mRNA_H-akashiwo_Contig93.52.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.52.1
Unique NamemRNA_H-akashiwo_Contig93.52.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig93.52.1 vs. uniprot
Match: A0A7S3XMC6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMC6_HETAK)

HSP 1 Score: 118 bits (296), Expect = 2.200e-33
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 2 
Query:    2 NYVTTVMSTMIELAEGICGEELQYRMSTSHPSRDDWGTQLKKMQGKAVLFRMQKPV 169
            NYVTTVMSTMIELAEGICGEELQYRMSTSHPSRDDWGTQLKKMQGKAVLFRMQKPV
Sbjct:   48 NYVTTVMSTMIELAEGICGEELQYRMSTSHPSRDDWGTQLKKMQGKAVLFRMQKPV 103
[Close]
BLAST of mRNA_H-akashiwo_Contig93.52.1 vs. uniprot
Match: D7FT43_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT43_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.220e-8
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 2 
Query:    2 NYVTTVMSTMIELAEGICGEELQYRMSTSHPSRDDWGTQLKKMQGKAVLFRMQK 163
            N++TTV+STM+E+AEG+  EEL+YRM    P+ DDW  Q   M+ +AV ++ ++
Sbjct:  554 NFITTVISTMVEVAEGLSEEELKYRMLAESPASDDWARQEMTMRKRAVQWQYKR 607
[Close]
BLAST of mRNA_H-akashiwo_Contig93.52.1 vs. uniprot
Match: A0A835ZHC0_9STRA (mRNA_cap_enzyme domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHC0_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.450e-6
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 2 
Query:    2 NYVTTVMSTMIELAEGICGEELQYRMSTSHPSRDDWGTQLKK 127
            N+VTTVM+T++ELAEGI  EEL YRM+    + D+W  Q +K
Sbjct:  823 NFVTTVMATLVELAEGIGEEELVYRMAVGDAAEDEWDKQSRK 864
[Close]
BLAST of mRNA_H-akashiwo_Contig93.52.1 vs. uniprot
Match: L1JDS1_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JDS1_GUITC)

HSP 1 Score: 50.1 bits (118), Expect = 1.640e-5
Identity = 21/53 (39.62%), Postives = 37/53 (69.81%), Query Frame = 2 
Query:    2 NYVTTVMSTMIELAEGICGEELQYRMSTSHPSRDDWGTQLKKMQGKAVLFRMQ 160
            N+  TV++T++E+AEG+  EEL+YR++  +P  DDW  Q+ K + + +  R+Q
Sbjct:  486 NFSRTVLATIMEIAEGMDIEELEYRLTFRNPEEDDWTYQIDKKRKEILATRLQ 538
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3XMC6_HETAK2.200e-33100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FT43_ECTSI1.220e-846.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZHC0_9STRA3.450e-654.76mRNA_cap_enzyme domain-containing protein n=1 Tax=... [more]
