mRNA_H-akashiwo_Contig93.59.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.59.1
Unique NamemRNA_H-akashiwo_Contig93.59.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig93.59.1 vs. uniprot
Match: A0A7S3UT08_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UT08_HETAK)

HSP 1 Score: 106 bits (264), Expect = 1.320e-27
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 AGGPIHGDPKPEVQFVDDHEDDMRPVLLPFSSTTDIDIEEHDTIFANYD 147
            AGGPIHGDPKPEVQFVDDHEDDMRPVLLPFSSTTDIDIEEHDTIFANYD
Sbjct:   76 AGGPIHGDPKPEVQFVDDHEDDMRPVLLPFSSTTDIDIEEHDTIFANYD 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UT08_HETAK1.320e-27100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:1677148..1684280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size148
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388046.7430477-CDS-H-akashiwo_Contig93:1677148..16772531681388046.7430477-CDS-H-akashiwo_Contig93:1677148..1677253Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 1677149..1677253 -
1681388046.7529652-CDS-H-akashiwo_Contig93:1684238..16842801681388046.7529652-CDS-H-akashiwo_Contig93:1684238..1684280Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 1684239..1684280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.59.1prot_H-akashiwo_Contig93.59.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 1677149..1684280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.59.1

>prot_H-akashiwo_Contig93.59.1 ID=prot_H-akashiwo_Contig93.59.1|Name=mRNA_H-akashiwo_Contig93.59.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=49bp
AGGPIHGDPKPEVQFVDDHEDDMRPVLLPFSSTTDIDIEEHDTIFANYD
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mRNA from alignment at H-akashiwo_Contig93:1677148..1684280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.59.1 ID=mRNA_H-akashiwo_Contig93.59.1|Name=mRNA_H-akashiwo_Contig93.59.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7133bp|location=Sequence derived from alignment at H-akashiwo_Contig93:1677148..1684280- (Heterosigma akashiwo CCMP452)
GCGGGAGGGCCTATACACGGGGACCCCAAGCCCGAGGTCCAGGTGAGGGC
CTACACATGATAATTCATATAAGGTATGTACAGGTGAGGGAGGGCCTACA
CACGGGCACGGGCAGGGGGGGGCGAAGGGGCGGGGCGGGGCGCGGGGCCA
GAAGGGCGTCTGCAGGGGACGCTCAGTGCTCGTGTGCGCTGGGGACTCTT
CGGCGCCAAGCACACCCTGCAGCCTCCGTGCAGATCGGGACATATATACA
CAGCAGCTTTATCAAGGGATGGTTAGTGTGTAGAGGGCGTGCAAGTTTGA
AGCTTAGATGAAGGCCTGCTGCCAACATCAACATCTATGTCCACTGTTGT
GCATCAAAAAACGAACTGTGAAAGATGATACTGACATCTCTGCGATAATA
TATGTCAAGTTCGATTCTTTCTTCCTTTCTCTCTCTCTTTTTTTTTTTCG
