mRNA_H-akashiwo_Contig93.19.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.19.1
Unique NamemRNA_H-akashiwo_Contig93.19.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig93.19.1 vs. uniprot
Match: A0A7S3YHN7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHN7_HETAK)

HSP 1 Score: 227 bits (578), Expect = 1.010e-72
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
Query:    1 MSASSTPFSWEILDENNNPLEVTSLDATLSSEVSAVFTSAGSFYTIQVEGNGLSVQTKVICKYVRREIRSLNDDDKSNFLNALKIFHTIDSEEGKRLYGEDFFNYQDLTNMHLA 342
            MSASSTPFSWEILDENNNPLEVTSLDATLSSEVSAVFTSAGSFYTIQVEGNGLSVQTKVICKYVRREIRSLNDDDKSNFLNALKIFHTIDSEEGKRLYGEDFFNYQDLTNMHLA
Sbjct:  119 MSASSTPFSWEILDENNNPLEVTSLDATLSSEVSAVFTSAGSFYTIQVEGNGLSVQTKVICKYVRREIRSLNDDDKSNFLNALKIFHTIDSEEGKRLYGEDFFNYQDLTNMHLA 232          
BLAST of mRNA_H-akashiwo_Contig93.19.1 vs. uniprot
Match: A0A6V1WW05_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WW05_HETAK)

HSP 1 Score: 108 bits (271), Expect = 2.580e-25
Identity = 59/113 (52.21%), Postives = 75/113 (66.37%), Query Frame = 1
Query:   13 STPFSWEILDENNNPLEVTSLDATLSSEVSAVFTSAGSFYTIQVEGNGL---SVQTKVICKYVRREIRSLNDDDKSNFLNALKIFHTIDSEEGKRLYGEDFFNYQDLTNMHLA 342
            ST ++W I DE+    EV        SEV  VFTSAG FYTI V+ +     S   KVICKYVRRE+RSL+ +DK  F NAL+IF+T  +EEGK +YG DFFNY+D + +HL+
Sbjct:  136 STSYTWTITDESG---EVFFQSEGFQSEVPVVFTSAGQFYTISVQDSASPPSSTTHKVICKYVRREVRSLSYEDKEIFRNALRIFYTTPTEEGKAIYGSDFFNYRDASILHLS 245          
BLAST of mRNA_H-akashiwo_Contig93.19.1 vs. uniprot
Match: A0A6V1TY89_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TY89_HETAK)

HSP 1 Score: 97.8 bits (242), Expect = 1.940e-21
Identity = 48/90 (53.33%), Postives = 65/90 (72.22%), Query Frame = 1
Query:   91 SEVSAVFTSAGSFYTIQVEGNG------LSVQTKVICKYVRREIRSLNDDDKSNFLNALKIFHTIDSEEGKRLYGEDFFNYQDLTNMHLA 342
            SEVS +FT AG FYTI+ + N       L++  KVICKYVRRE+R+L+ +D+  F +AL+IFHT+ + EGK  YG DFFNY+D + +HLA
Sbjct:    1 SEVSVIFTVAGQFYTIEAKDNSTSQSSSLTITQKVICKYVRRELRALHYEDREKFRHALRIFHTMPTVEGKAEYGVDFFNYRDSSMLHLA 90          
BLAST of mRNA_H-akashiwo_Contig93.19.1 vs. uniprot
Match: A0A7S3XY60_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY60_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 3.080e-19
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   13 STPFSWEI-LDENNNPLEVTSLDATLSSEVSAVFTSAGSFYTIQVE-----GNGLSVQTKVICKYVRREIRSLNDDDKSNFLNALKIFHTIDSEEGKRLYGEDFFNYQDLTNMHLA 342
            ST   W + LDEN  P E   ++    S V A+FT  G FY + +E     GN    + KVICKYVRREIRSL+++D+  + +AL+ +H +  EEG++LYG  F N +DLT  HLA
Sbjct:  148 STKHQWTVFLDEN--PHEHVEIEDNGQSVVQAMFTKPGRFYHVHIEESDSNGNTNVFKYKVICKYVRREIRSLHEEDREKYFSALEAYHRLSMEEGQQLYGMTFHNAKDLTIRHLA 261          
BLAST of mRNA_H-akashiwo_Contig93.19.1 vs. uniprot
Match: A0A7S2BBP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BBP0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.960e-11
Identity = 34/86 (39.53%), Postives = 45/86 (52.33%), Query Frame = 1
Query:  109 FTSAGSFYTIQVEGNGLSVQTKVI---------CKYVRREIRSLNDDDKSNFLNALKIFHTIDSEEGKRLYGEDFFNYQDLTNMHL 339
            F   G  Y I V    L  + KV          CKYVRREIR LN+DD+  +  A+K+    D  +GK +YG++F N Q +T  HL
Sbjct:    3 FNKPGKEYWISVTEESLDTEDKVHTRTYTASVQCKYVRREIRRLNEDDRREYFEAMKVIAHTDMVKGKHVYGDEFVNLQYMTKKHL 88          
BLAST of mRNA_H-akashiwo_Contig93.19.1 vs. uniprot
Match: A0A7S2WC22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WC22_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.810e-10
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   40 DENNNPLEVTSLDATLSSE---VSAVFTSAGSFYTIQV----EGNGLSVQTKVICKYVRREIRSLNDDDKSNFLNALKIFHTIDSEEGKRLYGEDFFNYQDLTNMH 336
            D +  PL  T+ D  L+S     + VF + G+ Y++ +    +G  L V+ +V C YVRRE+RS+++DD+  F++ALK+   I +EEGK  +G  ++      N+H
Sbjct:  103 DTSEAPLAYTAEDFGLASSGIGATVVFPAPGT-YSVDLRCHEDGESLQVEEEVACLYVRRELRSISEDDRERFMSALKLMDEIQNEEGKSQFGGHYYTLDYFANIH 207          
BLAST of mRNA_H-akashiwo_Contig93.19.1 vs. uniprot
Match: D7FP10_ECTSI (TYRosinase family member (Tyr-3) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP10_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.300e-10
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  121 GSFYTIQVEG---NGLSV---QTKVICKYVRREIRSLNDDDKSNFLNALKIFHTIDSEEGKRLYGEDFFNYQDLTNMHLA 342
            G+ Y + VE    NG  +    +KV CKYVRREIR L D D+  FL+A+ I++T+ ++ GK  YG  F NYQ +T  H A
Sbjct:  107 GTAYFLSVESVDENGRVITEGNSKVSCKYVRREIRDLTDRDREAFLDAMLIWYTLPTDVGKDRYGPSFSNYQVITAYHNA 186          
BLAST of mRNA_H-akashiwo_Contig93.19.1 vs. uniprot
Match: A0A7S2B6E8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6E8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.390e-10
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 1
Query:    4 SASSTPFSWEILDENNNPLEVTSLDATLSSEVSAVFTSAGSFYTIQV-----EGNGLSVQTKVICKYVRREIRSLNDDDKSNFLNALKIFHTIDSEEGKRLYGEDFFNYQDLTNMHLA 342
            +AS +   W IL          ++  T  SEV+AVF  A  +Y I V     +G  ++ +   ICKYVRRE+RSL++ D++ + +AL+  H +   EG+  YG  F N +     HL+
Sbjct:  174 TASGSEIEWSILYTRMQKEHSINVAGT-GSEVTAVFPHAAQWYNITVREIRQDGKVITARFSSICKYVRRELRSLSNRDRNRYFSALEKIHRLPLSEGQAKYGAKFANQEVFLVKHLS 290          
BLAST of mRNA_H-akashiwo_Contig93.19.1 vs. uniprot
Match: A0A7S4DBJ4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBJ4_HETAK)