L1JDS1_GUITC1.640e-539.62Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:1591476..1602222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT43
PFAMsDSPc,mRNA_cap_C,mRNA_cap_enzyme,mRNA_triPase
Model size185
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00987,ko:K01104,ko:K08244,ko:K13917,ko:K14165
KEGG ReactionR03828,R10814
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue4.49e-06
EggNOG OGsCOG5226@1|root,KOG2386@2759|Eukaryota
EC2.7.7.50,2.7.9.4,3.1.3.16,3.1.3.48
DescriptionmRNA guanylyltransferase activity
Cds size153
COG categoryA
BRITEko00000,ko00001,ko01000,ko01009,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388048.137221-UTR-H-akashiwo_Contig93:1591475..15914881681388048.137221-UTR-H-akashiwo_Contig93:1591475..1591488Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig93 1591476..1591488 -
1681388048.1646948-UTR-H-akashiwo_Contig93:1602203..16022221681388048.1646948-UTR-H-akashiwo_Contig93:1602203..1602222Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig93 1602204..1602222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388048.147515-CDS-H-akashiwo_Contig93:1591488..15915851681388048.147515-CDS-H-akashiwo_Contig93:1591488..1591585Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 1591489..1591585 -
1681388048.1561038-CDS-H-akashiwo_Contig93:1602147..16022031681388048.1561038-CDS-H-akashiwo_Contig93:1602147..1602203Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 1602148..1602203 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.52.1prot_H-akashiwo_Contig93.52.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 1591489..1602203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.52.1

>prot_H-akashiwo_Contig93.52.1 ID=prot_H-akashiwo_Contig93.52.1|Name=mRNA_H-akashiwo_Contig93.52.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=51bp
MSTMIELAEGICGEELQYRMSTSHPSRDDWGTQLKKMQGKAVLFRMQKPV
*
back to top

mRNA from alignment at H-akashiwo_Contig93:1591476..1602222-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.52.1 ID=mRNA_H-akashiwo_Contig93.52.1|Name=mRNA_H-akashiwo_Contig93.52.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=10747bp|location=Sequence derived from alignment at H-akashiwo_Contig93:1591476..1602222- (Heterosigma akashiwo CCMP452)
AAACTATGTCACAACAGTCATGAGCACAATGATTGAGCTAGCAGAAGGAA
