mRNA_H-akashiwo_Contig932.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig932.4.1
Unique NamemRNA_H-akashiwo_Contig932.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig932.4.1 vs. uniprot
Match: A0A2R5GQ88_9STRA (Growth arrest-specific protein 8-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQ88_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 5.190e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 2 
Query:    2 DEKRMLEVAQENKRMSEPLKKAEQDVQXXXXXXXXXXXXXXELKATAGKVLVLEDRLRALRWEHELLGQKAGMVAKERQELYD 250
            DEK M E+AQENKRMSEPLK+A QDV+               L  T   + V++D+L+AL+WE+E+LGQ+  M++ ER+ LYD
Sbjct:  262 DEKLMFEIAQENKRMSEPLKQALQDVERLRGSLEEYTEIKARLSKTKVNLGVVQDQLKALQWENEVLGQRFEMISSERKNLYD 344
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BLAST of mRNA_H-akashiwo_Contig932.4.1 vs. uniprot
Match: A0A6H5JDM4_9PHAE (GAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM4_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.130e-12
Identity = 53/83 (63.86%), Postives = 65/83 (78.31%), Query Frame = 2 
Query:    2 DEKRMLEVAQENKRMSEPLKKAEQDVQXXXXXXXXXXXXXXELKATAGKVLVLEDRLRALRWEHELLGQKAGMVAKERQELYD 250
            DEK M E+AQENK+MSEPL+KA QD  XXXXXXXXXXXXXX    T  +VLV+E+RLR L WE E+LGQ+  +V++ER +L D
Sbjct:  218 DEKLMYEIAQENKKMSEPLRKARQDXXXXXXXXXXXXXXXXXXXXTKARVLVMEERLRDLHWEDEVLGQRFAIVSRERDQLRD 300
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BLAST of mRNA_H-akashiwo_Contig932.4.1 vs. uniprot
Match: A0A485KX97_9STRA (Aste57867_12322 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KX97_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 8.750e-12
Identity = 40/82 (48.78%), Postives = 48/82 (58.54%), Query Frame = 2 
Query:    2 DEKRMLEVAQENKRMSEPLKKAEQDVQXXXXXXXXXXXXXXELKATAGKVLVLEDRLRALRWEHELLGQKAGMVAKERQELY 247
            DEK M E++QENKRMSEPLKKA QDV+               LK    ++LVLED L  L WEHE+L Q+   V KE   L+
Sbjct:  271 DEKLMFEISQENKRMSEPLKKALQDVERLRKSIKSYDEDKVALKTAKAELLVLEDELATLSWEHEVLTQRHAQVQKEHNTLH 352
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BLAST of mRNA_H-akashiwo_Contig932.4.1 vs. uniprot
Match: A0A7S4UVC6_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UVC6_GUITH)

HSP 1 Score: 68.6 bits (166), Expect = 1.210e-11
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 2 
Query:    2 DEKRMLEVAQENKRMSEPLKKAEQDVQXXXXXXXXXXXXXXELKATAGKVLVLEDRLRALRWEHELLGQKAGMVAKERQELYD 250
            +EK M E+AQENKR+SEPL +A ++V+               L+ T  ++LVLED+ + L WEHE+L Q+  +V KER ELYD
Sbjct:  348 NEKLMFEIAQENKRLSEPLTRALKEVELLRHELSNYDKDKLSLQNTKARLLVLEDQNKQLSWEHEVLQQRFSLVQKERDELYD 430
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BLAST of mRNA_H-akashiwo_Contig932.4.1 vs. uniprot
Match: A0A024U3K1_9STRA (GAS domain-containing protein n=12 Tax=Aphanomyces TaxID=100860 RepID=A0A024U3K1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.640e-11
