mRNA_H-akashiwo_Contig93.35.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.35.1
Unique NamemRNA_H-akashiwo_Contig93.35.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig93.35.1 vs. uniprot
Match: A0A7S3UYP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYP9_HETAK)

HSP 1 Score: 495 bits (1274), Expect = 3.090e-176
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = -3
Query:   28 VFNQIASIPEDATHLALSVGGNDGLHYLGELMNRRCLLCNLIPAIINFGSFIRSKYSRLLDALQEDGRPLMLCTIYHPHFDHPLMSIIARIGINIAAGVILSEGKRRGLPVIDLRKVFTQVRDYANPIEPGVPGGDKLSENLIHVLNSHDFAAGRHRVYHSTDYSVPELSDWKVNESRYFPENCWSERANGWQRPMKRIQTAQKKLKGGKKKGLRDKAENDPFRGANQAQALRQRNREGSF 750
            VFNQIASIPEDATHLALSVGGNDGLHYLGELMNRRCLLCNLIPAIINFGSFIRSKYSRLLDALQEDGRPLMLCTIYHPHFDHPLMSIIARIGINIAAGVILSEGKRRGLPVIDLRKVFTQVRDYANPIEPGVPGGDKLSENLIHVLNSHDFAAGRHRVYHSTDYSVPELSDWKVNESRYFPENCWSERANGWQRPMKRIQTAQKKLKGGKKKGLRDKAENDPFRGANQAQALRQRNREGSF
Sbjct:   54 VFNQIASIPEDATHLALSVGGNDGLHYLGELMNRRCLLCNLIPAIINFGSFIRSKYSRLLDALQEDGRPLMLCTIYHPHFDHPLMSIIARIGINIAAGVILSEGKRRGLPVIDLRKVFTQVRDYANPIEPGVPGGDKLSENLIHVLNSHDFAAGRHRVYHSTDYSVPELSDWKVNESRYFPENCWSERANGWQRPMKRIQTAQKKLKGGKKKGLRDKAENDPFRGANQAQALRQRNREGSF 294          
BLAST of mRNA_H-akashiwo_Contig93.35.1 vs. uniprot
Match: A0A814QMF6_9BILA (Hypothetical protein n=4 Tax=Rotaria TaxID=231623 RepID=A0A814QMF6_9BILA)

HSP 1 Score: 119 bits (297), Expect = 3.140e-29
Identity = 58/151 (38.41%), Postives = 87/151 (57.62%), Query Frame = -3
Query:  298 VFNQIASIPEDATHLALSVGGNDGLHYLGELMNRRCLLCNLIPAIINFGSFIRSKYSRLLDALQEDGRPLMLCTIYHPHFDHPLMSIIARIGINIAAGVILSEGKRRGLPVIDLRKVFTQVRDYANPIEPGVPGGDKLSENLIHVLNSHDF 750
            V NQI S+P DATHL +S+GGN+ L Y+  L      +   +  +          Y  +L+ L     P+  CTIY+P FD      +   G++    VI++E  + G+PVIDL+ +F   +DYAN IEPGV GG+K+ EN+++V+N+H F
Sbjct:   57 VANQIQSVPRDATHLFISIGGNNALSYMHHLSASVHNVGEALLTLTKIKKKFEKDYIDMLEKLIALKIPVTTCTIYNPRFDDSHQQAMCETGLSALNDVIVTESTKLGIPVIDLKTIFNDPKDYANSIEPGVRGGEKIVENILYVVNNHRF 207          
BLAST of mRNA_H-akashiwo_Contig93.35.1 vs. uniprot
Match: A0A815B1X4_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815B1X4_9BILA)

