mRNA_H-akashiwo_Contig93.56.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.56.1
Unique NamemRNA_H-akashiwo_Contig93.56.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig93.56.1 vs. uniprot
Match: A0A7S3XW60_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW60_HETAK)

HSP 1 Score: 202 bits (513), Expect = 2.460e-65
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 3
Query:   12 MANIAGLSDFKKGGEEEKKDSSNALYAGGASAKGGSGQAVLGGDGNSVEGIFNRAAGPQDAAGGEAANSVTITMYQDGFTIDDGPFRSLDDPENQPFLRDMARG 323
            MANIAGLSDFKKGGEEEKKDSSNALYAGGASAKGGSGQAVLGGDGNSVEGIFNRAAGPQDAAGGEAANSVTITMYQDGFTIDDGPFRSLDDPENQPFLRDMARG
Sbjct:    1 MANIAGLSDFKKGGEEEKKDSSNALYAGGASAKGGSGQAVLGGDGNSVEGIFNRAAGPQDAAGGEAANSVTITMYQDGFTIDDGPFRSLDDPENQPFLRDMARG 104          
BLAST of mRNA_H-akashiwo_Contig93.56.1 vs. uniprot
Match: D7FR68_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR68_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 4.060e-19
Identity = 61/120 (50.83%), Postives = 73/120 (60.83%), Query Frame = 3
Query:   12 MANIAGLSDFKKGGEEEKKDSSNALYAGGA--SAKGGSGQAVLG-----------GDGNS-VEGIFNRA--AGPQDAAGGEAANSVTITMYQDGFTIDDGPFRSLDDPENQPFLRDMARG 323
            MAN A L   KKG EEEKK   NA YAGGA  + +GGSG  V+G           G+G+  V+ IF RA   GP    GG    ++TITMY  GFT+DDGPFR LDDP N+ FL+D+A G
Sbjct:    1 MANFATLESLKKGDEEEKKG--NAYYAGGARGAGRGGSGLNVMGPPPDDXXXXXXGNGDPHVQEIFRRAETGGPPGEDGGNE-RTITITMYNGGFTVDDGPFRRLDDPANKDFLKDLASG 117          
BLAST of mRNA_H-akashiwo_Contig93.56.1 vs. uniprot
Match: A0A7S2RQY7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQY7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 7.040e-16
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 3
Query:   12 MANIAGLSDFKKGGEEEKKDSSNALYAGG-ASAKGGSGQAVLGGDGNSVEGIFNRAAGPQDAAGGEAANSVTITMYQDGFTIDDGPFRSLDDPENQPFLRDMARG 323
            MA IAGL D  K GE+E K   N  YAGG A   GGSG  V+G +G + +      +  +  +GGE A  V IT+YQ GF +DDGPFRS +DP NQ F++ M +G
Sbjct:   47 MARIAGLKDLGKEGEDEDK---NKYYAGGNAQGGGGSGLNVIGPEGGAEDPYSGILSNAEPMSGGEEAERV-ITLYQGGFVVDDGPFRSFEDPANQQFIQQMNQG 147          
BLAST of mRNA_H-akashiwo_Contig93.56.1 vs. uniprot
Match: A0A835ZC87_9STRA (SEP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC87_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 7.230e-14
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  135 GGDGNSVEGIFNRAAGPQDAAGGE--AANSVTITMYQDGFTIDDGPFRSLDDPENQPFLRDMARG 323
            GG G+ V+ IF RA+  + A GGE  A + +TI MY+ GFT++DGPFR LDDP N+PFLRD+ +G
Sbjct:   53 GGAGSPVQDIFQRASRQEAAEGGEEGADSQITIFMYRQGFTVNDGPFRRLDDPANEPFLRDLGKG 117          
BLAST of mRNA_H-akashiwo_Contig93.56.1 vs. uniprot
Match: A0A448ZPB0_9STRA (SEP domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPB0_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.800e-13
Identity = 50/116 (43.10%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   12 MANIAGLSDFKKGGEEEKKDSSNALYAGGASAKGG-SGQAV----------LGGDGNSVEGIFNRAAGPQDAAGG-EAANSVTITMYQDGFTIDDGPFRSLDDPENQPFLRDMARG 323
            M+NI GL D K    +E  D  N  Y GG  A+GG SG AV            G  ++ + IF+ A     A+GG +     TITMY+DGF +DDGP+R LDDP N+ FL+ +ARG
Sbjct:    1 MSNIRGLYDDK---NDESSDDENNRYVGGIGARGGGSGLAVEPNTADANPNANGPPSTSDSIFDLAEAAGSASGGGDGEVRRTITMYRDGFVVDDGPYRRLDDPANKEFLKSLARG 113          
BLAST of mRNA_H-akashiwo_Contig93.56.1 vs. uniprot
Match: B7FUL9_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FUL9_PHATC)

