mRNA_H-akashiwo_Contig93.20.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.20.1
Unique NamemRNA_H-akashiwo_Contig93.20.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig93.20.1 vs. uniprot
Match: A0A7S3Y2C2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2C2_HETAK)

HSP 1 Score: 294 bits (753), Expect = 2.000e-100
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 
Query:    1 VCQEVADVAALSDEEVDALNEAYGFYDVLAFLATYTPEADRLLRQAPATGATIFDGADEAENAALKRFLLALGCTAGQISAFATPLAATNDPLFLPVHTLHQKHWAALQLAAREGFDYAWPEGGCWGHGEEDRLPWARADLLL 429
            VCQEVADVAALSDEEVDALNEAYGFYDVLAFLATYTPEADRLLRQAPATGATIFDGADEAENAALKRFLLALGCTAGQISAFATPLAATNDPLFLPVHTLHQKHWAALQLAAREGFDYAWPEGGCWGHGEEDRLPWARADLLL
Sbjct:   39 VCQEVADVAALSDEEVDALNEAYGFYDVLAFLATYTPEADRLLRQAPATGATIFDGADEAENAALKRFLLALGCTAGQISAFATPLAATNDPLFLPVHTLHQKHWAALQLAAREGFDYAWPEGGCWGHGEEDRLPWARADLLL 181
[Close]
BLAST of mRNA_H-akashiwo_Contig93.20.1 vs. uniprot
Match: A0A7S4DB05_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB05_HETAK)

HSP 1 Score: 109 bits (273), Expect = 4.140e-27
Identity = 52/92 (56.52%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:  160 FDGADEAENAALKRFLLALGCTAGQISAFATPLAATNDPLFLPVHTLHQKHWAALQLAAREGFDYAWPEG---GCWGHGEEDRLPWARADLL 426
            F GAD+ E+AALKRFLL +GCTAG +SA+ +P A+  DPLFLP H+ H +HWA +QL   E  D +WP G   GCWGHGE D LP+  A L 
Sbjct:   92 FKGADDKEDAALKRFLLKIGCTAGALSAWTSPEASPADPLFLPAHSNHHRHWARIQLTT-EDLDLSWPTGDVGGCWGHGEFDALPFTEAGLF 182
[Close]
BLAST of mRNA_H-akashiwo_Contig93.20.1 vs. uniprot
Match: A0A7S2FXG9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FXG9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.200e-5
Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:  157 IFDGADEAENAALKRFLLALGCTAGQISAFATPLAATNDPLFLPVHTLHQKHW 315
            +F G D      L+RFLL L C  G+++ FATP AATNDPLF   H+ +   W
Sbjct:   28 LFRGVDLDTTLRLRRFLLRLLCHPGKVAQFATPQAATNDPLFWVTHSTYLPLW 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3Y2C2_HETAK2.000e-100100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DB05_HETAK4.140e-2756.52Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2FXG9_9STRA2.200e-547.17Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:712855..713570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009039249.1
PFAMsTyrosinase
Model size430
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.22e-07
EggNOG OGs2D2GE@1|root,2SMT5@2759|Eukaryota
DescriptionCommon central domain of tyrosinase
Cds size429
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388047.3061085-CDS-H-akashiwo_Contig93:712854..7130121681388047.3061085-CDS-H-akashiwo_Contig93:712854..713012Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 712855..713012 +
1681388047.318329-CDS-H-akashiwo_Contig93:713298..7135691681388047.318329-CDS-H-akashiwo_Contig93:713298..713569Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 713299..713569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.20.1prot_H-akashiwo_Contig93.20.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 712855..713569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.20.1

>prot_H-akashiwo_Contig93.20.1 ID=prot_H-akashiwo_Contig93.20.1|Name=mRNA_H-akashiwo_Contig93.20.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=143bp
VCQEVADVAALSDEEVDALNEAYGFYDVLAFLATYTPEADRLLRQAPATG
ATIFDGADEAENAALKRFLLALGCTAGQISAFATPLAATNDPLFLPVHTL
HQKHWAALQLAAREGFDYAWPEGGCWGHGEEDRLPWARADLLL
back to top

mRNA from alignment at H-akashiwo_Contig93:712855..713570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.20.1 ID=mRNA_H-akashiwo_Contig93.20.1|Name=mRNA_H-akashiwo_Contig93.20.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=716bp|location=Sequence derived from alignment at H-akashiwo_Contig93:712855..713570+ (Heterosigma akashiwo CCMP452)
GTGTGCCAAGAGGTGGCGGACGTGGCGGCCCTGAGCGACGAGGAGGTGGA
CGCCCTGAACGAGGCCTACGGCTTCTACGACGTGCTGGCCTTCCTGGCCA
CCTACACCCCGGAGGCCGACCGCCTGCTGCGCCAGGCCCCCGCCACCGGC
GCCACCATGTGAGGGGCTGTCCGACGTCAAGTAGTCGCTCGATTTTGTGT
CGGACTAAGTACATGATTCTTAAATTCTGCAGATGGGGGAAGCTGCAAGT
TACATGTCTCAACTGATGTAAATGACACAGGAGAGGAGACTGTACGAAAT
AATTAATTGTAGTCGTTGAAATGAAAGTCCCCTCTCCTCATCATGACAGA
AACATGCGTTCACGCAACCAGGAAAAATGCCCCCCCCCCCGCCCGCTGCC
CCCCTCCTATGGTTCCCGGGCGTGTGGGGCCGGGGGGCGCGCAGCTTCGA
CGGGGCCGACGAGGCGGAGAACGCGGCCCTGAAGCGGTTCCTGCTGGCCC
TGGGCTGCACCGCCGGGCAGATCTCGGCCTTCGCCACCCCGCTGGCCGCC
ACCAACGACCCGCTCTTCCTGCCCGTGCACACGCTGCACCAGAAGCACTG
GGCCGCCCTGCAGCTCGCGGCCAGGGAGGGGTTCGACTACGCGTGGCCGG
AGGGCGGCTGCTGGGGCCACGGGGAGGAGGACCGGCTGCCCTGGGCGCGG
GCTGACCTGCTGCTGC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig93:712855..713570+

>mRNA_H-akashiwo_Contig93.20.1 ID=mRNA_H-akashiwo_Contig93.20.1|Name=mRNA_H-akashiwo_Contig93.20.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=429bp|location=Sequence derived from alignment at H-akashiwo_Contig93:712855..713570+ (Heterosigma akashiwo CCMP452)
GTGTGCCAAGAGGTGGCGGACGTGGCGGCCCTGAGCGACGAGGAGGTGGA
CGCCCTGAACGAGGCCTACGGCTTCTACGACGTGCTGGCCTTCCTGGCCA
CCTACACCCCGGAGGCCGACCGCCTGCTGCGCCAGGCCCCCGCCACCGGC
GCCACCATCTTCGACGGGGCCGACGAGGCGGAGAACGCGGCCCTGAAGCG
GTTCCTGCTGGCCCTGGGCTGCACCGCCGGGCAGATCTCGGCCTTCGCCA
CCCCGCTGGCCGCCACCAACGACCCGCTCTTCCTGCCCGTGCACACGCTG
CACCAGAAGCACTGGGCCGCCCTGCAGCTCGCGGCCAGGGAGGGGTTCGA
CTACGCGTGGCCGGAGGGCGGCTGCTGGGGCCACGGGGAGGAGGACCGGC
TGCCCTGGGCGCGGGCTGACCTGCTGCTG
back to top