TATGCGGAGAAGAACTTCAGTACAGGTGACTGATAAACAATGCCACTGAT
CTATTTTATTATTTTAGGGTTATTGTAACTTTCACCATACACCCCTTCCT
GCTGCTCTTGGGTCTTCAGATTTTGGTTGTTATCACAAGTGGCTTCAGAA
ACTGCTATGTAGAAGACTGCGACAGCAGCAACAACAACGGAAAGAAACAC
TATTTTTCCTGTATATATATTCCGCCTGATGTCTAGCTACAGTTTGAGTT
GATAGAGAAAATGCCTTCATTAATTTTTAATGCTGGCAACCTCGTCATCT
GTGTATGTCAGTAAAATCACAAGAATGAAATGAAACGTGTTTGTTGAGAG
CTCACTTCCAGATCCAACCATCCAGCAAAGCTGAATATTGCTTGGCATCA
ACTGCTGAAACCCGAAACACAATTATTTTGAAGTGATTGCCCAGTGTACT
GTCATGTACTATACTCACTTACTCCCACTCTTTTTTAGAATTTAGAAGAT
CAATTTTTGGGAAAATAATATGAACATAGAGGTCCCGGTCTGCGGACCGC
AGGCCCACCTCTGCCCTCTAAATGGGGCAGGGGGGCAGTGTTTAGCTGAC
CATAGCGATCTCCTTTGGCGCAAAAACACGCAGATGCTGGGGTGATTCTC
AGAGGAGGGGTGTCCTGCGTTGCTGTCCTCGCGACTGGAGCACTTGAGAC
AGCCGAACGCTTGTTGCTTTGAGGGGATTCGGGGCGGACCCCACAGGGCA
GTGGCTTGTTCGAGAGTGGGAGTTGTAGGGGTAGGGGCGGGATTCAGTTG
GAATCGAGGACTGGCCCTAGTAGGCGCAGTTTGCGGCGGTGATGACGACT
CGAAGTGGTATACAAGTGGCCCTGTGCATCGAATGGAGAAGGAAGCACTA
CGCGGCAGACAGAAGGGCGATGCAGGCAAACAAGCAGGACTTTCAGGGCT
TGGTGGCTGATACGACAGCGACTCGACCAGTCCTCGCAGGGAAGGGGCCA
AAGCGCCCAGGTAAACAAGCCCGTGAGCGGTTTCGACGGCAGCAAGCCAA
GAAGAGAGTTCAGTCCTCCATCAGGAGGCCTGTTCGAGCTCAAGCAACTG
GCCCAAGAGATCAAGTCGAGCAAACGATAAATCGTCAGCAGCAAGCACCG
CCCATGGCTTCTACTGATGATGACTTGGCTGCTCCTTTTTCTTGTAGGAC
AGATGCTGGAGGCGGGGAGCAAGATCAAGAAGATGAGTTTTGTGCCCGTT
TAGACAGGCATCAGCGAATCATAATTTTGAATCCGGGATTTGATGGAGCC
GGGGGGGGGAATCCGGAGCAGCGGGAGACCAACGCGGGTTTATCCGGCGC
TGGTGGGAGGACCGGTCCGCCAATCAGATCGGCGGTGGGGACGGGAAGAA
GTAGGGAGGGAGGAGGAGGAGGAAGTCCTGAGGCGGCGGTGCCGTCAGCA
ACTGATGCTTCTGCTGCTGCTGCTGCTAGCGTCCATCGCGCTTCTTCTTG
ACAGAGTAGCGACTGTGCTGAAGTTCTGCGGGGCAAAACGGTCAGCCAGG
CGATGGTGGCGAGATAGGCACCGGGGCGAGGGGGCAATCTGAGGCGCCGG
GCTGCGTTGAAGAAGCTGGCTCGGCGATGAAGACACGGGTTCGAGCTCGG
GGGCGACTCAGCAAGGGGACACGTTTTCAGCCCCAGAGAAAAGAGGGACC
TGGGCTAAGCAGATGGCTGCTGACCAGGAGGGGTTTACTGTGGTCAGCAC
GAGGGAAGAAAAGAGGCAGGCAAAGCCGTGACGTTGCAGAAGGAGGAGGA
GAAGAAAATTGTGGAGCTAGCTGCGAAGGCAAAGGAGGAGGAGTTAAGGG
ACCTCGAGATCCAGCGAAAGCGATTAGCTGAGAACAGCCAGCGCTGGCCC
CAAACTAGGGCCAGGGTTACAAGAGAGCGCCAGGAAGCTCAGGCCAAGGA
GGCTGAAGGAAGGGCACAGAGACCTGGGGCCCTGCAGGGGGGGGAGAGGG
GAGGCAGGCTGGCTGGGGGCGGGAGAGGGAGGGGTGGTGGAGGGTTGGGC
AGGGGCAGGGAGGACCTGCTGGAAGTCAGGAAGACAGGTCAGAAGCCCAG
TGGGAAGGGGGGGGGCGAGCCTGGCTCGCCACCCTCATCAGCGGGCCCGG
ATCAAGAGCAGAGATGGCAGAGAGTGGACATTGGAGGTAGCCTGCGGCAT
TTGTGGCATTGCTCAACACCCTACTGGGACGGTCAAAGAGTGTCCAGTGG