HSP 1 Score: 118 bits (296), Expect = 4.190e-29
Identity = 56/151 (37.09%), Postives = 88/151 (58.28%), Query Frame = -3
Query:  298 VFNQIASIPEDATHLALSVGGNDGLHYLGELMNRRCLLCNLIPAIINFGSFIRSKYSRLLDALQEDGRPLMLCTIYHPHFDHPLMSIIARIGINIAAGVILSEGKRRGLPVIDLRKVFTQVRDYANPIEPGVPGGDKLSENLIHVLNSHDF 750
            +  Q+  IP+DATHL +S+GGND L Y+  L      +   +  +          Y+ +L  + E   P   CTIY+P+FD+P    +   G+++   VI++E  +RG+PVIDL+ +F   +DYAN IEP V GG K+ EN+++V++ H F
Sbjct:   57 ISTQLTRIPQDATHLFISIGGNDALSYMQLLRKSVQNVGEGLMLLSESNKQFEKDYAEMLKHVSECKIPTTTCTIYNPNFDNPEQQRMCETGLSVLNHVIITESIKRGIPVIDLKTIFNDPKDYANHIEPDVQGGSKIVENILYVIDHHRF 207          
BLAST of mRNA_H-akashiwo_Contig93.35.1 vs. uniprot
Match: A0A814J8D3_9BILA (Hypothetical protein n=6 Tax=Rotaria TaxID=231623 RepID=A0A814J8D3_9BILA)

HSP 1 Score: 117 bits (293), Expect = 1.320e-28
Identity = 56/166 (33.73%), Postives = 90/166 (54.22%), Query Frame = -3
Query:  253 VFNQIASIPEDATHLALSVGGNDGLHYLGELMNRRCLLCNLIPAIINFGSFIRSKYSRLLDALQEDGRPLMLCTIYHPHFDHPLMSIIARIGINIAAGVILSEGKRRGLPVIDLRKVFTQVRDYANPIEPGVPGGDKLSENLIHVLNSHDFAAGRHRVYHSTDYSV 750
            +  Q+  IP+DATHL +S+GGND L Y+  L      +   +  +  F +     Y  +L  +     P  +CT+Y P+F++P    I   G+++   VI++E  + G+P+IDL  +F   +DYAN IEP V GG K+ EN++HV++ H F      +Y     S+
Sbjct:   57 ISTQLTRIPQDATHLFISIGGNDALCYMQRLKESVQNVGEALILLSEFKNEFEKDYIEMLKHVTTHKIPTTICTMYKPNFENPQQQRICETGLSVLNDVIITESIKLGIPIIDLTTIFNDPKDYANHIEPDVQGGSKIVENILHVMDHHRFNENICSIYAKGSKSI 222          
BLAST of mRNA_H-akashiwo_Contig93.35.1 vs. uniprot
Match: A0A8J7AXK7_9CYAN (SGNH/GDSL hydrolase family protein n=1 Tax=Lusitaniella coriacea LEGE 07157 TaxID=945747 RepID=A0A8J7AXK7_9CYAN)

HSP 1 Score: 116 bits (290), Expect = 2.580e-28
Identity = 57/160 (35.62%), Postives = 88/160 (55.00%), Query Frame = -3
Query:  271 VFNQIASIPEDATHLALSVGGNDGLHYLGELMNRRCLLCNLIPAIINFGSFIRSKYSRLLDALQEDGRPLMLCTIYHPHFDHPLMSIIARIGINIAAGVILSEGKRRGLPVIDLRKVFTQVRDYANPIEPGVPGGDKLSENLIHVLNSHDFAAGRHRVYH 750
            V+ Q+ +IPEDATHL LS+GGN+ L ++  L  R      +   + +       +Y +LL  +     P  LCTIY+P     L   IA   +     VI+ +  + G+P+IDLR    + RDYANPIEP   GG+K+++ +++V+  HDF     +V+H
Sbjct:   51 VYAQLKTIPEDATHLILSIGGNNALSHISILDERVASSAEVFSNLADISEQFEQQYQKLLQKILSLNLPTTLCTIYNPRHPEKLYQRIAVAALATFNDVIIRQAFQAGIPLIDLRLTCNEARDYANPIEPSATGGEKIADAILNVVLEHDFRKPNTQVFH 210          
BLAST of mRNA_H-akashiwo_Contig93.35.1 vs. uniprot
Match: A0A818ZGQ3_9BILA (Hypothetical protein n=3 Tax=Rotaria TaxID=231623 RepID=A0A818ZGQ3_9BILA)

