mRNA_H-akashiwo_Contig93.45.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.45.1
Unique NamemRNA_H-akashiwo_Contig93.45.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig93.45.1 vs. uniprot
Match: A0A6V1P5X7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P5X7_HETAK)

HSP 1 Score: 239 bits (610), Expect = 3.830e-73
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 1
Query:    1 NFIGGCHHLRIEVGRWYRVPASARVCRLCDSGSLEDELHILLSCPHFSDQREEMIMKLVREEGGLTSDSDDLMEKLRSQQSVKINLGLYQFLDYVMTEISSAHKEDENFRKEASVFVI 354
            NFIGGCHHLRIEVGRWYRVPASARVCRLCDSGSLEDELHILLSCPHFSDQREEMIMKLVREEGGLT DSDDLMEKLRSQQSVKINLGLYQFLDYVMTEISSAHKEDENFRKEASVFVI
Sbjct:  585 NFIGGCHHLRIEVGRWYRVPASARVCRLCDSGSLEDELHILLSCPHFSDQREEMIMKLVREEGGLTPDSDDLMEKLRSQQSVKINLGLYQFLDYVMTEISSAHKEDENFRKEASVFVI 702          
BLAST of mRNA_H-akashiwo_Contig93.45.1 vs. uniprot
Match: A0A7S4D459_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D459_HETAK)

HSP 1 Score: 167 bits (423), Expect = 4.980e-49
Identity = 76/120 (63.33%), Postives = 100/120 (83.33%), Query Frame = 1
Query:    1 NFIGGCHHLRIEVGRWYRVPASARVCRLCDSGSLEDELHILLSCPHFSDQREEMIMKLVREEGGLT--SDSDDLMEKLRSQQSVKINLGLYQFLDYVMTEISSAHKEDENFRKEASVFVI 354
            NFIGGCHHLR+EVGRW+RVP  ARVCRLCDSGS+EDE+H+LLSC HFSDQRE M++ ++R+EG +   ++ D L+E LRSQ ++K+ LGLY  ++++M +ISSAHKED  FRK ASVF++
Sbjct:  192 NFIGGCHHLRVEVGRWHRVPGPARVCRLCDSGSVEDEMHVLLSCHHFSDQREAMLLSVIRQEGYVAEINNDDALLEILRSQINLKVTLGLYNLMNFIMRDISSAHKEDVIFRKAASVFIL 311          
BLAST of mRNA_H-akashiwo_Contig93.45.1 vs. uniprot
Match: A0A7S4DBC8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBC8_HETAK)

HSP 1 Score: 74.7 bits (182), Expect = 2.730e-13
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 NFIGGCHHLRIEVGRWYRVPASARVCRLCDS--GSLEDELHILLSCPHFSDQREEMIMKL 174
             F+GGCHHLR+EVGRW RVP   RVCR+C S  G +EDE H+L  C  F+ +R  ++ ++
Sbjct:  326 KFLGGCHHLRVEVGRWARVPREFRVCRMCGSEEGLVEDEEHVLFQCERFAAERHSLMSEV 385          
BLAST of mRNA_H-akashiwo_Contig93.45.1 vs. uniprot
Match: A0A8B6F3B6_MYTGA (Reverse transcriptase domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6F3B6_MYTGA)

HSP 1 Score: 58.5 bits (140), Expect = 1.450e-7
Identity = 23/54 (42.59%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   13 GCHHLRIEVGRWYRVPASARVCRLCDSGSLEDELHILLSCPHFSDQREEMIMKL 174
            G   L IE GR+  +P + R+C+LC+SGS+EDE H L+ C  ++D R  ++ +L
Sbjct:  468 GTFPLEIEQGRYRNIPPNLRICKLCNSGSIEDETHFLIYCDRYTDARNRLLREL 521          
BLAST of mRNA_H-akashiwo_Contig93.45.1 vs. uniprot
Match: A0A6S7HUA2_PARCT (Uncharacterized protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HUA2_PARCT)

HSP 1 Score: 57.0 bits (136), Expect = 1.690e-7
Identity = 30/88 (34.09%), Postives = 52/88 (59.09%), Query Frame = 1
Query:   19 HHLRIEVGRWYRVPASARVCRLCDSGSLEDELHILLSCPHFSDQREEMIMKLVR---EEGGLTSD--SDDLMEKLRSQQSVKINLGLY 267
            H+L+IE+GR+  +    R+C++C+SG +E+E+H+LLSC  +   R  +   L     +E  L S   S DLM+   S+  +K++  +Y
Sbjct:   85 HNLQIEIGRYQNILREERLCKICNSGEVENEIHLLLSCKAYEQSRANLRSSLENASSDEINLNSQTLSADLMKSTDSEIIIKLSKFVY 172          
BLAST of mRNA_H-akashiwo_Contig93.45.1 vs. uniprot
Match: A0A7D9HTN7_PARCT (Uncharacterized protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HTN7_PARCT)