GGGGATGTCACGTCTGTCGCAAGGGAGGAGATGCGGGGGGCTGCAGCTAT
GAGGATGGAAGGCTTTTCTTCAGGGCCTTGTTCAATGAGCTGGTACCAGA
TCCGGCAAATCCGTTTGAGGTGGTAACTGCATGGCAGGACTGGAAGGACC
AGCTGGGGATCTAGCATTCAGTTATGGTAGTAGTAGTAGATAGCGTTGGT
GTTACAACAGAGGTACAATGACATGGGTATGGCTGGAGTGGTGTGTGATA
CTTGTTCCTGTGTTCGTAGGGAGACTTGACTAGTGTTATTCTGATATGGC
AGTAAGAGATGGAGGGGTCTCCTGATAGAAGCTAGGGGTACTGCCCCGAA
AGCGATTTGATAGGGTAGACTGTAAACTAAACTTAACATCATCATCATCA
TGTACTATATTCACATGACTATGGCATATTCAAACCATATATGAGACTTG
TGCTCAACCTGATGAACTCTGAGGAAATTGGGGGTGCCAAGTTTCACAAT
CGATGAAGGCAATTTTTATATATTATATAAGTAGAGAAGTCCCTTTCCAA
TTGATTCAGTGTGTGTACAATTTCCAAGTTAATTGATTGTTGCACAAAAG
TGCTGACCAAGGAGGAGAATAAGAATGATACGCTGCTAACAACAACTATG
GAACAATACAGTATATATAAGTAGTGGGCTCAATAACAATAGACCTAAGA
TCTGTTTGGCTTTTTTCATTTCTCCGATGTTCTTGGTATATATCTTTTCC
TTCTGAGTTGTTTATATATATCTTTTCCTTCTGAGTGGCAGCGTCGTTGT
TGATGTTTTGGTATCACAATTGAACACAAACAACGACGCTGCCACCAACT
GCCACGAAAGCAATCTGTCAAATATCTGAATGTTATATTATGATATTTGT
CCATACTATTATTATAGGGGGTGTTGGTAGAAATATGCAGGAGTCATTCT
CAATCTATTAATCTAAATCATATTTGAGTGGCTTTTCTGGAATCATAACC
CTGTCATATTGTCCCTTCTCACCTCTTTAATTGTTTGATTTTCTACCTCT
TGGGTTGCGTAAGTGTCCGATCCGGGTCCCACAAATGCCCGACTTCAATA
GACGCTCAACTCTGAAACAGACTAAGTATACTGATGATACCCCAATATTA
AACTTACTGAGACATGGCCAAAACCAGTACGGCTACGTTTGAAAGGAAGT
GGAGGCCTCGACCTGTGCTGAGGGAGGGTCTGGATCATAACAACCTTTCT
TGCCCAGGGCTGTCACGGATTATCCAGTGTTGGCCACCCTTAGATGCCAA
GGCTCCTACACTACCAGTCTTGGGTTTACCATCTTCCTCTGGTGGGGATC
AAATGGGATAAGCATGATAAGCTGGATTTTGAAGAGTAAATTTTTTTTGT
GCCAACTCATCTTTATCAAAAGTAACTAAGAAAAATTTAAGTTGATGGAA
AAGATAAATAATGGCGCTTCCCAAGTCATACACATGCATACATACGTACA
TCCATACATACATACATGTACATATTATAAACACCACCAGCTGGGGCTCT
GAGCTGTTATTGTATCACCCGAGCTGGGAGTAGTGTGTGCTGGGGGGCTG
TCACTTCGGAAGTGGGTACATAGTGTATTTTGGAGGGTAGGAGTAGGGGG
GCCTGGTAAGTCGAAGGATGGCGTGCAGTTGGAAACCGGTGGAGGCTTTC
TTCACTTTTGGTGATGAATTATCGGGCAACCAAGTTAGAACTCCAGCAGG
GGGTAGCTTTACAGCTCTGAAAGAAAACTTTACTGTGGCTGGTGTACAGG
CGCTGGTCAGGCAGTATGAGTCTTACATGGAAGGGAATTCTGAGAATGAA
GACTGTGTGTGTTTCGGCAAGAGGACTGCGGCGAATGGGTTGGTTCGCCC
AACCAGAATTCTTGGAGATCATCGAAAATCTCCAAGAGCCTTCGAAAGTG
TCGAATGGATCGGGGCTGTTCTGTATTAGGGAGCATGAGGATTTGAACAG
AGTAGAGATTACATCTAAATACTTACTGCACATATTTACAGTCTGAAAAG
ATAGACGTGCTTTCGCTGATTGTACAACCTGGCACCTCATGATCTCAGTG
AGACAGGTAAGTTATAATTTTTTTAATGGTTAGTAGTGACAAAGAACTAT
ACTACTCTTGACTCCTATCCTACATGCAAAAGACTGTGAATTTCGGCCAA
TACCAGGCCACCAGCGGCAGAGGCCGCCGGATTTTTTCATCAGTTCTGCT
