mRNA_H-akashiwo_Contig93.54.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.54.1
Unique NamemRNA_H-akashiwo_Contig93.54.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig93.54.1 vs. uniprot
Match: A0A7S0KLI4_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KLI4_9CHLO)

HSP 1 Score: 249 bits (637), Expect = 5.300e-82
Identity = 116/154 (75.32%), Postives = 128/154 (83.12%), Query Frame = 1
Query:   10 NSPVVYGDESIMSQKAHGTSETPVQQNLLYGVSRDTADRICNFNRHYAEHSGYAWQTNWLTDVDKSTETTYFDSNTGKPLFTAPRGRSFEDFERESRAHGWPSFRDEEVNWEFVRVLPDGEAVSVDGTHLGHNLPDRKGNRYCINLVSVAGQPI 471
            N P+V G+E +MSQKAHGTS+TPVQ  LLYG     ADRICNFNRHYAEH+GYAW T WL+ VD++ ETTY+DS TGKPLF APRGRSFE+FE+ESRAHGWPSFRDEEV WE VR L DGE VS  GTHLGH LPDR GNRYCINLVSVAG P+
Sbjct:   61 NLPIVCGEE-VMSQKAHGTSDTPVQDKLLYGCDVSLADRICNFNRHYAEHAGYAWSTPWLSQVDRTKETTYYDSVTGKPLFIAPRGRSFEEFEKESRAHGWPSFRDEEVVWENVRCLRDGECVSTTGTHLGHCLPDRSGNRYCINLVSVAGTPV 213          
BLAST of mRNA_H-akashiwo_Contig93.54.1 vs. uniprot
Match: A0A3B8LLN3_9DELT (Uncharacterized protein n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A3B8LLN3_9DELT)

HSP 1 Score: 246 bits (629), Expect = 2.220e-81
Identity = 113/151 (74.83%), Postives = 126/151 (83.44%), Query Frame = 1
Query:   22 VYGDESIMSQKAHGTSETPVQQNLLYGVSRDTADRICNFNRHYAEHSGYAWQTNWLTDVDKSTE-TTYFDSNTGKPLFTAPRGRSFEDFERESRAHGWPSFRDEEVNWEFVRVLPDGEAVSVDGTHLGHNLPDRKGNRYCINLVSVAGQPI 471
            V GDESIMS KAHGTS  PVQ++L YG  R+ ADRICNFNRHYAEH+GY   T+WL  +D S E TTY+D N+GKPLF AP GRSF+ F RES+AHGWPSFRDEEVNW FVRVLPDGE VSVDGTHLGHN+PDR GNRYCINLVS+AG P+
Sbjct:   23 VMGDESIMSPKAHGTSTVPVQEDLRYGCDRELADRICNFNRHYAEHAGYFMTTDWLDQIDTSGEPTTYYDPNSGKPLFQAPIGRSFDAFLRESKAHGWPSFRDEEVNWNFVRVLPDGECVSVDGTHLGHNIPDRSGNRYCINLVSIAGNPV 173          
BLAST of mRNA_H-akashiwo_Contig93.54.1 vs. uniprot
Match: A0A7S1DEN2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DEN2_HEMAN)

HSP 1 Score: 242 bits (617), Expect = 1.020e-78
Identity = 112/149 (75.17%), Postives = 129/149 (86.58%), Query Frame = 1
Query:   22 VYGDESIMSQKAHGTSETPVQQNLLYGVSRDTADRICNFNRHYAEHSGYAWQTNWLTDVDKSTETTYFDSNTGKPLFTAPRGRSFEDFERESRAHGWPSFRDEEVNWEFVRVLPDGEAVSVDGTHLGHNLPDRKGNRYCINLVSVAGQP 468
            + GDESIMS+KAHGTSE PVQ +L +G   +TADRICNFNRHYAE++GY   TN+L +V +  ETTY+DSNTGKPLF APRGR+FEDF +ES++HGWPSFRDEEV WE VR L DGE+VSVDGTHLGHNLPDRKGNRYCINLVSVAG+P
Sbjct:   83 IVGDESIMSKKAHGTSEVPVQTDLRWGCDVETADRICNFNRHYAEYAGYWETTNFLKEVARDGETTYYDSNTGKPLFIAPRGRTFEDFVKESKSHGWPSFRDEEVVWENVRCLRDGESVSVDGTHLGHNLPDRKGNRYCINLVSVAGKP 231          
BLAST of mRNA_H-akashiwo_Contig93.54.1 vs. uniprot
Match: A0A7S0Z418_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z418_9CRYP)