HSP 1 Score: 66.2 bits (160), Expect = 8.210e-11
Identity = 44/109 (40.37%), Postives = 58/109 (53.21%), Query Frame = 3
Query:   12 MANIAGLSDFKKGGEEEKKDSSNALYAGGASAKGGSGQAVL-----GGDGNSVEGIFNRAAGPQDAAGGEAANSVTITMYQDGFTIDDGPFRSLDDPENQPFLRDMARG 323
            M+N+ GL   KK   +   D++N    G     GGSG AV      G D ++V G+   A      A     +  TITMY+DGF +DDGP+R L+DPEN  FLR +A G
Sbjct:    1 MSNVHGLFSGKKDDSDSDDDANNRFVGGIGDRGGGSGLAVQPNMDEGPDRDAVFGLAENA-----TAEDSGQSRRTITMYRDGFVVDDGPYRRLEDPENAEFLRHLAMG 104          
BLAST of mRNA_H-akashiwo_Contig93.56.1 vs. uniprot
Match: M4BRU2_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRU2_HYAAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.990e-10
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 3
Query:   12 MANIAGLSDFKKGGEEEKKDSS--NALYAGGASAKGG-SGQAVLG-GDGNSVEGIFNRAAGPQDAAGGEAANSV--TITMYQDGFTIDDGPFRSLDDPENQPFLRDMARG 323
            MANI GLS  +   ++E++DS   N  YAGGAS +GG SG +V+G    + V  I  RA   Q  A  EA+      IT Y+DGFT++DGP+R+  D  N+ FL  + +G
Sbjct:    1 MANIVGLSSLRGRNDDERQDSDEPNQYYAGGASDRGGGSGLSVIGPASDDHVANIIGRA---QQDARSEASTQPRHVITFYRDGFTVNDGPYRTRSDVVNRLFLEALEQG 107          
BLAST of mRNA_H-akashiwo_Contig93.56.1 vs. uniprot
Match: A0A1Z5K441_FISSO (UBX domain-containing protein 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K441_FISSO)

HSP 1 Score: 62.0 bits (149), Expect = 2.930e-9
Identity = 45/105 (42.86%), Postives = 54/105 (51.43%), Query Frame = 3
Query:   12 MANIAGLSDFKKGGEEEKKDSSNALYAGGASAKGGSGQAVLGGDGNSVEGIFNRAAGPQDA-AGGEAANSVTITMYQDGFTIDDGPFRSLDDPENQPFLRDMARG 323
            M+NI GL   +           N    G     GGSG AV      + E IF+RA   +DA A  E     TITMY+DGF +DDGP+R LDDP N  FLR +A G
Sbjct:    1 MSNIHGLFSGRNDXXXXXXXXXNRFVGGIGERGGGSGLAVR----PNPESIFSRA---EDATADDEGQVQRTITMYRDGFVVDDGPYRRLDDPSNGDFLRSLAMG 98          
BLAST of mRNA_H-akashiwo_Contig93.56.1 vs. uniprot
Match: A0A7S1YL29_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YL29_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.840e-8
Identity = 27/59 (45.76%), Postives = 36/59 (61.02%), Query Frame = 3
Query:  147 NSVEGIFNRAAGPQDAAGGEAANSVTITMYQDGFTIDDGPFRSLDDPENQPFLRDMARG 323
            +++ G+  +A        G+     TITMYQ GF +DDGP+R LDDPEN  FLR +A G
Sbjct:   61 DAIFGLAEQAGXXXXXXXGQGPPRRTITMYQSGFVVDDGPYRRLDDPENADFLRSLAMG 119          
BLAST of mRNA_H-akashiwo_Contig93.56.1 vs. uniprot
Match: A0A6T7Z848_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6T7Z848_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 3.860e-8
Identity = 48/138 (34.78%), Postives = 61/138 (44.20%), Query Frame = 3
Query:   12 MANIAGLSDFKKGGEEEKKDSSNALYAGGASAKGG-SGQAVLG---------------------------------GDGNSVEGIFNRAAGPQDAAGGEAANSVTITMYQDGFTIDDGPFRSLDDPENQPFLRDMARG 323
            MAN+ GL D K   E+EK+    A YAGG    GG SGQ +L                                  G GN++ G   + A P      +     TIT +Q+GFT+DDGP R  DDPE+Q FL  + RG
Sbjct:    9 MANVRGLKDVKDEDEDEKRQ---AYYAGGQGQNGGGSGQEILDPREFMERARNEMGAQTHDEWRSQQPGAASSNFTGAGNTLSGDSVQGAAPPP----QQPTEHTITFWQNGFTVDDGPLRGKDDPESQAFLAAVNRG 139          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XW60_HETAK2.460e-65100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FR68_ECTSI4.060e-1950.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2RQY7_9STRA7.040e-1647.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835ZC87_9STRA7.230e-1455.38SEP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A448ZPB0_9STRA1.800e-1343.10SEP domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
B7FUL9_PHATC8.210e-1140.37Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
M4BRU2_HYAAE4.990e-1042.73Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A1Z5K441_FISSO2.930e-942.86UBX domain-containing protein 1 n=2 Tax=Fistulifer... [more]
A0A7S1YL29_9STRA3.840e-845.76Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6T7Z848_9EUKA3.860e-834.78Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:1634907..1635563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FR68
PFAMsSEP,UBA_4,UBX
Model size326
Max annot lvl2759|Eukaryota
KEGG koko:K14012
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006914,GO:0006996,GO:0006997,GO:0006998,GO:0007030,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010256,GO:0010498,GO:0010921,GO:0016043,GO:0016236,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0019941,GO:0022607,GO:0030163,GO:0030234,GO:0031323,GO:0031399,GO:0031468,GO:0032182,GO:0032268,GO:0035303,GO:0035304,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0043666,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0051603,GO:0060255,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575,GO:1905037
Exons3
Evalue1.54e-20
EggNOG OGsKOG2086@1|root,KOG2086@2759|Eukaryota
Descriptionnuclear envelope reassembly
Cds size315
COG categoryS
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388048.232297-UTR-H-akashiwo_Contig93:1634906..16349171681388048.232297-UTR-H-akashiwo_Contig93:1634906..1634917Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig93 1634907..1634917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388048.2438438-CDS-H-akashiwo_Contig93:1634917..16350241681388048.2438438-CDS-H-akashiwo_Contig93:1634917..1635024Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 1634918..1635024 +
1681388048.253237-CDS-H-akashiwo_Contig93:1635156..16352191681388048.253237-CDS-H-akashiwo_Contig93:1635156..1635219Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 1635157..1635219 +
1681388048.268026-CDS-H-akashiwo_Contig93:1635418..16355631681388048.268026-CDS-H-akashiwo_Contig93:1635418..1635563Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 1635419..1635563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.56.1prot_H-akashiwo_Contig93.56.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 1634918..1635563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.56.1