TGCGCTCTGAGTCAGTCGAAACTTCCTATAGATCGGTATGAGTACTTCCC
TCCTTCCTCCTCTCCTCTTCTTAGAATTTGACTCCACCACCAAGTGTCAA
AGGGTCGATCGCGTCACCATACAGAAATGTCTCCGTAACGCTCAAATGAC
ATGAGCAGCGATATCATGAGCCATTGCAGCTAGTTCTCCATTGGCGCAGA
CTGCGTACGTTTGTTTGCAACTTATGCCTTTGATGACGTAAGACCGCTCC
GCTTCCAGCTTGCCTCTCAGAGTGAAGCACAGCGGCTTTGCCGGCTACTT
GCAAGTTGAGCTGCTGCTGCTGCAGATCTCATAATACCCCTCGTCTCTCT
CTTCTTTGCAATAAAGAAATCCACTCCGCTTGGTTTTCCTAGGCTCTGCC
TTTGGATGATTGTTGGGCGAGCACCATCTAATACAGGCCCCGAGAATACT
TTTGAAAATTTACCCGTAGAGTGCTACGGGTAAATATGGCCAGTTTTTCA
AAATTTACCCGTAGAGCCAAAAATTTACCCGTAGAGGTCAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGTGCTGGAGAGGCCAGGGTACATGAAAAA
CGATACTGATTAGATTTTTTTTATCACACTTACAACCCTACACCACCCAC
ACACACAAAAAAAAAAAATCAGTCAATCATCCTATCCTCCTGCCCATTCC
TTCCATCCTTCGCCATCCGCTCTTCTTCAACTTTTCCTCTTCCTTGTCCT
TGTGGTATCCTGGGGGTAACTTTTTCTAAGGTTGCCAATGAGAGGCACTC
TCACTTTGCCGATGGTAAACTTGGTTTTGCCAGTCTTGGGCTTCTCGCTC
AGCTTTCTCCACATCTCAATGACCTGGCTTACATCTCAATGATCAGCATC
CAGCTTGCTCTCATCAGTCCAACAGGGCCTGACAGGGTGGAAATACTTCT
TGTTCTGGGGAAGGTCAGATACTGCCTCATTAGTATGTGAGGGTTCTTCG
CGTGCTTCTCCACCAGAGGAGCTGCCACCCTTTGAAATTTCATCCCTGTT
TGCCCTATCATCTACAATAGTTGCCCGAAGTCGATTTGTACTCATCCCCA
AGGCATTGAGGGCGGCGTCACGGTAGTTGGTTGGAGGAGAGTTTTCGCTA
CGAGGAACTGCACCACTTGCGGAACCTCCTCAAGATGACGATGCCATCAC
CAAGAAAGAAGACATAGGCTTCTGGACCATTTTTTTAGCTTTCTTCGAGA
CTCTGGGGGCCATTATTCTTAAAGCAGGACTTTGACGAGAAAAGGATAAG
TTGCGAACAAATGTTTTTTCTTCTGTGATTCGACTGATTGCTGACTGCTG
CGGTGGTGTGGTGGTGGTGGTGGGTGGTGGTGGTGGTGGGTGGTGGGTTG
GTGGTGGTGGTAGTCGCCCGTGGGCAAGATGATTCCTTCCTCTTCTTCCC
TCTAATATTTTTTCGATTGGCCAAACATTTTATTTTATAACAAAATAATC
TTTTGATTGGATATACAAATACTTTTTGACCAATCGATCTGAGTCATCTA
ATAATTAATTTTATATATACAATTGTTTTACCCACAAAATTTAAATGTTT
CGACAATTTTTTTACCGTGGGCCGCCACGGGTAAATATCTCTGGTTTGAA
ATTCACCCGTAGCAGCTCAAAATTCACCCGTAATTACGGGCCAACGGGTA
GTATTCTCGGGGCCTGTAATAGTGTATTGATGATCGGTGGGCGAGCACCA
CCAGCCAGTACGGCTGTCTGTGAAACGCAGTGTACGCAGCACCAAATCTA
AGAAGACTCAAAAACCTTTTGGTGAAGGACATACATTGATTTTTGCTGAT
CTCCTCCCTCTCGCATTCCCGGACGATCAAAGATGTAGATACATGTATAA
ACACATCTTGGTATTTTATTTAATTTAACCAAAAAAAATTACGCCTTGCA
TTCTGGTATCATTCCTTTACACATACCTACTATCACAACCTGAATACTAT
TATAAGGCTGCCACACAAGGAACAGGTGCTCACTGGTGACATACAAAAGG
AGCAACAGAGCAAGAATCCCAGAGATATGGAACAGCCTCGATCATGAAAC
TCTTCAACAGCAGCGCATAGAAGGTTTCATCCCACTCAGAAAGCAGCTTC
AACGTCATATTGTCTCCCAGGCACATCAGAAGTCTTAGAAAAAGAAGAAA
AGAAAAAAAAAATGGAAAGAAAAATGCAAATGACATGAGCTGAGGGAGAG
ACGCGAGTGGAGCCCGCATCTCAGGTTTGTCAGGGAGACTCTGGAGGTAG
CAGGAGTGGACTTGCAGTGGATATTTGAGAGGAAAATGCTGGACCATGAG
CTGCCGTACCCGCTGCTCAGGAAGGCGGTGTAGGTCACCCTGGGCTCGCG