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 2 
Query:    2 DEKRMLEVAQENKRMSEPLKKAEQDVQXXXXXXXXXXXXXXELKATAGKVLVLEDRLRALRWEHELLGQKAGMVAKERQELY 247
            DEK M E++QENKRMSEPLKKA QDV+               LKA   ++LVLED+L +L WEHE+L Q+   V  E   L+
Sbjct:  271 DEKLMFEISQENKRMSEPLKKALQDVERLRKSIKSYDEDKVALKAAKAELLVLEDQLGSLSWEHEVLTQRFAQVQNEYNTLH 352
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BLAST of mRNA_H-akashiwo_Contig932.4.1 vs. uniprot
Match: A0A7S1EKT5_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S1EKT5_HEMAN)

HSP 1 Score: 68.2 bits (165), Expect = 1.650e-11
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 2 
Query:    2 DEKRMLEVAQENKRMSEPLKKAEQDVQXXXXXXXXXXXXXXELKATAGKVLVLEDRLRALRWEHELLGQKAGMVAKERQELYD 250
            +EK M E+AQENKR+SEPL +A ++V+               L+ T  ++LVLED+ + L WEHE+L Q+  MV KER ELY+
Sbjct:  342 NEKLMFEIAQENKRLSEPLTRALKEVELLRHELSNYDKDKLSLQNTKARLLVLEDQNKQLSWEHEVLQQRFAMVQKERDELYE 424
[Close]
BLAST of mRNA_H-akashiwo_Contig932.4.1 vs. uniprot
Match: D7FRV4_ECTSI (Component of dynein regulatory complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV4_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 7.760e-11
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 2 
Query:    2 DEKRMLEVAQENKRMSEPLKKAEQDVQXXXXXXXXXXXXXXELKATAGKVLVLEDRLRALRWEHELLGQKAGMVAKERQELYD 250
            DEK M E+AQENK+MSEPL+KA Q   XXXXXXXXXXXXXX    T  +VL++E+RLR L WE E+LGQ+  +V++ER +L D
Sbjct:  241 DEKLMYEIAQENKKMSEPLRKARQXXXXXXXXXXXXXXXXXXXXLTKARVLIMEERLRDLHWEDEVLGQRFAIVSRERDQLRD 323
[Close]
BLAST of mRNA_H-akashiwo_Contig932.4.1 vs. uniprot
Match: A0A7S1C841_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C841_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.320e-10
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 2 
Query:    2 DEKRMLEVAQENKRMSEPLKKAEQDVQXXXXXXXXXXXXXXELKATAGKVLVLEDRLRALRWEHELLGQKAGMVAKERQELYD 250
            DEK M E+AQENKR+ EPLK+A  DV+               LK    K+LV  +RLRAL+WEHE+L Q+      ER  LY+
Sbjct:  270 DEKLMFEIAQENKRIGEPLKRAMADVKRLQKARDEYRADVETLKKVKAKLLVGGERLRALQWEHEVLQQRTARAEAERDRLYE 352
[Close]
BLAST of mRNA_H-akashiwo_Contig932.4.1 vs. uniprot
Match: A0A5D6XXX7_9STRA (GAS domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXX7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.450e-10
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:    2 DEKRMLEVAQENKRMSEPLKKAEQDVQXXXXXXXXXXXXXXELKATAGKVLVLEDRLRALRWEHELLGQKAGMVAKERQELYD 250
            DEK M E+AQENKRMSEPLK+A QDV+              EL+    ++LVLE++  AL WE E+L Q+   V +E  EL D
Sbjct:  271 DEKLMFEIAQENKRMSEPLKRALQDVEKLRTSITVYHAAKLELRGAKAQLLVLEEQHAALAWEFEVLQQRFAQVQREHGELSD 353
[Close]
BLAST of mRNA_H-akashiwo_Contig932.4.1 vs. uniprot
Match: A0A0P1ALP8_PLAHL (Component of dynein regulatory complex n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ALP8_PLAHL)

HSP 1 Score: 65.1 bits (157), Expect = 2.000e-10