HSP 1 Score: 116 bits (290), Expect = 3.080e-28
Identity = 55/151 (36.42%), Postives = 87/151 (57.62%), Query Frame = -3
Query:  298 VFNQIASIPEDATHLALSVGGNDGLHYLGELMNRRCLLCNLIPAIINFGSFIRSKYSRLLDALQEDGRPLMLCTIYHPHFDHPLMSIIARIGINIAAGVILSEGKRRGLPVIDLRKVFTQVRDYANPIEPGVPGGDKLSENLIHVLNSHDF 750
            + +Q+  IP+DATHL +S+GGND L Y+  L      +   +  + +F       YS +L  +     P  +CT+Y+P+F++P    +   G+     VI++E  + G+PVIDL+ +F    DYAN IEP V GG K+ EN++HV++ H F
Sbjct:   57 ISSQLTRIPQDATHLFISIGGNDALCYMQRLKESVANVGEGLLLLSDFKREFEKDYSAMLKIVSARKIPATVCTMYNPNFENPEQQRMCETGLCALNDVIITESTKIGIPVIDLKTIFNDPNDYANHIEPDVQGGSKIVENILHVMDHHRF 207          
BLAST of mRNA_H-akashiwo_Contig93.35.1 vs. uniprot
Match: A0A5B2VHZ5_9HYPH (SGNH/GDSL hydrolase family protein n=1 Tax=Salinarimonas soli TaxID=1638099 RepID=A0A5B2VHZ5_9HYPH)

HSP 1 Score: 115 bits (288), Expect = 5.230e-28
Identity = 58/159 (36.48%), Postives = 81/159 (50.94%), Query Frame = -3
Query:  274 VFNQIASIPEDATHLALSVGGNDGLHYLGELMNRRCLLCNLIPAIINFGSFIRSKYSRLLDALQEDGRPLMLCTIYHPHFDHPLMSIIARIGINIAAGVILSEGKRRGLPVIDLRKVFTQVRDYANPIEPGVPGGDKLSENLIHVLNSHDFAAGRHRVY 750
            V  Q+  IP +ATHL +SVGGND L + G    R   +   +  +          Y  +LDA+   G P ++CTIY P F  PL   +A +G+ +    IL     RG+PV+DLR V     D+ANPIEP   GGDK++  +   +  H F   R  V+
Sbjct:   51 VARQLERIPAEATHLVVSVGGNDALRHTGAFQERAGTVGEALARVGGIVRGFAGDYDSMLDAVTARGLPTIVCTIYDPRFPDPLQRRLAILGLALCNDAILRAATARGVPVLDLRLVCDADEDFANPIEPSTKGGDKIAAAIARAVTEHSFGRRRTEVF 209          
BLAST of mRNA_H-akashiwo_Contig93.35.1 vs. uniprot
Match: A0A814Y7H4_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A814Y7H4_ADIRI)

HSP 1 Score: 115 bits (288), Expect = 5.780e-28
Identity = 59/162 (36.42%), Postives = 86/162 (53.09%), Query Frame = -3
Query:  265 VFNQIASIPEDATHLALSVGGNDGLHYLGELMNRRCLLCNLIPAIINFGSFIRSKYSRLLDALQEDGRPLMLCTIYHPHFDHPLMSIIARIGINIAAGVILSEGKRRGLPVIDLRKVFTQVRDYANPIEPGVPGGDKLSENLIHVLNSHDFAAGRHRVYHST 750
            +  QI  IP+DATHL +S+GGN+ L Y+  L  R   +   +  +          Y  +L  L+    P+  CTIY+P F      I    G++    VI++E  + G+PVIDL+ +F    DYAN IEPGV GG K+ EN+++V+N H F      +Y  T
Sbjct:   52 ITQQITRIPKDATHLFVSIGGNNALSYMHHLNERVTTVGQALLVLSKIKKQFEKDYRHMLSELKALKIPVTTCTIYNPCFPESGEQISCETGLSALNDVIVTESSKLGIPVIDLKTIFNDRNDYANAIEPGVQGGAKIVENIVYVVNHHRFDENICSIYAKT 213          
BLAST of mRNA_H-akashiwo_Contig93.35.1 vs. uniprot
Match: A0A821EHZ5_9BILA (Hypothetical protein n=4 Tax=unclassified Rotaria TaxID=2631648 RepID=A0A821EHZ5_9BILA)

