mRNA_H-akashiwo_Contig93.34.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.34.1
Unique NamemRNA_H-akashiwo_Contig93.34.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig93.34.1 vs. uniprot
Match: A0A6S9IIF0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IIF0_HETAK)

HSP 1 Score: 412 bits (1058), Expect = 3.220e-143
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 3 
Query:    3 AALNRRDVWFSAFHALFAFLILICGIVIAAGGSSYQESTGGTYIFIGLLSLAKDVVGFITGWKLPPPTPGCPLGNPWSCTYLSISITVTVINGILLFLWSMWVMPSELDGLGGAASFACFLLWVIFISSIVQESCLCCGNSCNNKQAIQQGAGAPTMVIALPIHQAQQPGVPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPQPPGYYSQGQPRPQQNTNSNNPLVINKEFGGAV 797
            AALNRRDVWFSAFHALFAFLILICGIVIAAGGSSYQESTGGTYIFIGLLSLAKDVVGFITGWKLPPPTPGCPLGNPWSCTYLSISITVTVINGILLFLWSMWVMPSELDGLGGAASFACFLLWVIFISSIVQESCLCCGNSCNNKQAIQQGAGAPTMVIALPIHQAQQPGVPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPQPPGYYSQGQPRPQQNTNSNNPLVINKEFGGAV
Sbjct:    2 AALNRRDVWFSAFHALFAFLILICGIVIAAGGSSYQESTGGTYIFIGLLSLAKDVVGFITGWKLPPPTPGCPLGNPWSCTYLSISITVTVINGILLFLWSMWVMPSELDGLGGAASFACFLLWVIFISSIVQESCLCCGNSCNNKQAIQQGAGAPTMVIALPIHQAQQPGVPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPQPPGYYSQGQPRPQQNTNSNNPLVINKEFGGAV 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6S9IIF0_HETAK3.220e-143100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:1077268..1079408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size849
Hectar predicted targeting categorysignal peptide
Exons5
Cds size498
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.34.1prot_H-akashiwo_Contig93.34.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 1077703..1079359 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388046.387478-UTR-H-akashiwo_Contig93:1077267..10774081681388046.387478-UTR-H-akashiwo_Contig93:1077267..1077408Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig93 1077268..1077408 +
1681388046.3980331-UTR-H-akashiwo_Contig93:1077541..10777021681388046.3980331-UTR-H-akashiwo_Contig93:1077541..1077702Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig93 1077542..1077702 +
1681388046.4474194-UTR-H-akashiwo_Contig93:1079359..10794081681388046.4474194-UTR-H-akashiwo_Contig93:1079359..1079408Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig93 1079360..1079408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388046.4076395-CDS-H-akashiwo_Contig93:1077702..10777191681388046.4076395-CDS-H-akashiwo_Contig93:1077702..1077719Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 1077703..1077719 +
1681388046.4174573-CDS-H-akashiwo_Contig93:1077902..10780361681388046.4174573-CDS-H-akashiwo_Contig93:1077902..1078036Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 1077903..1078036 +
1681388046.4278188-CDS-H-akashiwo_Contig93:1078382..10785411681388046.4278188-CDS-H-akashiwo_Contig93:1078382..1078541Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 1078383..1078541 +
1681388046.4384909-CDS-H-akashiwo_Contig93:1079171..10793591681388046.4384909-CDS-H-akashiwo_Contig93:1079171..1079359Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 1079172..1079359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.34.1