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 2 
Query:    2 DEKRMLEVAQENKRMSEPLKKAEQDVQXXXXXXXXXXXXXXELKATAGKVLVLEDRLRALRWEHELLGQKAGMVAKERQEL 244
            DEK M E++QENKRMSEPLK+A  DV+              EL++   ++LVLE +   L WE E+L Q+AG VA E QEL
Sbjct:  327 DEKLMYEISQENKRMSEPLKRALLDVEKLRKNICIYQEEKLELRSAKTQLLVLEQQYATLSWEFEVLQQRAGQVAHELQEL 407
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig932.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R5GQ88_9STRA5.190e-1348.19Growth arrest-specific protein 8-like n=1 Tax=Hond... [more]
A0A6H5JDM4_9PHAE5.130e-1263.86GAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A485KX97_9STRA8.750e-1248.78Aste57867_12322 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S4UVC6_GUITH1.210e-1145.78Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A024U3K1_9STRA1.640e-1148.78GAS domain-containing protein n=12 Tax=Aphanomyces... [more]
A0A7S1EKT5_HEMAN1.650e-1145.78Hypothetical protein n=3 Tax=Hemiselmis TaxID=7792... [more]
D7FRV4_ECTSI7.760e-1161.45Component of dynein regulatory complex n=1 Tax=Ect... [more]
A0A7S1C841_9STRA1.320e-1045.78Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5D6XXX7_9STRA1.450e-1046.99GAS domain-containing protein n=1 Tax=Pythium bras... [more]
A0A0P1ALP8_PLAHL2.000e-1048.15Component of dynein regulatory complex n=1 Tax=Pla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig932contigH-akashiwo_Contig932:386410..388549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size253
Hectar predicted targeting categoryother localisation
Exons2
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388048.9375029-CDS-H-akashiwo_Contig932:386409..3865031681388048.9375029-CDS-H-akashiwo_Contig932:386409..386503Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig932 386410..386503 +
1681388048.9495192-CDS-H-akashiwo_Contig932:388390..3885481681388048.9495192-CDS-H-akashiwo_Contig932:388390..388548Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig932 388391..388548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig932.4.1prot_H-akashiwo_Contig932.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig932 386410..388548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig932.4.1

>prot_H-akashiwo_Contig932.4.1 ID=prot_H-akashiwo_Contig932.4.1|Name=mRNA_H-akashiwo_Contig932.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=84bp
RREAHAGGGAGEQAHERAAEEGRAGRATAHPGAGGIHEGEGGAEGHGGQG
AGAGGPAAGAALGARAPRPEGGHGGQGAPGAVRP
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mRNA from alignment at H-akashiwo_Contig932:386410..388549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig932.4.1 ID=mRNA_H-akashiwo_Contig932.4.1|Name=mRNA_H-akashiwo_Contig932.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2140bp|location=Sequence derived from alignment at H-akashiwo_Contig932:386410..388549+ (Heterosigma akashiwo CCMP452)
