHESCLYVR
REGGNELMVAIYVDDLVVSGSSPALVSDFKQSLASKYDLTDQWELTQILG
IKVVWDKRDKCFYLSQISFIKDALSMFGLDYLPACATPMDHTVDLTPTPG
FKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQCNPEAKHFEA
AELTTSTVEAEYLALRSSVKDIMWLRHLLADLGCPQQEPTPVVEDNSACI
EWANDLVVSKKNRHFRVSYHLAKEQVSLGTIRMFFTKTHDQVADIFTKAL
NAENF
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mRNA from alignment at H-akashiwo_Contig934:31737..32834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig934.2.1 ID=mRNA_H-akashiwo_Contig934.2.1|Name=mRNA_H-akashiwo_Contig934.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1098bp|location=Sequence derived from alignment at H-akashiwo_Contig934:31737..32834+ (Heterosigma akashiwo CCMP452)
ACGTCTACGTATCCCAATAAGGTTTGGAAGCTGAACAAGGCGCTGTACGG TTTACGCCAGAGTCCACGCATCTGGTACATGGAATTGCATGATCATCTCT TGTCTTTGGGTTTCCAGCGTAGTGGGCATGAATCATGCTTGTACGTCCGC CGCGAAGGGGGCAATGAGCTGATGGTGGCCATATACGTTGATGATCTTGT CGTTAGTGGCAGCTCTCCCGCTCTTGTCTCTGATTTCAAACAGTCTCTTG CATCAAAGTACGATCTCACCGATCAGTGGGAGCTGACTCAAATCCTCGGT ATCAAGGTTGTTTGGGACAAGCGGGACAAGTGCTTCTATCTCTCCCAAAT CTCTTTTATTAAGGACGCTCTCTCCATGTTCGGACTCGATTACCTGCCTG CGTGCGCGACTCCAATGGATCACACCGTTGATCTTACGCCTACCCCTGGC TTCAAGGCTGAGCTCTCCGACGCAAATCTGTATAGGTCCATGGTTGGCAC GCTAGCCTGGGTTGCAAACTGGACGAGGCCGGAGCTGGCTTTTACAGTTC ATAAGCTTCAACGCACTCAGTGTAACCCGGAGGCCAAGCATTTCGAGGCG GCCGAGCGTGCATTTCGTTATCTAAAGGGCACTCAGTCTGAGTCGTTACG GCTGGGTGGCGATCTGGTGCTGCGTGCGTTCTCTGATTCGGATTTTTGCG CTGACCGTATTGATGGTAAGTCTGTGACGGGATACATCATTTTTCTGGGT GATGCGCCTATCATTTAGTCCTCCAGGCTTCAAGGGGCAGTCACTACCTC CACAGTGGAGGCAGAGTATCTCGCTCTTCGGTCATCTGTCAAAGACATCA TGTGGCTCCGACATCTTCTTGCTGATCTTGGGTGTCCCCAGCAGGAGCCT ACTCCTGTAGTGGAGGACAATAGTGCCTGCATTGAATGGGCAAATGACTT GGTAGTCTCCAAGAAGAATAGGCATTTCCGTGTATCTTATCATCTTGCTA AGGAGCAGGTGAGCCTTGGAACTATCAGGATGTTCTTCACTAAGACTCAT GACCAAGTGGCTGATATTTTTACCAAGGCTCTCAATGCAGAGAATTTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig934:31737..32834+

>mRNA_H-akashiwo_Contig934.2.1 ID=mRNA_H-akashiwo_Contig934.2.1|Name=mRNA_H-akashiwo_Contig934.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=915bp|location=Sequence derived from alignment at H-akashiwo_Contig934:31737..32834+ (Heterosigma akashiwo CCMP452)
ACGTCTACGTATCCCAATAAGGTTTGGAAGCTGAACAAGGCGCTGTACGG
TTTACGCCAGAGTCCACGCATCTGGTACATGGAATTGCATGATCATCTCT
TGTCTTTGGGTTTCCAGCGTAGTGGGCATGAATCATGCTTGTACGTCCGC
CGCGAAGGGGGCAATGAGCTGATGGTGGCCATATACGTTGATGATCTTGT
CGTTAGTGGCAGCTCTCCCGCTCTTGTCTCTGATTTCAAACAGTCTCTTG
CATCAAAGTACGATCTCACCGATCAGTGGGAGCTGACTCAAATCCTCGGT
ATCAAGGTTGTTTGGGACAAGCGGGACAAGTGCTTCTATCTCTCCCAAAT
CTCTTTTATTAAGGACGCTCTCTCCATGTTCGGACTCGATTACCTGCCTG
CGTGCGCGACTCCAATGGATCACACCGTTGATCTTACGCCTACCCCTGGC
TTCAAGGCTGAGCTCTCCGACGCAAATCTGTATAGGTCCATGGTTGGCAC
GCTAGCCTGGGTTGCAAACTGGACGAGGCCGGAGCTGGCTTTTACAGTTC
ATAAGCTTCAACGCACTCAGTGTAACCCGGAGGCCAAGCATTTCGAGGCG
GCCGAGCTCACTACCTCCACAGTGGAGGCAGAGTATCTCGCTCTTCGGTC
ATCTGTCAAAGACATCATGTGGCTCCGACATCTTCTTGCTGATCTTGGGT
GTCCCCAGCAGGAGCCTACTCCTGTAGTGGAGGACAATAGTGCCTGCATT
GAATGGGCAAATGACTTGGTAGTCTCCAAGAAGAATAGGCATTTCCGTGT
ATCTTATCATCTTGCTAAGGAGCAGGTGAGCCTTGGAACTATCAGGATGT
TCTTCACTAAGACTCATGACCAAGTGGCTGATATTTTTACCAAGGCTCTC
AATGCAGAGAATTTC
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