mRNA_H-akashiwo_Contig931.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig931.8.1
Unique NamemRNA_H-akashiwo_Contig931.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig931.8.1 vs. uniprot
Match: A0A7S3XR88_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR88_HETAK)

HSP 1 Score: 72.0 bits (175), Expect = 3.420e-13
Identity = 45/51 (88.24%), Postives = 45/51 (88.24%), Query Frame = -2 
Query:   24 ATXXXXXXXXLGSRRGGRSSQATPRPVPGAAGAAASPVTAGSAPLAGSSAS 176
            AT     XX LGSRRGGRSSQATPRPVPGAAGAAASPVTAGSAPLAGSSAS
Sbjct:  101 ATTSRRGXXGLGSRRGGRSSQATPRPVPGAAGAAASPVTAGSAPLAGSSAS 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig931.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XR88_HETAK3.420e-1388.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig931contigH-akashiwo_Contig931:381142..381528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size389
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388048.4861424-CDS-H-akashiwo_Contig931:381141..3815281681388048.4861424-CDS-H-akashiwo_Contig931:381141..381528Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig931 381142..381528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig931.8.1prot_H-akashiwo_Contig931.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig931 381142..381528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig931.8.1

>prot_H-akashiwo_Contig931.8.1 ID=prot_H-akashiwo_Contig931.8.1|Name=mRNA_H-akashiwo_Contig931.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=129bp
MCGAQTVLLAEEPARGALPAVTGEAAAPAAPGTGRGVAWEDRPPRRLPRP
PPPRRDVVASVWPGGGNKRCLAAEWALVCPYRLAGGGMITLLAGFLHKLY
MERRSVVQVVTSFLFCTLSSVVLFCFFLG
back to top

mRNA from alignment at H-akashiwo_Contig931:381142..381528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig931.8.1 ID=mRNA_H-akashiwo_Contig931.8.1|Name=mRNA_H-akashiwo_Contig931.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=387bp|location=Sequence derived from alignment at H-akashiwo_Contig931:381142..381528+ (Heterosigma akashiwo CCMP452)
ATGTGCGGTGCTCAGACTGTGCTGCTGGCGGAAGAGCCGGCCAGGGGGGC
GCTGCCGGCTGTGACGGGCGAGGCGGCAGCGCCGGCGGCACCGGGCACTG
GGCGTGGGGTGGCCTGGGAGGACCGGCCGCCGCGGCGGCTCCCCAGGCCG
CCGCCGCCCCGGCGGGACGTCGTGGCGTCTGTGTGGCCGGGGGGAGGGAA
CAAGCGCTGCTTGGCTGCTGAGTGGGCTCTGGTTTGTCCATATAGATTGG
CAGGTGGGGGAATGATAACCTTGCTAGCTGGTTTTCTACACAAGCTATAT
ATGGAGAGAAGAAGCGTAGTGCAAGTTGTTACAAGTTTTTTGTTCTGTAC
ACTATCTAGCGTTGTGCTTTTTTGTTTTTttttgggg
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig931:381142..381528+

>mRNA_H-akashiwo_Contig931.8.1 ID=mRNA_H-akashiwo_Contig931.8.1|Name=mRNA_H-akashiwo_Contig931.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=387bp|location=Sequence derived from alignment at H-akashiwo_Contig931:381142..381528+ (Heterosigma akashiwo CCMP452)
ATGTGCGGTGCTCAGACTGTGCTGCTGGCGGAAGAGCCGGCCAGGGGGGC
GCTGCCGGCTGTGACGGGCGAGGCGGCAGCGCCGGCGGCACCGGGCACTG
GGCGTGGGGTGGCCTGGGAGGACCGGCCGCCGCGGCGGCTCCCCAGGCCG
CCGCCGCCCCGGCGGGACGTCGTGGCGTCTGTGTGGCCGGGGGGAGGGAA
CAAGCGCTGCTTGGCTGCTGAGTGGGCTCTGGTTTGTCCATATAGATTGG
CAGGTGGGGGAATGATAACCTTGCTAGCTGGTTTTCTACACAAGCTATAT
ATGGAGAGAAGAAGCGTAGTGCAAGTTGTTACAAGTTTTTTGTTCTGTAC
ACTATCTAGCGTTGTGCTTTTTTGTTTTTttttgggg
back to top