mRNA_H-akashiwo_Contig93.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.2.1
Unique NamemRNA_H-akashiwo_Contig93.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:219611..219913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size293
Hectar predicted targeting categoryother localisation
Exons2
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388046.0020566-CDS-H-akashiwo_Contig93:219610..2197431681388046.0020566-CDS-H-akashiwo_Contig93:219610..219743Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 219611..219743 +
1681388046.0158825-CDS-H-akashiwo_Contig93:219754..2199031681388046.0158825-CDS-H-akashiwo_Contig93:219754..219903Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 219755..219903 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388046.026968-UTR-H-akashiwo_Contig93:219903..2199131681388046.026968-UTR-H-akashiwo_Contig93:219903..219913Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig93 219904..219913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.2.1prot_H-akashiwo_Contig93.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 219611..219903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.2.1

>prot_H-akashiwo_Contig93.2.1 ID=prot_H-akashiwo_Contig93.2.1|Name=mRNA_H-akashiwo_Contig93.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=94bp
FQRTLCFNLASKDFVAGPKTTPQSFPSLPDAGARFPSSCSRSCFLAESTG
RSRADHLQSKSKVSACKRKRKVSASTSGAVPNDLLYGSAGALF*
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mRNA from alignment at H-akashiwo_Contig93:219611..219913+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.2.1 ID=mRNA_H-akashiwo_Contig93.2.1|Name=mRNA_H-akashiwo_Contig93.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=303bp|location=Sequence derived from alignment at H-akashiwo_Contig93:219611..219913+ (Heterosigma akashiwo CCMP452)
TTTCAGCGAACTCTGTGCTTCAACTTGGCTTCGAAAGACTTTGTAGCCGG
CCCTAAAACAACCCCTCAGTCTTTCCCAAGCCTACCTGATGCCGGAGCGA
GATTTCCCTCTTCTTGCAGCAGAAGCTGTTTTCGTTGCTGAAAGTTGCTG
AAAGTACAGGACGAAGCAGGGCAGATCACTTGCAGAGCAAGAGCAAAGTG
AGTGCCTGCAAGAGGAAGCGTAAAGTGAGCGCTTCGACAAGTGGAGCCGT
CCCAAATGACCTCCTATACGGATCGGCTGGAGCGTTGTTTTGAAGATCCG
TAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig93:219611..219913+

>mRNA_H-akashiwo_Contig93.2.1 ID=mRNA_H-akashiwo_Contig93.2.1|Name=mRNA_H-akashiwo_Contig93.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=282bp|location=Sequence derived from alignment at H-akashiwo_Contig93:219611..219913+ (Heterosigma akashiwo CCMP452)
TTTCAGCGAACTCTGTGCTTCAACTTGGCTTCGAAAGACTTTGTAGCCGG
CCCTAAAACAACCCCTCAGTCTTTCCCAAGCCTACCTGATGCCGGAGCGA
GATTTCCCTCTTCTTGCAGCAGAAGCTGTTTTCTTGCTGAAAGTACAGGA
CGAAGCAGGGCAGATCACTTGCAGAGCAAGAGCAAAGTGAGTGCCTGCAA
GAGGAAGCGTAAAGTGAGCGCTTCGACAAGTGGAGCCGTCCCAAATGACC
TCCTATACGGATCGGCTGGAGCGTTGTTTTGA
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