GGTACATAGGTGGGAATGGAGTGACGGAGCCCTGACAATTAAATGCCGGG
CTGAACGTTGGAGAGTAAATTTGCGCACACTATCTCATGCATTCTTGGAA
GCAGTTGGATTGAAAAAAATAAGGACGGTTGAAGAAACCACTATTTTTGG
GGCGCTGTTGGAAATACATAGCAGATTTTGATTTGCCAAAACAACAGCAA
GCAGTTACACTGTTCTCAAGAACATGGGGGGAGCAGCAGCAAGGACTATC
ATCACAGCACCACTAAGCAACTCCAACAACACATGTACACGGAGAGGCCT
GCTGTCAGGGCTCCGTCACTCCTTTCTCACCTACCAGCAGAACTGAAGAA
AATCCTGCGGCCTCTGCCGCTGGTGGCCTGGTATTGGCCGAAACTCAGAG
TTTTTTGCATGTAGGATAGGAGTCAAGAGTAGTATAGTTCTTTGTCACTA
ACCACTAAAAAAATTATACCTTACCTGTCTCAATGAGATCATGAGGTGCC
AGGTTGTACAATCACCGAAGGCACGCCTATCTTTTCAGACTGTAAATATG
TGCAGTAAGTATTTAGATATAATTTCAAGAGAGTCTGAGAATCCCTCAAA
CCAATCATAGAGTAGAGATTTGCGAGCAGTATCCGGAGTCGAATGCCCTT
GGACGGAGATTCATCAAGGAGGCGTTTCCCGATGACATGAAAGCCCTCCA
AGCTCTGGCGAGGAGAATCCGCTCGATGCGTCACAATAACAGGCTGTCGA
TGCCTACGTGTTGCAGGCTGTTGTCTTGCAACACCTGCTTGCACTTCAAA
AGAGACCAGAGTATAGGCACATGGCCGACTCGATCCTTGGCGTCATGACA
CTCAAAGAGTGCCAAGCTCCTTTCTCTGGCATCAGGCTGGTGTCTGGGGC
TCCACCTGCTGAAGCTGCTAGTGCTGTCTCCACTGATGCCGAAGGGAGAC
AGCCGGGACGTGGGGCCAGAAGGGCTGCTGATTACGGGAGAAGGAAGGTT
GTTATCTGCTATAGGTGTGGTTCACTTGGGCACACCAACAGCAACAGGGA
CTGCGACAATTGGTTGGTTCATGCCGTGCTGGTTGCCTGGTCCATATATT
ATTATTACCATATTGATCATACATTCAATAGTAAGAGGTGGTACTTAGAA
GTGGAAGGTTCCGCTTGTGGAGGCCGGGGCTTCGCTCCTTGTATTTATCC
GGGCAGCCGGGCCTTAATAAATATATATCAAGTGCTGCTGGTGCAGTCGG
TAGAACGTTCGACTCACATTTGTGAGATCATGATGATGATGATGATGATG
ATTTTGTTTTATTTCAAGTCCACCTCTTGGATAACTACAAGGACCGAAGC
CCCGGCCTCCATATGTGGACCCTGCCACCACTAGTTCCCACTTCTATCCC
CTGGTTCATCACCAAAACTGCAGAAAAGAAAAAGAAAAGAAAGAAAACAG
ACAACCCTGGCCCCAGCCGCACCCCCCTCCCCTGTAGCCGGTCTTCCATG
ATTACCAATTGCACCCCGACCATGTGCCAGTCCCCCCATCAGACATGCTC
TGTTGCCCCCGGAGTGCACCTCGCCCGTTGCAGAAATGTAGCCCCCCAGC
CACTCCCTGGCCAGAACGATGTGACACAGCTTAGAGCCCCACCTGGATCT
TCCAGTCAGCCCACGCACTGTCAATCATCTCCTCTGCGATCCCGTACTGC
TTCAGCAGCTCCTGAAGAAGACCTCCCCTCCCCCACACTGCAACCCCCAC
CCCCGCTGCCCGCTCTGGCGGCAGCACACATGGCACACCCCCACGGGTAT
TTCCTGAAGCGTCCCTGGGGTGACTGATGATGCCACATTTCTTACAAGCC
ACCTCAAATGTCCAGCCATTAGGCTCTTCCATGTGTGGGCGGCACATCCA
GGCCACCAGGGAGGCCCCGCCCAGCTCGCCCTCCCTCTCCCAGCCCTTCC
ATTCCAGCGAGCCGCTCTCCCTGAGCTCCGCTGACCCAATCTTCCCTCCC
CGCGCTAGCTCCTCCAACCCCCCTCCCGTGGCCCCCAGGCAGCCGAGCTG
GTGCCGCCGCCGTCCTGGCCTCTTCATCCCGGCATGCTTGTGTCGCCGCG
GCCCACTCCCGATGTTGACGCAGACGGTCCTGTTCTTCCTCTTTCTTCGC
CCGTATTTCCTGCTCCAGTCTTTTGCTTTCTTTATTCCTCTGTAGATCCC