GGAGGCATTAGCGGAGGGGCTGCTGGAGGGGACGAGGGGTGGCAGGATCT
TCACGGATGGGTCAAAGTTGGAGGACGGCTCGGTGGGGGCGGCTTTCGTG
GCATTCAACAGGAGAGGAAGGGAGGTCGGGAGGGGGCTGTATCGGCTACC
ACACCACTACTGCATGGTGTACCAGGCGGAGGGGCTGGCGCAGAGGGAAT
CGGTGCGCTGGACCAAGGGCCAGGGAGGGGCGGCGAGTGGATAGTGGCAT
CGGACTTGTAAGCTCCTCTAGCTTGCTTGAAGAGCGGACGGGGAATGACA
CTCCTGGTGAGTGAGATAGGGCAGGAGGTGGTGGAGCGACATCGTTTGTG
TACATCTTGGGTCACCAGGGGCATGAGGGGAATGAAGTGGCGGACCAGCT
GGCGAAGGAAGCGGCGAATGCAGGGATATAGAGGTGGAGGTGGATGTGCC
GAGAGCCTTCACAAGGAGGCTGGCGAAGGAGTAGACGTGGAGGGTGTGAG
CATTTTTTTTTTTTGTATACGTTCTACTTGCAATGCGTTCCTTCACATCC
TGAACCACACAACCACCGTCTATTTGCAGGCTGCCTTGACATCTGATGCA
TTTCTTCGAGCTAAGTGTGATTACTGACCAACCGAAGTTCCAGCTATCCT
TAACCCTACATGCTCTATTGTCCTTGGCCTCATCTCCCTCTTTCAGTTGT
CTCTACCGTGGGCGCTTCCTCCGACAACTCACATCCATCGACGAGTGCAT
CTTCTCCTTCCCGGGTCGAGGGTGTATCATCTAGACAGACGCAGTCACCC
TCTCGTTTCGGAGCACGAGTGTGCTCCTTCCTAGCCCGTTTTTCAAGCTT
ATGGAATGTAACTTCCACAAGCCGGCCTCATGAACAGTAGGTAGTGCTCA
TGTTTCAACAACCGCCACTTGTGTGGATCATCGATCGTCTACAGCTAACG
CGAGGACATTCCGCGCAGCCCCCAGAGAAATTTTCCAAGGAATTCTCGCA
TGTTCCGAAGAACTTTCCAATTCCTGGAATTTTCACTGAGTAAGCGCCCG
CCAGCGATAGACCTCGTTTCTTTCAACACGGAAATAGGAGTGGAGACATC
TAGAGCATGGGTCGGGGATGGACATAGGAGAGGATAAGGCGTATCTGCAA
TTTGCTCCTACGTTGGATGACATCAAAGAGGCTGCCTGGAAGGGGGGGAA
GGCCGGGGGCCATCGGGTGCTTCAGGGACTGTCAGGGCATTGCAACCTTG
CGGAGCATGTGCACAGCCGGGGGATACGAGGCGGGGCGCAGTGCGACAAC
TGTGAGAGGGGGGAGAAAGAGGACGTGGAGCATTATCTACTTCACTGCCC
ACGATGGGGGGCGCAGTTGCAAGAGATGAGCGACCTCATTGTTCAGAATG
ATGCGCAGGCGAGTATGGCAAACATGTTGAAGGAGGTGGGGAGGCTGGCT
CAATTTGTGCGAAGCACGGGCAGACTAGACTTTTAGAAAGGCAGGGGCTT
AAGCAACAGGGGATGCTGTACTATGGCTTACGGGCTGTATTGTTTTTCTT
TTAAAGTTTTGGTGATGAGTAGGAGCGCGGGAGCTGGGGCCTAGAAGCTG
AAGGGTCCGTGTATGGAGGCCGGGACTTCGGTCCTTGTAGACATCAAAAG
GCTGGACCTCAAATGTATTAAAATCACCACCATCATCATATATATATTAT
ATATATATAATACTGAGTGCGTGTCCATGCAAGCAGTTCGCGCTCATCAA
AGCGGTGGATCTGCGCACCAGGGGCTCCAGGAAGAAGTGGAGGACTTGGG
GTTCGAGGATGGTGAGGGGATTGCCGTTCTCTTCCAGAGCTAGTGGGTTT
AGGGTTTAGTACATTACCACAGAGACATCTACATAGATGCAAGGCGTGGG
GTTTTTGGGTTAAATTTATCTCTCTCTCTCTCTCTCTCTCTCTCTTTATA
TTCATATATATATATATATATATGGGGCTTTCACGCCATGTGGAAGGAGT
TTGAGGAAGATCCGGAGGTGGAGGCGGTGTTCTTGATGGATGCTGCCAAC
GCCTTCAACAGGCTCAACCGAGAACAGGCCTTAGCAGAGGTGAGAAAGTC
CTGGCCCAGAGCTGCCCGCTTCATCTTCAACGCCTACAAGGGGTACAAGA
TGATCTTCCTAGATGGCACGGACGAGATCCTCTACAGTGAGGACGGGTGC
ACCCAGGGTGACCCGATAGCCATGCTCCTGTACGGTGTGGGAGTGAAGCC
TCTGTTCGTGGTGGTGAAGGAGAAGGTCGCCGAGGTCTTCAATGACAAGG
GTGAGAAGCTCTTCCAGGTGCTGTTTGCTGATGATTCTTCGGCGGCCGGC
AAGCTCGAGACTGTTCTGGCCTGGGTGAGAGCCTTGGTGGAGGGAGGGCC
