mRNA_H-akashiwo_Contig931.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig931.6.1
Unique NamemRNA_H-akashiwo_Contig931.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig931.6.1 vs. uniprot
Match: A0A7S3YKD6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YKD6_HETAK)

HSP 1 Score: 151 bits (381), Expect = 1.950e-45
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 CYAGKIDEVERLITSEKVPVHDVTDHRGRHPLPGAVLSGVQDLVDYLLQHQVDVNKGQEGEGTPLYLACRE 213
            CYAGKIDEVERLITSEKVPVHDVTDHRGRHPLPGAVLSGVQDLVDYLLQHQVDVNKGQEGEGTPLYLACR+
Sbjct:   15 CYAGKIDEVERLITSEKVPVHDVTDHRGRHPLPGAVLSGVQDLVDYLLQHQVDVNKGQEGEGTPLYLACRD 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig931.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YKD6_HETAK1.950e-4598.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig931contigH-akashiwo_Contig931:361356..361873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog9597.XP_008948932.1
Preferred nameTNKS2
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5,PARP,SAM_2
Model size216
Max annot lvl33208|Metazoa
KEGG koko:K10799
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0000228,GO:0000242,GO:0000723,GO:0000781,GO:0000784,GO:0003674,GO:0003824,GO:0003950,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006464,GO:0006471,GO:0006725,GO:0006807,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0012505,GO:0015630,GO:0016043,GO:0016567,GO:0016740,GO:0016757,GO:0016763,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030111,GO:0030162,GO:0030177,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032210,GO:0032212,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0034502,GO:0034613,GO:0034641,GO:0035264,GO:0036211,GO:0040007,GO:0040008,GO:0040014,GO:0042176,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043412,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044454,GO:0044464,GO:0045732,GO:0045862,GO:0045934,GO:0045935,GO:0046483,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048638,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051239,GO:0051246,GO:0051247,GO:0051276,GO:0051641,GO:0060249,GO:0060255,GO:0060828,GO:0065007,GO:0065008,GO:0070013,GO:0070198,GO:0070212,GO:0070213,GO:0070647,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090263,GO:0090304,GO:0090364,GO:0097110,GO:0098687,GO:1901360,GO:1901564,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904353,GO:1904355,GO:1904356,GO:1904357,GO:1904358,GO:2000058,GO:2000060,GO:2000112,GO:2000278,GO:2000573,GO:2001251,GO:2001252
Exons3
Evalue5.65e-06
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota,38EUY@33154|Opisthokonta,3BAA9@33208|Metazoa,3CRYK@33213|Bilateria,487T5@7711|Chordata,48VVI@7742|Vertebrata,3J4EB@40674|Mammalia,35IGA@314146|Euarchontoglires,4MGAQ@9443|Primates,4MYIG@9604|Hominidae
EC2.4.2.30
DescriptionPoly(ADP-ribose) polymerase catalytic domain
Cds size213
COG categoryM
BRITEko00000,ko01000,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388048.435523-CDS-H-akashiwo_Contig931:361356..3614151681388048.435523-CDS-H-akashiwo_Contig931:361356..361415Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig931 361357..361415 -
1681388048.4486291-CDS-H-akashiwo_Contig931:361590..3616921681388048.4486291-CDS-H-akashiwo_Contig931:361590..361692Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig931 361591..361692 -
1681388048.458862-CDS-H-akashiwo_Contig931:361821..3618731681388048.458862-CDS-H-akashiwo_Contig931:361821..361873Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig931 361822..361873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig931.6.1prot_H-akashiwo_Contig931.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig931 361357..361873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig931.6.1

>prot_H-akashiwo_Contig931.6.1 ID=prot_H-akashiwo_Contig931.6.1|Name=mRNA_H-akashiwo_Contig931.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=71bp
CYAGKIDEVERLITSEKVPVHDVTDHRGRHPLPGAVLSGVQDLVDYLLQH
QVDVNKGQEGEGTPLYLACRE
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mRNA from alignment at H-akashiwo_Contig931:361356..361873-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig931.6.1 ID=mRNA_H-akashiwo_Contig931.6.1|Name=mRNA_H-akashiwo_Contig931.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=518bp|location=Sequence derived from alignment at H-akashiwo_Contig931:361356..361873- (Heterosigma akashiwo CCMP452)
TGCTATGCTGGTAAAATCGATGAAGTTGAACGTCTAATCACTAGCGAGAA
AGGTATGTTCAGAAATTTGAGAAGTAGTGTGTCATCTGGGCCGAGCATCC
GTTTTTTCTTGCTACTTCTTTTACCCTACCTCCTTTTTTCCAAAAACATT
GTACCTCCTGTTTTGGTTTGTTTCCTCTCAGTCCCTGTCCATGACGTGAC
CGATCACCGTGGGCGTCACCCCCTTCCTGGTGCTGTGTTGAGTGGAGTGC
AAGACCTAGTTGATTACCTTCTGCAACATCAAGGTGCGGGCCTACGAGTG
CGTATAAAAAATGACTGGCATCCGGCATTGTTAATAGTAAACAGTAATAA
TAATAATAATAATTGATGTTCTAAGGACTGTAGCTGGTGTAAGGCCGTTC
TTCTTGCTTTCTACTCTTTGTCACCTTGACTACATCCCCCGGTCACCGGT
CACTGCAGTGGATGTGAACAAGGGGCAGGAGGGCGAGGGCACACCCCTGT
ACCTTGCCTGCCGGGAAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig931:361356..361873-

>mRNA_H-akashiwo_Contig931.6.1 ID=mRNA_H-akashiwo_Contig931.6.1|Name=mRNA_H-akashiwo_Contig931.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=213bp|location=Sequence derived from alignment at H-akashiwo_Contig931:361356..361873- (Heterosigma akashiwo CCMP452)
TGCTATGCTGGTAAAATCGATGAAGTTGAACGTCTAATCACTAGCGAGAA
AGTCCCTGTCCATGACGTGACCGATCACCGTGGGCGTCACCCCCTTCCTG
GTGCTGTGTTGAGTGGAGTGCAAGACCTAGTTGATTACCTTCTGCAACAT
CAAGTGGATGTGAACAAGGGGCAGGAGGGCGAGGGCACACCCCTGTACCT
TGCCTGCCGGGAA
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