>prot_H-akashiwo_Contig93.34.1 ID=prot_H-akashiwo_Contig93.34.1|Name=mRNA_H-akashiwo_Contig93.34.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=166bp
MWVMPSELDGLGGAASFACFLLWVIFISSIVQESCLCCGNSCNNKQAIQQ
GAGAPTMVIALPIHQAQQPGVPGGGGGGPVMMVPTVVSPGGGGLPHTQVV
VATGVPAGGAVTGPAAGGGQYYPQQQQQQPAPQPPGYYSQGQPRPQQNTN
SNNPLVINKEFGGAV*
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mRNA from alignment at H-akashiwo_Contig93:1077268..1079408+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.34.1 ID=mRNA_H-akashiwo_Contig93.34.1|Name=mRNA_H-akashiwo_Contig93.34.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2141bp|location=Sequence derived from alignment at H-akashiwo_Contig93:1077268..1079408+ (Heterosigma akashiwo CCMP452)
TGGCTGCTCTCAATAGAAGAGATGTCTGGTTCAGTGCTTTCCACGCTTTG
TTTGCTTTTCTTATCTTGATTTGTGGGATTGTAATAGCCGCTGGTGGCTC
ATCATATCAAGAGAGCACAGGCGGAACTTATATATTCATTGGTTGGTATG
CAACCCCCAACAGTAGAACATGAAATCGAATAACATGATGCCGACCAAAG
CCATATTTTTCAGATGATTTCTAACTTCATCCAATCAAGCATTCTCTGTG
AAAACTATATGCAATGCTTCTCAGGTTTACTGTCCTTGGCCAAAGATGTT
GTGGGTTTTATCACAGGCTGGAAGCTGCCCCCACCAACACCTGGTTGCCC
TTTGGGTAATCCTTGGTCTTGCACCTATCTATCAATTTCAATCACTGTAA
CAGTCATCAACGGAATCCTTCTATTTTTATGGTCAATGTGGGTGATGCCA
AGGTATGCCTGACCACAGCACAGCCCTGTGACTCAAGTCTAAATTTGTGG
CAGTTTGCATTGTTGGTTTAAATTTATACTACTTGTGACCGGCGCGCTGA
TGATTATTGTTCCCATCATGCTTTTCTCCTTGCTCTGCTTGTCTTGCATT
ATTTTTTGCTCCTCCTTCATTCACTGTGATGAAAGTGAATTGGATGGACT
TGGGGGAGCTGCAAGCTTTGCCTGCTTTCTTCTTTGGGTAATTTTCATCT
CAAGCATTGTTCAGGAGTCCTGTTTGTGCTGTGGTAATAGCTGCAACAAC
AAACAGGCAATTCAACAAGGTAAATATGAGGGCATGATGATATATTGAAT
TGGAATTTCCTGAAACATTTCTTCTTAGTAGCACAGGAGAGATTACCCCT
TCTTCTTTGTTGAAAGAAAGTAAAGGGCAACCTGCTGCAATTAGCATCAC
CTGTATACATGTCCGACAGAGGATTGCTTTCAAAGGGTACGGCTGAGACT
GAGACTATTTCTCTCTCACTCTCATGGTTATGAGACTTGACCAAATCAAA
CAACAGAGGCACGGTCAGTACACTTCAGATCCCAAATCCCCCCTGAGTTA
AGGTGGCGCCGCCCCCCCCTCCCCCCCTGATTGCCGGGCCGGGCGTGGGG
GGGCGCGGCGGGCAGGCGCGGGGGCGCCCACCATGGTGATCGCCCTCCCC
ATCCACCAGGCCCAGCAGCCCGGGGTGCCGGGCGGGGGCGGGGGCGGCCC
GGTGATGATGGTCCCCACAGTGGTGTCCCCCGGCGGCGGCGGCCTGCCCC
ACACCCAGGTCGTGGTGGCCACAGGTGGGCGGTGCACCCCCCCATCCCTC
CCCTACAATGTCTGTTCGGGGGAGCACGCCTGGGGTGCGCTCTTGCGCGC
CTTTGTTGCCGGCGCCGGCGGACTTGTCCGCCATCACAGCAGGGGATGGG
CACTACATACCTGCCCATGATGCCGCCCTCTCTCTCCCCCATCTGTTTGC
ATCCACCAACAAACTATTACCATGACTGATTTTTCATTCTACATACTTTG
ACTTTAATGTCTTTGACATGGAGCAGACCAGCACTGGTCTTAGGCCTCCC
ACATCACTAACCACTGTAGACAGACGTATTCATTTTTTATTATTGATTAG
AAAAAAAAAGCTATCCTCACTACCAGCACTGGTCTTAGGCCTCCCACATC
ACTAACCACTGTAGACAGACGTATTCATTTTTTATTATTGATTAGAAAAA
AAAAGCTATCCTTACTACAAGTCTGCTCCATGTCAAAGACATTAAAGGAA
ACATAGAATGAAAAAATCAATTTAAACCCTGTCTTGTCAGAGACTGCCAA
AAAATCAACTAGACTACCACGACTGTAATGCGGCATTGTCCAGCACCGCT
CTTCTTTCGCCGGCGATCCTCCTTTGGTCTTCCCTCGCTTGACCGCCTCC
CCAGGAGTTCCGGCGGGGGGGGCGGTGACCGGGCCGGCGGCCGGCGGGGG
GCAGTATTACCCGCAGCAGCAGCAGCAGCAGCCTGCGCCGCAGCCGCCGG
GGTACTACAGCCAGGGGCAGCCCCGGCCCCAGCAGAACACAAACAGCAAC
AATCCACTGGTTATCAATAAAGAGTTTGGTGGGGCTGTCTAGGGGGGAGA
GCTGGGTTTGGTAGTAGTTGGAACCATTATGTTTCCTTCTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig93:1077268..1079408+

>mRNA_H-akashiwo_Contig93.34.1 ID=mRNA_H-akashiwo_Contig93.34.1|Name=mRNA_H-akashiwo_Contig93.34.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=498bp|location=Sequence derived from alignment at H-akashiwo_Contig93:1077268..1079408+ (Heterosigma akashiwo CCMP452)
ATGTGGGTGATGCCAAGTGAATTGGATGGACTTGGGGGAGCTGCAAGCTT
TGCCTGCTTTCTTCTTTGGGTAATTTTCATCTCAAGCATTGTTCAGGAGT
CCTGTTTGTGCTGTGGTAATAGCTGCAACAACAAACAGGCAATTCAACAA
GGCGCGGGGGCGCCCACCATGGTGATCGCCCTCCCCATCCACCAGGCCCA
GCAGCCCGGGGTGCCGGGCGGGGGCGGGGGCGGCCCGGTGATGATGGTCC
CCACAGTGGTGTCCCCCGGCGGCGGCGGCCTGCCCCACACCCAGGTCGTG
GTGGCCACAGGAGTTCCGGCGGGGGGGGCGGTGACCGGGCCGGCGGCCGG
CGGGGGGCAGTATTACCCGCAGCAGCAGCAGCAGCAGCCTGCGCCGCAGC
CGCCGGGGTACTACAGCCAGGGGCAGCCCCGGCCCCAGCAGAACACAAAC
AGCAACAATCCACTGGTTATCAATAAAGAGTTTGGTGGGGCTGTCTAG
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