HSP 1 Score: 237 bits (604), Expect = 4.120e-77
Identity = 112/151 (74.17%), Postives = 127/151 (84.11%), Query Frame = 1
Query:   16 PVVYGDESIMSQKAHGTSETPVQQNLLYGVSRDTADRICNFNRHYAEHSGYAWQTNWLTDVDKSTETTYFDSNTGKPLFTAPRGRSFEDFERESRAHGWPSFRDEEVNWEFVRVLPDGEAVSVDGTHLGHNLPDRKGNRYCINLVSVAGQP 468
            P+  G E +MS+KAHGT  TPVQQNL +GV RD AD+IC FNRHYAEHSGY  +T +LT+VDK+ ETTY+DS  GKPLF APRGR+FE+F+ ES +HGWPSFRDEEV WE VR L DGE+VSVDGTHLGHNLPDRKGNRYCINLVSVAG P
Sbjct:   56 PIQCG-EDVMSKKAHGTCATPVQQNLRWGVDRDVADKICCFNRHYAEHSGYWLKTKFLTEVDKTGETTYYDSVDGKPLFIAPRGRTFEEFKAESSSHGWPSFRDEEVVWENVRCLRDGESVSVDGTHLGHNLPDRKGNRYCINLVSVAGNP 205          
BLAST of mRNA_H-akashiwo_Contig93.54.1 vs. uniprot
Match: A0A7S2FBW5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBW5_9STRA)

HSP 1 Score: 235 bits (599), Expect = 5.320e-77
Identity = 112/153 (73.20%), Postives = 124/153 (81.05%), Query Frame = 1
Query:   16 PVVYGDESIMSQKAHGTSETPVQQNLLYGVSRDTADRICNFNRHYAEHSGYA-WQTNWLTDVDKSTETTYFDSNTGKPLFTAPRGRSFEDFERESRAHGWPSFRDEEVNWEFVRVLPDGEAVSVDGTHLGHNLPDRKGNRYCINLVSVAGQPI 471
            PV  G E +MS KAHGTSE PVQ NL YG  + TADRICNFNRHYAEHSGYA  +T+WL  + ++  T YFDSNTGK LFTAP GRS+EDF  ES++HGWPSFRD EVNWEFVR L +GE VSVDGTHLGHNLPDR GNRYCINLVSVAG P+
Sbjct:   11 PVECG-EDVMSPKAHGTSEVPVQDNLRYGCDKATADRICNFNRHYAEHSGYAVGKTSWLQTISQTETTDYFDSNTGKLLFTAPVGRSYEDFIAESKSHGWPSFRDAEVNWEFVRCLENGECVSVDGTHLGHNLPDRTGNRYCINLVSVAGNPV 162          
BLAST of mRNA_H-akashiwo_Contig93.54.1 vs. uniprot
Match: A0A1Z5KDP0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDP0_FISSO)

HSP 1 Score: 234 bits (598), Expect = 8.070e-77
Identity = 109/152 (71.71%), Postives = 126/152 (82.89%), Query Frame = 1
Query:   16 PVVYGDESIMSQKAHGTSETPVQQNLLYGVSRDTADRICNFNRHYAEHSGYAWQTNWLTDVDKSTET-TYFDSNTGKPLFTAPRGRSFEDFERESRAHGWPSFRDEEVNWEFVRVLPDGEAVSVDGTHLGHNLPDRKGNRYCINLVSVAGQP 468
            P V GDESIMS K+HGTS  PVQ NL +G  RDTADRICNFNRHYAE+SGY  +TN++ D   + E   ++DSNTGK LFTAP+GR+ ++F  ESRAHGWPSFRD+EVNW+FVRVL DGE VSVDGTHLGHNLPD+KG+RYCINLVSVAG P
Sbjct:   10 PCVMGDESIMSPKSHGTSAVPVQNNLRWGCDRDTADRICNFNRHYAEYSGYFEKTNFIKDAKANPEEINFYDSNTGKLLFTAPKGRTMDEFLTESRAHGWPSFRDQEVNWDFVRVLSDGETVSVDGTHLGHNLPDKKGSRYCINLVSVAGNP 161          
BLAST of mRNA_H-akashiwo_Contig93.54.1 vs. uniprot
Match: A0A090N3B6_OSTTA (Mss4-like n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N3B6_OSTTA)

