mRNA_H-akashiwo_Contig93.28.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.28.1
Unique NamemRNA_H-akashiwo_Contig93.28.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig93.28.1 vs. uniprot
Match: A0A7S3XQA4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQA4_HETAK)

HSP 1 Score: 354 bits (908), Expect = 2.360e-121
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 1 
Query:    1 VEVHSFSAESEYTLEIERDGSEYEEESLGVFLVAVDDADEHGLEEAEEHIEEDDHHDAVYVSNGNILTLHDHELLLILELENENNVTVFTFETHEAVSFAVFFEHGPDELAFALKNASGTALTAALSESAEDHTHGESSEETEDSHDEDELEVSGATWGLVMAATAVASAGAAAGLALFALLKTERVQALALELSA 588
            VEVHSFSAESEYTLEIERDGSEYEEESLGVFLVAVDDADEHGLEEAEEHIEEDDHHDAVYVSNGNILTLHDHELLLILELENENNVTVFTFETHEAVSFAVFFEHGPDELAFALKNASGTALTAALSESAEDHTHGESSEETEDSHDEDELEVSGATWGLVMAATAVASAGAAAGLALFALLKTERVQALALELSA
Sbjct:   30 VEVHSFSAESEYTLEIERDGSEYEEESLGVFLVAVDDADEHGLEEAEEHIEEDDHHDAVYVSNGNILTLHDHELLLILELENENNVTVFTFETHEAVSFAVFFEHGPDELAFALKNASGTALTAALSESAEDHTHGESSEETEDSHDEDELEVSGATWGLVMAATAVASAGAAAGLALFALLKTERVQALALELSA 225
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BLAST of mRNA_H-akashiwo_Contig93.28.1 vs. uniprot
Match: A0A7S3Y3X9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3X9_HETAK)

HSP 1 Score: 277 bits (708), Expect = 5.710e-91
Identity = 152/195 (77.95%), Postives = 171/195 (87.69%), Query Frame = 1 
Query:    1 VEVHSFSAESEYTLEIERDGSEYEEESLGVFLVAVDDADEHGLEEAEEHIEEDDHHDAVYVSNGNILTLHDHELLLILELENENNVTVFTFETHEAVSFAVFFEHGPDELAFALKNASGTALTAALSESAEDHTHGESSEETEDSHDEDELEVSGATWGLVMAATAVASAGAAAGLALFALLKTERVQALALELS 585
            VEVHSFSAESEYTLEI+RDGSEY+E+SL +F VAVDDADEHGLEEAEEHIEEDD HD VYVSNGNILTLH  ELLL LELE ENN+T+FTFETH+A S+AVFFEHGPDEL F+LKNASGTAL AALSESAEDH+H  S+ E     D++ELEVS ATWGLVM AT +ASAGAAAGLALF+LLKT+RV+ LA+ L+
Sbjct:   65 VEVHSFSAESEYTLEIQRDGSEYDEDSLSIFFVAVDDADEHGLEEAEEHIEEDDDHDPVYVSNGNILTLHQDELLLTLELEAENNLTIFTFETHDAGSYAVFFEHGPDELPFSLKNASGTALVAALSESAEDHSHESSTSEXXXXXDDEELEVSSATWGLVMGATLIASAGAAAGLALFSLLKTDRVKVLAMHLA 259
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BLAST of mRNA_H-akashiwo_Contig93.28.1 vs. uniprot
Match: A0A7S4DBT4_HETAK (Hypothetical protein n=8 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBT4_HETAK)