HSP 1 Score: 57.8 bits (138), Expect = 2.520e-7
Identity = 31/88 (35.23%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   19 HHLRIEVGRWYRVPASARVCRLCDSGSLEDELHILLSCPHFSDQREEMIMKLVR---EEGGLTSD--SDDLMEKLRSQQSVKINLGLY 267
            H L+IE+GR+  +P   R+C++C+SG +E+E H+LLSC  +   R  +   L     +E  L S   S DLM+   S+   K++  +Y
Sbjct:  281 HDLQIEIGRYQNIPREERLCKICNSGEVENETHLLLSCKAYEQSRANLRSSLENASSDEINLNSQTLSADLMKSTDSEIITKLSKFVY 368          
BLAST of mRNA_H-akashiwo_Contig93.45.1 vs. uniprot
Match: A0A8H8XKJ8_9GAMM (Reverse transcriptase domain-containing protein n=4 Tax=Bathymodiolus brooksi thiotrophic gill symbiont TaxID=1052209 RepID=A0A8H8XKJ8_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 2.820e-7
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 1
Query:   19 HHLRIEVGRWYRVPASARVCRLCDSGSLEDELHILLSCPHFSDQREEM 162
            H L IE GR+  +P   R+C  CDSG +EDE+H LL C  F ++R+++
Sbjct:  829 HRLHIETGRYQGIPPHQRLCEQCDSGEVEDEIHFLLCCSKFREERQQL 876          
BLAST of mRNA_H-akashiwo_Contig93.45.1 vs. uniprot
Match: A0A7D9I838_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I838_PARCT)

HSP 1 Score: 57.0 bits (136), Expect = 3.660e-7
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   19 HHLRIEVGRWYRVPASARVCRLCDSGSLEDELHILLSCPHFSDQREEMIMKLVR---EEGGLTSD--SDDLMEKLRSQQSVKINLGLY 267
            H+L+IE+GR+  +P   R+C++C+SG +E+E H+LLSC  +   R  +   L     +E  L S   S DLM+    +   K++  +Y
Sbjct:  172 HNLQIEIGRYQNIPREERLCKICNSGEVENETHLLLSCKAYEQSRANLRSSLENASSDEINLNSQTLSADLMKSTDGEIITKLSKVVY 259          
BLAST of mRNA_H-akashiwo_Contig93.45.1 vs. uniprot
Match: A0A6S7I5L0_PARCT (Reverse transcriptase domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I5L0_PARCT)

HSP 1 Score: 57.4 bits (137), Expect = 3.910e-7
Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   19 HHLRIEVGRWYRVPASARVCRLCDSGSLEDELHILLSCPHFSDQREEMIMKLVR---EEGGLTSD--SDDLMEKLRSQQSVKINLGLY 267
            H L+IE+GR+  +P   R+C++C+SG +E E H+LLSC  +   R  +   L     +E  L S   S DLM+   S+   K++  +Y
Sbjct: 1068 HDLQIEIGRYQNIPREERLCKICNSGEVESETHLLLSCKAYEQSRANLRSSLENASSDEINLNSQTLSADLMKSTDSEIITKLSKFVY 1155          
BLAST of mRNA_H-akashiwo_Contig93.45.1 vs. uniprot
Match: A0A6S7IUF0_PARCT (Reverse transcriptase domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IUF0_PARCT)