HSP 1 Score: 233 bits (594), Expect = 1.670e-75
Identity = 106/149 (71.14%), Postives = 120/149 (80.54%), Query Frame = 1
Query:   22 VYGDESIMSQKAHGTSETPVQQNLLYGVSRDTADRICNFNRHYAEHSGYAWQTNWLTDVDKSTETTYFDSNTGKPLFTAPRGRSFEDFERESRAHGWPSFRDEEVNWEFVRVLPDGEAVSVDGTHLGHNLPDRKGNRYCINLVSVAGQP 468
            +  DES+MSQK HGTSE PV +NL YGV  D  DRICNFNRHYAEH+GYAWQT+W++DV    E TY+DS TG PLF APRGR++E+FE+ESRAHGWPSFRD E+  E VR L DGE VS  GTHLGHNLPDR GNRYCIN+VSVAG P
Sbjct:   61 IVADESVMSQKQHGTSEFPVMKNLRYGVDWDLTDRICNFNRHYAEHAGYAWQTSWISDVQGKGEVTYYDSVTGAPLFIAPRGRTWEEFEKESRAHGWPSFRDAEMVSENVRCLRDGECVSTTGTHLGHNLPDRNGNRYCINIVSVAGNP 209          
BLAST of mRNA_H-akashiwo_Contig93.54.1 vs. uniprot
Match: A0A7S2E2J6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E2J6_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.670e-75
Identity = 113/158 (71.52%), Postives = 124/158 (78.48%), Query Frame = 1
Query:   16 PVVYGDESIMSQKAHGTSETPVQQNLLYGVSRDTADRICNFNRHYAEHSGYAWQTNWLTDVD------KSTETTYFDSNTGKPLFTAPRGRSFEDFERESRAHGWPSFRDEEVNWEFVRVLPDGEAVSVDGTHLGHNLPDRKGNRYCINLVSVAGQPI 471
            PVV GDESIMS+KAHGTS TPVQ NL +     TADRICNFNRHYAE+SGY   T +LT  +       S E T++DSNTGKPLF AP+ RSFEDF  ES +HGWPSFRDEEV W+ VR+L  GEAVSVDGTHLGHNLPDRKGNRYCINLVSVAG PI
Sbjct:   49 PVVMGDESIMSKKAHGTSNTPVQDNLRWSCDTKTADRICNFNRHYAEYSGYWKSTTFLTSPEAQEAKQNSKEITFYDSNTGKPLFVAPKSRSFEDFVAESLSHGWPSFRDEEVVWDNVRILKGGEAVSVDGTHLGHNLPDRKGNRYCINLVSVAGHPI 206          
BLAST of mRNA_H-akashiwo_Contig93.54.1 vs. uniprot
Match: K8EC50_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EC50_9CHLO)

HSP 1 Score: 232 bits (592), Expect = 4.970e-75
Identity = 106/149 (71.14%), Postives = 125/149 (83.89%), Query Frame = 1
Query:   22 VYGDESIMSQKAHGTSETPVQQNLLYGVSRDTADRICNFNRHYAEHSGYAWQTNWLTDVDKSTETTYFDSNTGKPLFTAPRGRSFEDFERESRAHGWPSFRDEEVNWEFVRVLPDGEAVSVDGTHLGHNLPDRKGNRYCINLVSVAGQP 468
            +  DESIMS+KAHGTS++PVQ+ L +    +TADRICNFNRHYAE++GY   T++L +VD++ ETTY+DS TGKPLF APRGR+FE+FE ESRAHGWPSFRDEEV W+ VR +P GEAVS  GTHLGHNLPDRKGNRYCINLVSVA  P
Sbjct:   75 IMADESIMSKKAHGTSDSPVQKELRWNCDYETADRICNFNRHYAEYAGYFLSTSFLKEVDRTKETTYYDSVTGKPLFVAPRGRTFEEFESESRAHGWPSFRDEEVVWDNVRCVPGGEAVSTTGTHLGHNLPDRKGNRYCINLVSVAAMP 223          
BLAST of mRNA_H-akashiwo_Contig93.54.1 vs. uniprot
Match: A6G587_9DELT (Uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 TaxID=391625 RepID=A6G587_9DELT)