CCAGTATGCGGCTACTTCCCTGAGCCGTCCAAGAGTGTTTTGGTGGTGAA
GGAGGGCAAGGAGGAAAGGGCCAGGGAGGTGTTCGCGGAGTACCCTGACC
TTGAGATTGTCTCTCATCACAGGTTTTTGGGCGGCTGCATTGGCGCAAGT
GCAGGGGTGGAGGCCTACGTGAGGAGGAAGGTGGCCACTTGGGTGGAGTG
TGTGCGGCACCTGGCGCGGGCGGCGGAGAAGTTCCCGCAGTCTGCGTACG
TGGCTTTCACCATGTCGCTGCAGAGTGAGTGGAAATTCCTCCAGCGTCTG
ATCCCGGGGTCCTCCGCTTGGTTCGGGGAGTTGAATGACGTGATCAAGCG
TGAGTTCATCCCTGCGCTGCTTGCCAGGCGGCAGTTCTCTGAGGCTGAGA
TGGAGCTCTTGAGCTGCCCGTCCAGGTGGGGGCTAGGCATTCTCGACCCA
ACCAAGGCCGCGCAGTCCTCCTATGAGCTGTCCTTTTCTGCCACCTCCAT
GGTGCGCCGAAGCCATCCTGGGTGACGAGCCCCTGGGCGTGCCTGGACAC
CGTGCCTATTATGCTGGCCAGCAGCGGAAGCGCAGGGGGGAGGGGGGGCG
GAGCTCAAGGCTAGGTATGAGGAGGTGCTGAGCAAGCTGAGACCGGAGCA
GAGGCAGAAGGTGCAAGGCCAGGTGGACTCCAAGGGCATGTCGTGGATGT
CTGTGGTGCCCGTGCGAAAGAGTCATTTGACTTGTCCGCCAGCAGTGGCG
CGACGGGTGCACCTCCAGTACGGGTGGGACCTTCAGGGGCTGCCTGAGAA
GTGCGATGGATGTGGCAAGCGCTTCTCCACTGACCATGCTCTCTTGTGCT
TGAAGGGGGTCTTATAGGATGGGGCCACAACCAGTTTCGGGATGTCATGG
GGAGTTCAGCCGGGCGGCCTGGAACAACTGCGGCTGGGAGCCGGTGGTGA
GGGAGGCGTCGGAGCGGGCCAGGGATGGAGGTAGCGATGGCTTGAGGGCG
GATTTTGTGGTGAGGGGTGTGTGGGAACCTGATAGGGACTGTCTTTTTGA
TACCGCATTATACATGCTGGCAGCCCTGGACGTGCAGCCCAGCACATCTC
TTACCAGAATGCCCTCAATACCTCTGCCGGGAAAAGGTGAAGTTGTACAA
GGCTGCTGCGGAAGAGCGCCGTGCTACTTTCTGCCCCTTGATAGTGACTG
TGGAGGGTATTGCCCACCAATCCTTGCAGGCCTTCCTCAGGCGCATCGCT
GCTCGGCTTTCGCGGCAAAGTGGCATAAGCCCCTCTCAACGGTCACCAAC
TGGGTGCGTGCCCGCTTGCAGTTCGCGCTCATCAAAGCGGTGGATCTGCG
GACCAGGGCTCCAGGAAGAGGTGGAGGAGCTCGGGGGTTCGAGGATGGCG
AGGATTGCCACTCTCTTCCAGAGATAGTGGGGTGTGCTGTATTTGATGTT
CTGTATTGATTTGGGTTTTGGGATTTCATGTGTAGGTTTTGGTATATTAC
CACAGGGACATCTGCATAGATGCAAGGCGTGGTTGTTTTGTTTAAATTTA
ACTCTATATTTATATATATTATATATATTTATATATATATTATACGTTAT
GATGATGATGATGATTTTAGTTTATTTCAAGTCCGCCTCTTGGATAACTA
CAAGGACCGAAGCCCCGGCCTCCATATGCGGACCCTTCCACTTCTAGGTC
CCACTTTTGCCCATAACGTTATATGTATGTAATGGAAAATACATTTGCAT
CACCTCTCATCATTATGTACCTGGCAGTTTGTTGATGACCACGAAGATGA
CATGAGGCCGGTTCTATTGCCATTCTCAAGTACAACTGACATTGACATAG
AGGAGCATGATACAATCTTCGCAAATTATGATG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig93:1677148..1684280-

>mRNA_H-akashiwo_Contig93.59.1 ID=mRNA_H-akashiwo_Contig93.59.1|Name=mRNA_H-akashiwo_Contig93.59.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=147bp|location=Sequence derived from alignment at H-akashiwo_Contig93:1677148..1684280- (Heterosigma akashiwo CCMP452)
GCGGGAGGGCCTATACACGGGGACCCCAAGCCCGAGGTCCAGTTTGTTGA
TGACCACGAAGATGACATGAGGCCGGTTCTATTGCCATTCTCAAGTACAA
CTGACATTGACATAGAGGAGCATGATACAATCTTCGCAAATTATGAT
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