HSP 1 Score: 277 bits (708), Expect = 1.520e-87
Identity = 152/195 (77.95%), Postives = 171/195 (87.69%), Query Frame = 1 
Query:    1 VEVHSFSAESEYTLEIERDGSEYEEESLGVFLVAVDDADEHGLEEAEEHIEEDDHHDAVYVSNGNILTLHDHELLLILELENENNVTVFTFETHEAVSFAVFFEHGPDELAFALKNASGTALTAALSESAEDHTHGESSEETEDSHDEDELEVSGATWGLVMAATAVASAGAAAGLALFALLKTERVQALALELS 585
            VEVHSFSAESEYTLEI+RDGSEY+E+SL +F VAVDDADEHGLEEAEEHIEEDD HD VYVSNGNILTLH  ELLL LELE ENN+T+FTFETH+A S+AVFFEHGPDEL F+LKNASGTAL AALSESAEDH+H  S+ E     D++ELEVS ATWGLVM AT +ASAGAAAGLALF+LLKT+RV+ LA+ L+
Sbjct:   65 VEVHSFSAESEYTLEIQRDGSEYDEDSLSIFFVAVDDADEHGLEEAEEHIEEDDDHDPVYVSNGNILTLHQDELLLTLELEAENNLTIFTFETHDAGSYAVFFEHGPDELPFSLKNASGTALVAALSESAEDHSHESSTSEXXXXXDDEELEVSSATWGLVMGATLIASAGAAAGLALFSLLKTDRVKVLAMHLA 259
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BLAST of mRNA_H-akashiwo_Contig93.28.1 vs. uniprot
Match: A0A6V1U7C3_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U7C3_HETAK)

HSP 1 Score: 192 bits (488), Expect = 5.090e-55
Identity = 116/198 (58.59%), Postives = 143/198 (72.22%), Query Frame = 1 
Query:    1 VEVHSFSAESEYTLEIERDGSEYEEESLGVFLVAVDDADEHGLEEAEEHIEEDDHHDAVYVSNGNILTLHDHELLLILELENENNVTVFTFETHEAVSFAVFFEHGPDELAFALKNASGTALTAALSESA-EDHTHGESSEETEDSHDEDELEVSGATWGLVMAATAVASAGAAAGLALFALLKT--ERVQALALELS 585
            VEVHSFSA+SEYTLEI++ G +Y EESL VF VAVDD D HGLEEAE+H+ ED+ H+AVYVSNGN LTL   ELLL L L+NEN+ TVFTFET +A  +A+FF+H PDEL F LK+ASGT L A LSES+ EDH H             DELEVS   WGLV+ A  +A A A  GL LF+L++   +R +A+A++L+
Sbjct:   31 VEVHSFSADSEYTLEIQKGGGDYSEESLSVFFVAVDDTDAHGLEEAEDHLAEDNDHEAVYVSNGNGLTLRQDELLLTLVLDNENDETVFTFETLDASGYALFFQHSPDELDFTLKDASGTTLVAELSESSTEDHDHX-----XXXXXXXDELEVSSTVWGLVIGANVLAGAAAMVGLVLFSLMRGMGDRTKAIAMQLA 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3XQA4_HETAK2.360e-121100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y3X9_HETAK5.710e-9177.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DBT4_HETAK1.520e-8777.95Hypothetical protein n=8 Tax=Heterosigma akashiwo ... [more]
A0A6V1U7C3_HETAK5.090e-5558.59Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:930323..931027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size591
Hectar predicted targeting categoryother localisation
Exons2
Cds size588
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388046.3289814-CDS-H-akashiwo_Contig93:930324..9307491681388046.3289814-CDS-H-akashiwo_Contig93:930324..930749Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 930325..930749 -
1681388046.3444784-CDS-H-akashiwo_Contig93:930864..9310271681388046.3444784-CDS-H-akashiwo_Contig93:930864..931027Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 930865..931027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.28.1prot_H-akashiwo_Contig93.28.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 930325..931027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.28.1