>prot_H-akashiwo_Contig93.56.1 ID=prot_H-akashiwo_Contig93.56.1|Name=mRNA_H-akashiwo_Contig93.56.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=105bp
MANIAGLSDFKKGGEEEKKDSSNALYAGGASAKGGSGQAVLGGDGNSVEG
IFNRAAGPQDAAGGEAANSVTITMYQDGFTIDDGPFRSLDDPENQPFLRD
MARG*
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mRNA from alignment at H-akashiwo_Contig93:1634907..1635563+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.56.1 ID=mRNA_H-akashiwo_Contig93.56.1|Name=mRNA_H-akashiwo_Contig93.56.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=657bp|location=Sequence derived from alignment at H-akashiwo_Contig93:1634907..1635563+ (Heterosigma akashiwo CCMP452)
CTGCGAACAAAATGGCGAATATTGCTGGTCTGTCTGATTTCAAAAAGGGC GGGGAAGAGGAGAAGAAAGATTCAAGTAATGCTCTATATGCAGGCGGTGC GAGTGCCAAGGGTGGCAGGTGCCTCTTCCTTCCCTCCCGATCTGTTTTGT TTGTTCTCCTTTACTTTTTTTTTGTTCCAATCAACTCTTCCTCCCACAAA GGCTCAGACTTGCGCTGTTTCTTTTGTTCAAACATGCCTGTATGGTACAG TGGTCAAGCTGTCCTTGGTGGAGATGGTAACTCAGTGGAAGGAATTTTCA ATAGAGCCGCTGGGTGAGTTTTCCATTGGACGATTACATGTAAAAATGAT GTCAAGGTAATCCTTCTTTGAATAAGTACTCCAGCACGAACTTGTGACGC GCTGGTTAGCGTTGCACATACATGCTGTGATAGCAGGTTTTTGGTGCGCA GTCCAGATGGAGCCACCATATGAATTGCCTGAAAATATCCAACCAACTGT ACTGTTTTTCAGCCCGCAGGATGCTGCAGGTGGAGAAGCTGCAAACTCAG TCACCATCACAATGTATCAGGATGGTTTCACAATTGACGACGGTCCTTTC AGATCACTAGATGACCCTGAAAACCAGCCTTTTCTGCGAGACATGGCTCG AGGGTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig93:1634907..1635563+

>mRNA_H-akashiwo_Contig93.56.1 ID=mRNA_H-akashiwo_Contig93.56.1|Name=mRNA_H-akashiwo_Contig93.56.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=315bp|location=Sequence derived from alignment at H-akashiwo_Contig93:1634907..1635563+ (Heterosigma akashiwo CCMP452)
ATGGCGAATATTGCTGGTCTGTCTGATTTCAAAAAGGGCGGGGAAGAGGA
GAAGAAAGATTCAAGTAATGCTCTATATGCAGGCGGTGCGAGTGCCAAGG
GTGGCAGTGGTCAAGCTGTCCTTGGTGGAGATGGTAACTCAGTGGAAGGA
ATTTTCAATAGAGCCGCTGGCCCGCAGGATGCTGCAGGTGGAGAAGCTGC
AAACTCAGTCACCATCACAATGTATCAGGATGGTTTCACAATTGACGACG
GTCCTTTCAGATCACTAGATGACCCTGAAAACCAGCCTTTTCTGCGAGAC
ATGGCTCGAGGGTAA
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