CGACGAGAAGCGCATGCTGGAGGTGGCGCAGGAGAACAAGCGCATGAGCG
AGCCGCTGAAGAAGGCCGAGCAGGACGTGCAACGGCTCACCCAGGTATAA
CCCCCTGTCCCCACGCTCCCTTTTCTTCCCTTCGCCGGGGGACGACCGTG
CCCCCCTTCTTCCCTCTCCCCCCTCCTCCCTTGCCGGGCTGCGCCTGGGC
AGGACCGGTGGGGGGGGGGCTCGCTTTTCCTTCTTCGGGTGGGCTGCGCG
CGGTTCACGAGGGTGCGAAGATTCGAGTTTATAACACCTGGTGGTAGTGG
AATCGATCCTTTCTTTTTATCCTGTGCTCAGAAGCGGTTGAGAGGAGGAG
GGGTAGTGGAAGCGATCCTTTCTTTCTCCTGTGATCAGAAGCAGTTGAGA
GGAGGAGGGGATAATGTGGATGGATTTTATGATATACATAGTACAAAATC
AATGCATATTTCTTCTAGCTTCAGTAATTCAGGCTTCTTGTTGATAATTA
CTTAACAAAAAATCCTACTGAAGGCCATATAAAGTCGGAACAGATAGGCA
GGCCTCCTGTGATTACAATTTTGTTGCCGCCATCATCCTCATTGAAGCAG
GTAGAGAGTATTTTTTAATTGAGTTTGTGGCGCCAGAATTGGATTCATGA
GAATAATCAATGACAGATTGATAAGGACACTTTTTATAATCCAACAGAAC
TTCATAAGAACTAAATATTTCGATCGAGAGTCCGATCTTCTTCAGTATTC
CCAGCCGCTCTGGATAATTCAGCTGGAAAGTATACCAATGAAAGCGGTTC
TCTGTTTAGACCCAACACCCTGCAATGAAATTCTTCTTACAACATCATCA
CCACACACCCTGCTGCTCGCTCGTGCTCACAACGACTAGAGGAGGAGGAT
GCCTCCTCCCAAAATATTCAACGCAAATTAGGCTAAGATAAAAAGAAGGA
AAGAAAATCGACAAAAACCCGCCAAAATGGTAGGATGACAACAATAACGT
CAAGGAGAAAAGTAATGTCAACAGTAGCATCAAGAAGAAGACAGATGGAG
AAGAAGTAATTATCAATTCACGACGAGAAGAAGAAAAACAGCTAATCGCT
AACGACAGTAGGTCTACTTTATCAATAACAACGACTACAACAACAATAAC
AAGGAAGAGGCTGGCTGCTCATTTTTAGTTCTTATGAAGTTCTGTTGGAT
TATAAAAAGTGTCCTTATCAATCTGTCATTGATTAATTTTTTATTGTTAG
AGAAGTGACTATACTACAATCCCTACTCCATGGCAAGGATGCTAACACTT
TGGCTATAGGTGGGAATATGGAGCCCTGCGGTATAGCTTTCCTCCAGTAA
CAACAAAGAAATAATGAAGCACTCTAGTTTTGATGACTTCTTTGGCTGCT
TCTTCCTGTTGTTGTCATGGTAAAAATCAAACTGCCAGCAGATTTGAACA
AATAGGATTCATTCTTTGCTGAATCTTGCTATTTGCAAATCAAATTCACA
GACCATTAGTATCTTCTCCCCCAAGTGGTGTAGTTGAGCTTTCTTTTGCT
TCAACTTCCCCGAAATTTCGCTCCGAGACTGCTTTCTTCAAGGGATGAGA
GATGAAACACATAACTTATCTCCAAAATTTTAGCTTGCCATTTTTGCTAT
TTTGATCACAGAGTTATGGCAGAACCTGAGCCGAAGAGCGTAGGATTGTC
GAGGTACACCACCATAACTCTGGGATAACAATGGGAAAATTGGCAAGCTA
AATTTTGGAGAGAGAAGTTGTGTGGCAGGTCTTCGTATTATACTGGGAAG
TGCTGGGGAGGAGAAGCCCCACGCCGAGGGAGAAGCCCCGGCGCCGTTTT
TCCCTCTGCCCGCGCACTGCCCCTCAGGCAACGGGCACCCCACTCGTCCG
ACACACCGTTCCGCGACGCCGCCCCGCCCACTAAGGACGCCCGGGCGGGC
GGCGGGCGGGCGGCGGGCGGCGGCGGGGCAGGAGCTGGAGGAATACACGA
AGGAGAAGGAGGAGCTGAAGGCCACGGCGGGCAAGGTGCTGGTGCTGGAG
GACCGGCTGCGGGCGCTGCGCTGGGAGCACGAGCTCCTCGGCCAGAAGGC
GGGCATGGTGGCCAAGGAGCGCCAGGAGCTGTACGACCGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig932:386410..388549+

>mRNA_H-akashiwo_Contig932.4.1 ID=mRNA_H-akashiwo_Contig932.4.1|Name=mRNA_H-akashiwo_Contig932.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=252bp|location=Sequence derived from alignment at H-akashiwo_Contig932:386410..388549+ (Heterosigma akashiwo CCMP452)
CGACGAGAAGCGCATGCTGGAGGTGGCGCAGGAGAACAAGCGCATGAGCG
AGCCGCTGAAGAAGGCCGAGCAGGACGTGCAACGGCTCACCCAGGAGCTG
GAGGAATACACGAAGGAGAAGGAGGAGCTGAAGGCCACGGCGGGCAAGGT
GCTGGTGCTGGAGGACCGGCTGCGGGCGCTGCGCTGGGAGCACGAGCTCC
TCGGCCAGAAGGCGGGCATGGTGGCCAAGGAGCGCCAGGAGCTGTACGAC
CG
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