>prot_H-akashiwo_Contig93.28.1 ID=prot_H-akashiwo_Contig93.28.1|Name=mRNA_H-akashiwo_Contig93.28.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=196bp
VEVHSFSAESEYTLEIERDGSEYEEESLGVFLVAVDDADEHGLEEAEEHI
EEDDHHDAVYVSNGNILTLHDHELLLILELENENNVTVFTFETHEAVSFA
VFFEHGPDELAFALKNASGTALTAALSESAEDHTHGESSEETEDSHDEDE
LEVSGATWGLVMAATAVASAGAAAGLALFALLKTERVQALALELSA
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mRNA from alignment at H-akashiwo_Contig93:930323..931027-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.28.1 ID=mRNA_H-akashiwo_Contig93.28.1|Name=mRNA_H-akashiwo_Contig93.28.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=705bp|location=Sequence derived from alignment at H-akashiwo_Contig93:930323..931027- (Heterosigma akashiwo CCMP452)
GTGGAGGTCCATAGCTTCTCAGCGGAATCAGAATACACTCTTGAGATCGA
GCGAGACGGGAGCGAATACGAGGAAGAGTCCTTAGGCGTTTTCCTTGTGG
CTGTTGATGATGCTGACGAGCATGGTCTTGAAGAGGCCGAAGAGCACATC
GAAGAAGACGACCGTGAGTGCGCAAGTCTGTTGAAAGCCCACTTTGCCCA
CAGCATTAATTTATGACTGCCATGATCACTTTTTACAACAAAAGCCCCTG
CCCCTCGGTCCACTCAAAACCTCATCAGATCATGATGCTGTTTATGTAAG
CAACGGCAACATCCTGACGCTCCACGACCATGAGCTGCTGCTGATCTTGG
AGCTGGAGAACGAGAACAACGTGACGGTCTTCACTTTCGAGACCCACGAG
GCCGTCTCCTTCGCCGTGTTTTTCGAGCACGGGCCGGACGAGCTGGCCTT
CGCCCTCAAGAACGCCTCCGGCACCGCCCTGACGGCCGCCCTGTCGGAGT
CCGCGGAGGACCACACCCACGGGGAGTCCTCCGAGGAGACGGAGGACTCC
CACGACGAGGACGAGCTGGAGGTGAGCGGCGCGACGTGGGGGCTGGTGAT
GGCGGCCACGGCGGTGGCCTCGGCGGGCGCGGCGGCCGGGCTGGCGCTGT
TCGCGCTGCTCAAGACGGAGCGCGTGCAGGCGCTGGCGCTGGAGCTGTCC
GCGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig93:930323..931027-

>mRNA_H-akashiwo_Contig93.28.1 ID=mRNA_H-akashiwo_Contig93.28.1|Name=mRNA_H-akashiwo_Contig93.28.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=588bp|location=Sequence derived from alignment at H-akashiwo_Contig93:930323..931027- (Heterosigma akashiwo CCMP452)
GTGGAGGTCCATAGCTTCTCAGCGGAATCAGAATACACTCTTGAGATCGA
GCGAGACGGGAGCGAATACGAGGAAGAGTCCTTAGGCGTTTTCCTTGTGG
CTGTTGATGATGCTGACGAGCATGGTCTTGAAGAGGCCGAAGAGCACATC
GAAGAAGACGACCATCATGATGCTGTTTATGTAAGCAACGGCAACATCCT
GACGCTCCACGACCATGAGCTGCTGCTGATCTTGGAGCTGGAGAACGAGA
ACAACGTGACGGTCTTCACTTTCGAGACCCACGAGGCCGTCTCCTTCGCC
GTGTTTTTCGAGCACGGGCCGGACGAGCTGGCCTTCGCCCTCAAGAACGC
CTCCGGCACCGCCCTGACGGCCGCCCTGTCGGAGTCCGCGGAGGACCACA
CCCACGGGGAGTCCTCCGAGGAGACGGAGGACTCCCACGACGAGGACGAG
CTGGAGGTGAGCGGCGCGACGTGGGGGCTGGTGATGGCGGCCACGGCGGT
GGCCTCGGCGGGCGCGGCGGCCGGGCTGGCGCTGTTCGCGCTGCTCAAGA
CGGAGCGCGTGCAGGCGCTGGCGCTGGAGCTGTCCGCG
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