GCTTATAGCCGCTTGCTCGCTCTCGCCTCAACTAGCTCGAAGCCGCCCTG
TTCTGCCTCCTTTTCCTCCCACTCGCTCCTTTGCCCAGGGAATGTGTCCG
CGCCCCCCTTTCGGTTCCTCTTCAGAGCTAGATCCCGTGTCGTCCCCCAC
TGCTCGATGACTGCGATGAGCTCTCTTCCTCTTCCTTCTCCACCACCACC
TGCCGATGGTCCTCCCCGCCCTCCTCAGCCTTCTCTTCAGCTCTCTTCTG
CTGCTCGGCCCTGCCCCTTAGCTCCATCACTTCCTTTTCCAAAATCTCAG
CCTGCTGCCTGCCCTTGTCCACCGCCGCCTGTAGCTCCCGGCACTTGTCC
ATCGCCGCCAGAGCCTGCTGCGCTTCTTCGTATGAAATTTTCCGCCCTTG
CCCTGGCCTCGTCAAGTATGCTCTCCTCATCTTTCGCCGCCTTCGCTGCC
TGCTCCTTTCGCAGCCGCCGCTTCTCCTTCTGCCGCTGAACTTTCGCTCT
CTTACTACCCTTTAATTGACCATCGCCCCCGGCTTCCTTCACCCCTGGCT
GCTGTGCCTCCCCGGTAGTACTTGCCTCCCCTTGGTTGGAGCTCACTTTG
CCCTCCGAAGACTCATTCCTCCCCGAAGCCGAAGAAGATGAAGATGTTTT
TTTGTCAGCGACGCCAACGGCAACAACGGCGACTGCTGCTGCTGCTGCTG
GTGGTGGTGGTGGTGTATCTTCCCGCCGTTTTTGCTCTTGTTCTTGCTCC
GAATTCCATTGGTGGCCCACGCCCACCTGTTCACCCCCCCTATCTACTGA
CCGTCCAATCGGCCCGTCTCCCCCAATGAACTCATCGTTTTCGATGACAA
TTTTCTCCCCTTTTCTGATGCGCCAAGAAAGTTCCTTTTCTTCCCGTAAT
TCATCATGCTGCTGCTGGTCGAAGCAGCAGCAGGTAGCCAACTTCGAGCT
CCCAAAATGGACTTTCGGCTCAGCTACTGCTGGGCACTGCAGCGACTCCA
CCCCTTCGATCGTGCCGCCATCTTGCTCTACATCATTCACAGCCCCCGGC
GTCGCGAGATTGTCCTCCGAAGATGCCCCTCCTGTGAAAACTGGCGCCTC
AGCTGACAAACTTTGGCCCACCTTGATGCCCCCAGCCCCTGTGTTCCTGT
ATTCCCCCAATGGAGCTCTGCCCTCGAGCTCCCCAAAACTGCCCCGAAGG
CCGCTTTAAGCAGTGACTGTATCCCCACTCACTCCTCCCCAACCCCCACT
TCCACTTCTTTGTTGTGAATCCCAATCCAAACTGCTTGCTCAACCCAAAC
CCAGGGTAGTATACTTGTGTTCCGTTATGTGGTGATGCTCGTAGGGACAC
ATCTGCAAGCCCGGACAATACTGGCCTTGCTCGTCGTACATGCAGCGTAT
CACTGCTGATCCTTTTACTCTGTGTAAAAAAGGACAGCCCCTTCCTTCAT
CGTCGTGTGGGCACAACCCATATTCATAATCCCAGCACAGCCCCTTACCC
CTCACTTGTGGCCCATTGAGTGGTACCTTTTTAAGAACCTTAACAAGCAT
GTTCTAAAATCCCAAATTATTTCCAAAAAGAAGCGGAAGTTATTTGTGAG
ATCATATTTGTGAGATCATCAGTTCAAGCCTGTGTTTCGCCTCTGCCATT
GGGCAACGGCACATTCTGGCACTTGCGGTGTTCTCTGTTTTGTGAAATGA
GGTCTATCGCTTGCCGGCGTTTACTCAGTGAACATTCTTCGGGACTGGAT
ACTAAGTCCAGCCGTCAAAAGTAGACCGTTTAGTCTAGAACATTTAACTT
TTGCTGTGCCTTACCAATGTCAGCCAAACTTTGATCCTTTATTCAGGTTA
ATGTAAGCTACAAGTGACTATCTTCTTGGCCCCTAGCCTTTTGTTTTATC
GTGACCTTGCCCTGCTCAAAGTTGGGGCTGCGAGCTCCTCAGAACCTGCA
CATTGACATAACTCGACACACAAGGAAAATCAACCCATATACTTTTTTAG
TATGAAATGATCAGCTGAATGAGCTCTATCTCATCGTATTCTGAGAACGG
ATGTGTGTGAAGTCTACTACGAGAAAGAAGAGAAGGTAGAAATCGCTATT
CGTTGTCTGAGATCAGCTATGGGTGTTTTTTTTTTCCCTGGCGCCGTTGT
GCTGCTGGTTAGGGTGTGACGTAATACCTCTATGAAACTAAAATTTGTTA
ATTTTCTGAGAGAACTTCGGAAAATGAAATTGCTAGAAATTGTTAAAGTT