HSP 1 Score: 56.2 bits (134), Expect = 9.920e-7
Identity = 31/104 (29.81%), Postives = 51/104 (49.04%), Query Frame = 1
Query:   19 HHLRIEVGRWYRVPASARVCRLCDSGSLEDELHILLSCPHFSDQREEM--IMKLVREEGGLTSDSDDLMEKLRSQQSVKINLGLYQFLDYVMTEISSAHKEDEN 324
            H L IE GR+  +P   R+C+LC+SG +EDE H+  +C  +   R     I+K   +    +     L+E L S   + +     +F+   +TE  ++ K  EN
Sbjct: 1068 HKLEIEYGRYKNIPREQRLCKLCNSGEVEDEFHVAFACKTYETLRNNTNDILKDFFQLSTTSQTKQKLLEHLMSSNDIVLINLFSKFISLCLTERENSLKPMEN 1171          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6V1P5X7_HETAK3.830e-7399.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4D459_HETAK4.980e-4963.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DBC8_HETAK2.730e-1351.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8B6F3B6_MYTGA1.450e-742.59Reverse transcriptase domain-containing protein n=... [more]
A0A6S7HUA2_PARCT1.690e-734.09Uncharacterized protein n=3 Tax=Paramuricea clavat... [more]
A0A7D9HTN7_PARCT2.520e-735.23Uncharacterized protein n=3 Tax=Paramuricea clavat... [more]
A0A8H8XKJ8_9GAMM2.820e-745.83Reverse transcriptase domain-containing protein n=... [more]
A0A7D9I838_PARCT3.660e-734.09Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6S7I5L0_PARCT3.910e-735.23Reverse transcriptase domain-containing protein n=... [more]
A0A6S7IUF0_PARCT9.920e-729.81Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:1413479..1413835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog10224.XP_006822879.1
PFAMsVCBS
Model size358
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.83e-05
EggNOG OGs2CMU7@1|root,2QRZ6@2759|Eukaryota,39TII@33154|Opisthokonta,3BN0N@33208|Metazoa,3D9FS@33213|Bilateria
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388047.9263945-CDS-H-akashiwo_Contig93:1413478..14138351681388047.9263945-CDS-H-akashiwo_Contig93:1413478..1413835Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 1413479..1413835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.45.1prot_H-akashiwo_Contig93.45.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 1413479..1413835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.45.1

>prot_H-akashiwo_Contig93.45.1 ID=prot_H-akashiwo_Contig93.45.1|Name=mRNA_H-akashiwo_Contig93.45.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=119bp
NFIGGCHHLRIEVGRWYRVPASARVCRLCDSGSLEDELHILLSCPHFSDQ
REEMIMKLVREEGGLTSDSDDLMEKLRSQQSVKINLGLYQFLDYVMTEIS
SAHKEDENFRKEASVFVI*
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mRNA from alignment at H-akashiwo_Contig93:1413479..1413835+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.45.1 ID=mRNA_H-akashiwo_Contig93.45.1|Name=mRNA_H-akashiwo_Contig93.45.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=357bp|location=Sequence derived from alignment at H-akashiwo_Contig93:1413479..1413835+ (Heterosigma akashiwo CCMP452)
AATTTCATTGGTGGTTGTCATCATCTGAGAATAGAGGTGGGCAGATGGTA TCGGGTACCCGCGTCAGCTAGAGTGTGTCGCCTGTGTGACTCGGGCAGCC TGGAGGATGAACTACACATTTTGCTCAGTTGCCCCCATTTTTCAGATCAG CGTGAGGAGATGATTATGAAACTAGTCAGAGAAGAAGGGGGGCTTACCTC AGACAGCGATGACCTTATGGAGAAGCTTCGGTCTCAACAATCTGTAAAGA TCAATTTGGGTTTGTACCAGTTTTTGGACTATGTCATGACAGAGATCAGT TCAGCACACAAAGAGGATGAAAACTTTAGAAAAGAAGCCAGTGTTTTCGT GATATAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig93:1413479..1413835+

>mRNA_H-akashiwo_Contig93.45.1 ID=mRNA_H-akashiwo_Contig93.45.1|Name=mRNA_H-akashiwo_Contig93.45.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=357bp|location=Sequence derived from alignment at H-akashiwo_Contig93:1413479..1413835+ (Heterosigma akashiwo CCMP452)
AATTTCATTGGTGGTTGTCATCATCTGAGAATAGAGGTGGGCAGATGGTA
TCGGGTACCCGCGTCAGCTAGAGTGTGTCGCCTGTGTGACTCGGGCAGCC
TGGAGGATGAACTACACATTTTGCTCAGTTGCCCCCATTTTTCAGATCAG
CGTGAGGAGATGATTATGAAACTAGTCAGAGAAGAAGGGGGGCTTACCTC
AGACAGCGATGACCTTATGGAGAAGCTTCGGTCTCAACAATCTGTAAAGA
TCAATTTGGGTTTGTACCAGTTTTTGGACTATGTCATGACAGAGATCAGT
TCAGCACACAAAGAGGATGAAAACTTTAGAAAAGAAGCCAGTGTTTTCGT
GATATAA
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