HSP 1 Score: 115 bits (288), Expect = 6.550e-28
Identity = 52/151 (34.44%), Postives = 85/151 (56.29%), Query Frame = -3
Query:  298 VFNQIASIPEDATHLALSVGGNDGLHYLGELMNRRCLLCNLIPAIINFGSFIRSKYSRLLDALQEDGRPLMLCTIYHPHFDHPLMSIIARIGINIAAGVILSEGKRRGLPVIDLRKVFTQVRDYANPIEPGVPGGDKLSENLIHVLNSHDF 750
            +  Q+  IP+DATHL +S+GGND L Y+  L      +   +  +  F       Y  +L  +     P  +CT+Y P+F+ P   ++   G+++   VI++E  + G+PVIDL+ +F    DYAN IEP V GG K+ EN++++++ H F
Sbjct:   57 ISTQLTRIPQDATHLFISIGGNDALSYMQRLQESVQNVGEALIILSEFEKNFEKDYIEMLKHVSACKIPTTICTMYKPNFNIPQQQLMCETGLSVLNDVIITEATKLGIPVIDLKTIFNDPEDYANHIEPDVQGGSKIVENIVYIMDHHRF 207          
BLAST of mRNA_H-akashiwo_Contig93.35.1 vs. uniprot
Match: UPI0018DFFC2B (SGNH/GDSL hydrolase family protein n=1 Tax=Roseomonas sp. KE2513 TaxID=2479202 RepID=UPI0018DFFC2B)

HSP 1 Score: 116 bits (290), Expect = 7.490e-28
Identity = 59/159 (37.11%), Postives = 86/159 (54.09%), Query Frame = -3
Query:  274 VFNQIASIPEDATHLALSVGGNDGLHYLGELMNRRCLLCNLIPAIINFGSFIRSKYSRLLDALQEDGRPLMLCTIYHPHFDHPLMSIIARIGINIAAGVILSEGKRRGLPVIDLRKVFTQVRDYANPIEPGVPGGDKLSENLIHVLNSHDFAAGRHRVY 750
            V  Q+A +P +ATHL +SVGGNDGL   G        +      + +     R  Y  +LDA+   G P  LCT+Y P F  PL   +A  G+ +   VI+     RGLP++DLR + ++  D+ANPIEP   GG K++  ++H+L+ HDF      V+
Sbjct:   90 VPRQLARVPAEATHLVVSVGGNDGLRQEGVFQQAARSVGEGAARLADVRERFRQDYRAMLDAVLARGLPTALCTVYDPRFPDPLRQRLALAGLALFNDVIIRAAFSRGLPLLDLRLICSEDADFANPIEPSGQGGGKIAGAILHLLSEHDFGRQHPEVF 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UYP9_HETAK3.090e-176100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A814QMF6_9BILA3.140e-2938.41Hypothetical protein n=4 Tax=Rotaria TaxID=231623 ... [more]
A0A815B1X4_9BILA4.190e-2937.09Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A814J8D3_9BILA1.320e-2833.73Hypothetical protein n=6 Tax=Rotaria TaxID=231623 ... [more]
A0A8J7AXK7_9CYAN2.580e-2835.63SGNH/GDSL hydrolase family protein n=1 Tax=Lusitan... [more]
A0A818ZGQ3_9BILA3.080e-2836.42Hypothetical protein n=3 Tax=Rotaria TaxID=231623 ... [more]
A0A5B2VHZ5_9HYPH5.230e-2836.48SGNH/GDSL hydrolase family protein n=1 Tax=Salinar... [more]
A0A814Y7H4_ADIRI5.780e-2836.42Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
A0A821EHZ5_9BILA6.550e-2834.44Hypothetical protein n=4 Tax=unclassified Rotaria ... [more]
UPI0018DFFC2B7.490e-2837.11SGNH/GDSL hydrolase family protein n=1 Tax=Roseomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:1122981..1123732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size753
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388046.8670385-CDS-H-akashiwo_Contig93:1122980..11233911681388046.8670385-CDS-H-akashiwo_Contig93:1122980..1123391Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 1122981..1123391 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388046.8781466-UTR-H-akashiwo_Contig93:1123391..11237321681388046.8781466-UTR-H-akashiwo_Contig93:1123391..1123732Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig93 1123392..1123732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.35.1prot_H-akashiwo_Contig93.35.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 1122981..1123391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.35.1