TTTCCCCAAATAATGAACTATTGCAGACATCCGCTCGGTTTTGAAATATC
TAAATGAGTTTATTTTTTTCTTTTTCATGACGTTTGATCGACAAACAAGA
TAAAATGAAACATTCAAAATAATTAAACTTTCTTCAAAGGAACTATGCTG
AAGACAAGAATGTCATAAAGTTTATGGATCGTCAACATCAACCCGAGAAA
AATAATAGATGATTCGAACTCGGGGTATAACTCGGCGGGACTTTCATTTT
CCTTCACCTTCTTGTCTTCGGGGGCGGTTGAACACCAAAATTTGTGGCTG
TCAGCGTACTTTGATTCTTCTTCCTCCTTTTCTGAAACTTAACGACCACA
CACGTCATCCGTCATCTTCTTCTTCAATTCTTCTTCGGGGCTCAAATTTC
ATCATCAGGCCCGTCATTCGCCATTCGTATTTGCGAAGGGCATATACGTG
TGACGGAAAAAAAATCTTTCCCCCCACTGCTCTTTCTGTTTTGTGGAGGC
AGATTGTCTCCCTATTCGTCCGAGTGACGACGATGGTTCTTTCTATAGAA
ACCATCTGGTTGATGACTGAGCTTTGTCTCACATCTGTAATACGGGACGT
GAGGTCCGGGGAATTCTGTTAAAACGGTCTACTTTTGACGGCCGGACTTA
GTAATTCTTTGGACCCTGTGAGAATTCTTCAAAAAATTCTCTGGGGGCTG
CGCGGAATGTCCTTGTGTTAGCTGTAGACAATCGATTATCCACGCGAGTG
GCGATTATTAAAGCATGAGCACCACCTACTGTTCATGAGGCCGGTTTGTG
GAAGGTATACTTCCGTAACTTGTACAAGCTTGTAAAACGGGCTAGGGAGG
GGTACTCGTACTCCGAAAGCAGAGGTGGACTGCACCAGTCTTGGTGATAC
CATCTCAACCTGTGGGAAGGAGAAGAAGCACTTGTCGATGGATCATGTGA
GGAGTTGTCGGAAGAAGCGTCTATGTAGTAGAGACAACTGAAAGACTGTA
TGAGGCCACAGGGCAGTAGAACATGTAGGACTTCGCGCAGCTGGGGCTCC
AGGGCCAGTCAGTAGCGAATTGCTGTCCGACGAAGTGTTCAGGTGTCAAG
GCGACCTGCAAGTAGACAGTGGTTGTGGCTCAGGATGTGAGAGGGGCACA
TTGCAAATTAGGAAAATATAAAAAATATATCTCATCATCATCATCCATCA
TCATATACATACTACAGTAAACCGGCTGGTTTTCCCCACCCATTGCTGGC
AACCCATGAATTGTTCACCCGACAAGGCTCCGCGCATATCTTGGGATCCA
CAGATCGTACGGAGATTCAAAAATAAACAGCTTTTGCGGGTGGTCTCGTT
GCGCTGAGCAAAAGCTGTTAAAAACATGAGCAGTAGCCTCACAGAGTGGA
GTGCCAATAAAACAAATATCTCTCATTTAAATTGTATGTCACTCCTAATT
TTTTTTCAAATAAAATATCAATTATAGTATTGGTTTAATTCATGTTAAAG
TATTGCGTCAAAATTATTTTGGCGTGGTGGCGGTAGGCTGTATGAAAAAA
TGTTGAAGTGGAGCAGTGGTGGTAGGCTGCATGAAATGTGTCGCTTCTTC
TGTTTGCTGTTTCTATCCTTGGTAATCAATGCAACAGGATGTCAACTAGC
CACCCTTCTCGAGATGATTGGGGAACCCAGTTAAAGAAAATGCAAGGCAA
GGCAGTACTATTTCGCATGCAAAAACCTGTGTGACACCAGACATGTT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig93:1591476..1602222-

>mRNA_H-akashiwo_Contig93.52.1 ID=mRNA_H-akashiwo_Contig93.52.1|Name=mRNA_H-akashiwo_Contig93.52.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=153bp|location=Sequence derived from alignment at H-akashiwo_Contig93:1591476..1602222- (Heterosigma akashiwo CCMP452)
ATGAGCACAATGATTGAGCTAGCAGAAGGAATATGCGGAGAAGAACTTCA
GTACAGGATGTCAACTAGCCACCCTTCTCGAGATGATTGGGGAACCCAGT
TAAAGAAAATGCAAGGCAAGGCAGTACTATTTCGCATGCAAAAACCTGTG
TGA
back to top