HSP 1 Score: 229 bits (584), Expect = 1.580e-74
Identity = 108/151 (71.52%), Postives = 123/151 (81.46%), Query Frame = 1
Query:   22 VYGDESIMSQKAHGTSETPVQQNLLYGVSRDTADRICNFNRHYAEHSGYAWQTNWLTDVDKSTE-TTYFDSNTGKPLFTAPRGRSFEDFERESRAHGWPSFRDEEVNWEFVRVLPDGEAVSVDGTHLGHNLPDRKG-NRYCINLVSVAGQP 468
            V G +S+M  KAHG+SETPVQ  L YG     ADRICNFNRHYAE SGY   T WL++VD+S E T+Y+D+N+GK LF AP GRSFEDF  ES+AHGWPSFRDEEVNW +VRVLPDGE VS+DGTHLGHN+PDR+G NRYCINLVSVAG P
Sbjct:   23 VMGHDSLMRPKAHGSSETPVQDPLRYGCDTQLADRICNFNRHYAERSGYFLTTQWLSEVDRSGEPTSYYDANSGKELFRAPIGRSFEDFLAESKAHGWPSFRDEEVNWNYVRVLPDGECVSIDGTHLGHNIPDRQGRNRYCINLVSVAGSP 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0KLI4_9CHLO5.300e-8275.32Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
A0A3B8LLN3_9DELT2.220e-8174.83Uncharacterized protein n=2 Tax=Deltaproteobacteri... [more]
A0A7S1DEN2_HEMAN1.020e-7875.17Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0Z418_9CRYP4.120e-7774.17Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S2FBW5_9STRA5.320e-7773.20Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1Z5KDP0_FISSO8.070e-7771.71Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A090N3B6_OSTTA1.670e-7571.14Mss4-like n=2 Tax=Ostreococcus tauri TaxID=70448 R... [more]
A0A7S2E2J6_9STRA1.670e-7571.52Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K8EC50_9CHLO4.970e-7571.14Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
A6G587_9DELT1.580e-7471.52Uncharacterized protein n=1 Tax=Plesiocystis pacif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:1624083..1624559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog227086.JGI_V11_52859
Model size477
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.99e-78
EggNOG OGs2CXMY@1|root,2RYJZ@2759|Eukaryota
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388048.200535-CDS-H-akashiwo_Contig93:1624082..16245591681388048.200535-CDS-H-akashiwo_Contig93:1624082..1624559Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 1624083..1624559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.54.1prot_H-akashiwo_Contig93.54.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 1624083..1624559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.54.1

>prot_H-akashiwo_Contig93.54.1 ID=prot_H-akashiwo_Contig93.54.1|Name=mRNA_H-akashiwo_Contig93.54.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=159bp
MASNSPVVYGDESIMSQKAHGTSETPVQQNLLYGVSRDTADRICNFNRHY
AEHSGYAWQTNWLTDVDKSTETTYFDSNTGKPLFTAPRGRSFEDFERESR
AHGWPSFRDEEVNWEFVRVLPDGEAVSVDGTHLGHNLPDRKGNRYCINLV
SVAGQPIG*
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mRNA from alignment at H-akashiwo_Contig93:1624083..1624559-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.54.1 ID=mRNA_H-akashiwo_Contig93.54.1|Name=mRNA_H-akashiwo_Contig93.54.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=477bp|location=Sequence derived from alignment at H-akashiwo_Contig93:1624083..1624559- (Heterosigma akashiwo CCMP452)
ATGGCATCTAACAGTCCCGTTGTCTACGGTGATGAATCGATCATGAGTCA GAAAGCTCACGGCACATCAGAAACGCCGGTGCAGCAGAACCTCTTGTATG GTGTCAGCCGGGACACGGCAGACAGAATCTGCAACTTCAACAGGCACTAC GCCGAGCATTCGGGCTATGCCTGGCAGACCAACTGGCTTACGGATGTTGA CAAGAGCACGGAAACTACTTACTTTGACTCCAATACAGGAAAGCCCCTGT TCACTGCTCCCCGCGGACGGAGCTTTGAGGACTTTGAACGTGAGTCGCGC GCCCACGGTTGGCCCAGCTTCCGCGACGAAGAGGTGAACTGGGAGTTTGT GCGGGTGCTACCTGATGGGGAAGCAGTGAGCGTCGACGGCACTCATCTGG GACACAACCTTCCGGACCGGAAGGGAAACCGCTACTGCATCAACTTGGTC TCTGTTGCAGGCCAGCCCATCGGTTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig93:1624083..1624559-

>mRNA_H-akashiwo_Contig93.54.1 ID=mRNA_H-akashiwo_Contig93.54.1|Name=mRNA_H-akashiwo_Contig93.54.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=477bp|location=Sequence derived from alignment at H-akashiwo_Contig93:1624083..1624559- (Heterosigma akashiwo CCMP452)
ATGGCATCTAACAGTCCCGTTGTCTACGGTGATGAATCGATCATGAGTCA
GAAAGCTCACGGCACATCAGAAACGCCGGTGCAGCAGAACCTCTTGTATG
GTGTCAGCCGGGACACGGCAGACAGAATCTGCAACTTCAACAGGCACTAC
GCCGAGCATTCGGGCTATGCCTGGCAGACCAACTGGCTTACGGATGTTGA
CAAGAGCACGGAAACTACTTACTTTGACTCCAATACAGGAAAGCCCCTGT
TCACTGCTCCCCGCGGACGGAGCTTTGAGGACTTTGAACGTGAGTCGCGC
GCCCACGGTTGGCCCAGCTTCCGCGACGAAGAGGTGAACTGGGAGTTTGT
GCGGGTGCTACCTGATGGGGAAGCAGTGAGCGTCGACGGCACTCATCTGG
GACACAACCTTCCGGACCGGAAGGGAAACCGCTACTGCATCAACTTGGTC
TCTGTTGCAGGCCAGCCCATCGGTTGA
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