>prot_H-akashiwo_Contig93.35.1 ID=prot_H-akashiwo_Contig93.35.1|Name=mRNA_H-akashiwo_Contig93.35.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=137bp
GRRKKHSALKAAFSISLAQRLGLVCTPEGVIFSLVSQTLLLSPLQLLLCR
LDPFHGSLPSVCTLRPTVFGEVPGLVDLPVAELWNRIVCAVINSVAPCCK
VVAIQHMDEVLAQLITPWYTWLNRISIVPDLSKDLP*
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mRNA from alignment at H-akashiwo_Contig93:1122981..1123732+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.35.1 ID=mRNA_H-akashiwo_Contig93.35.1|Name=mRNA_H-akashiwo_Contig93.35.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=752bp|location=Sequence derived from alignment at H-akashiwo_Contig93:1122981..1123732+ (Heterosigma akashiwo CCMP452)
GGGAGACGCAAAAAACACTCGGCACTAAAAGCTGCCTTCTCTATTTCTTT GGCGCAGCGCCTGGGCCTGGTTTGCACCCCTGAAGGGGTCATTTTCAGCC TTGTCTCTCAGACCCTTCTTCTTTCCCCCCTTCAGCTTCTTCTGTGCCGT CTGGATCCTTTTCATGGGTCTTTGCCATCCGTTTGCACGCTCAGACCAAC AGTTTTCGGGGAAGTACCGGGACTCGTTGACCTTCCAGTCGCTGAGCTCT GGAACAGAATAGTCTGTGCTGTGATAAACTCTGTGGCGCCCTGCTGCAAA GTCGTGGCTATTCAGCACATGGATGAGGTTCTCGCTCAACTTATCACCCC CTGGTACACCTGGCTCAATCGGATTAGCATAGTCCCTGACCTGAGTAAAG ACCTTCCGTAGGTCTATGACAGGAAGGCCTCTCCGCTTGCCCTCAGATAG AATCACCCCCGCGGCAATGTTAATCCCAATCCGGGCAATAATGCTCATCA AGGGGTGATCAAAATGAGGGTGGTAGATGGTGCACAGCATGAGAGGTCTC CCGTCTTCTTGCAGGGCATCCAAGAGCCTGGAATACTTCGATCGGATGAA AGAGCCAAAGTTGATTATTGCCGGGATTAGATTGCACAATAAACACCGCC TGTTCATCAGTTCGCCGAGATAATGGAGCCCATCGTTACCTCCAACTGAT AGAGCTAAGTGCGTAGCGTCCTCCGGGATGGAGGCAATCTGGTTGAAAAC CC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig93:1122981..1123732+

>mRNA_H-akashiwo_Contig93.35.1 ID=mRNA_H-akashiwo_Contig93.35.1|Name=mRNA_H-akashiwo_Contig93.35.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=411bp|location=Sequence derived from alignment at H-akashiwo_Contig93:1122981..1123732+ (Heterosigma akashiwo CCMP452)
GGGAGACGCAAAAAACACTCGGCACTAAAAGCTGCCTTCTCTATTTCTTT
GGCGCAGCGCCTGGGCCTGGTTTGCACCCCTGAAGGGGTCATTTTCAGCC
TTGTCTCTCAGACCCTTCTTCTTTCCCCCCTTCAGCTTCTTCTGTGCCGT
CTGGATCCTTTTCATGGGTCTTTGCCATCCGTTTGCACGCTCAGACCAAC
AGTTTTCGGGGAAGTACCGGGACTCGTTGACCTTCCAGTCGCTGAGCTCT
GGAACAGAATAGTCTGTGCTGTGATAAACTCTGTGGCGCCCTGCTGCAAA
GTCGTGGCTATTCAGCACATGGATGAGGTTCTCGCTCAACTTATCACCCC
CTGGTACACCTGGCTCAATCGGATTAGCATAGTCCCTGACCTGAGTAAAG
ACCTTCCGTAG
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