HSP 1 Score: 64.7 bits (156), Expect = 8.640e-10
Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   22 FSWEILDENNNPLEVTSLDATLSSEVSAVFTSAGSF---YTIQVEGNGL--SVQTKVICKYVRREIRSLNDDDKSNFLNALKIFHTIDSEEGKRLYGEDFFNYQDLTNMHL 339
            F+WE+ D  +  L+  ++D T        FTS G      TI    +G   + +++V+ KYVRREIRSL D+D+   L+A++    +D E G+ LYGE++ + Q  +  HL
Sbjct:  143 FTWEV-DGESQDLKANAIDVT--------FTSTGPKTVKLTIADSSSGTVGTYESEVVVKYVRREIRSLTDEDRKRTLDAIETIFRVDQETGEHLYGENYRSIQSFSEEHL 244          
BLAST of mRNA_H-akashiwo_Contig93.19.1 vs. uniprot
Match: A0A7S3Y3R6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3R6_HETAK)

HSP 1 Score: 63.5 bits (153), Expect = 2.140e-9
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   22 FSWEILDENNNPLEVTSLDATLSSEVSAVFTSAGSF---YTIQVEGNGL--SVQTKVICKYVRREIRSLNDDDKSNFLNALKIFHTIDSEEGKRLYGEDFFNYQDLTNMHL 339
            F+WE+ D     L+  ++D T        FTS G      TI    +G   + +++V+ KYVRREIRSL D+D+   L+A++    +D E G+ LYGE++ + Q  +  HL
Sbjct:  129 FTWEV-DGEAQDLKANTIDVT--------FTSTGPKTVKLTIADSSSGTVGTYESEVVVKYVRREIRSLTDEDRKRTLDAIETIFRVDQETGEHLYGENYRSIQSFSEEHL 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3YHN7_HETAK1.010e-72100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6V1WW05_HETAK2.580e-2552.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1TY89_HETAK1.940e-2153.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XY60_HETAK3.080e-1944.83Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S2BBP0_9STRA3.960e-1139.53Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2WC22_9STRA1.810e-1034.91Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FP10_ECTSI6.300e-1045.00TYRosinase family member (Tyr-3) n=1 Tax=Ectocarpu... [more]
A0A7S2B6E8_9STRA6.390e-1033.90Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4DBJ4_HETAK8.640e-1035.14Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y3R6_HETAK2.140e-935.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:709513..710363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSG6
PFAMsTyrosinase
Model size342
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.29e-12
EggNOG OGs2D2GE@1|root,2SMT5@2759|Eukaryota
DescriptionCommon central domain of tyrosinase
Cds size342
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388047.2472975-CDS-H-akashiwo_Contig93:709512..7096731681388047.2472975-CDS-H-akashiwo_Contig93:709512..709673Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 709513..709673 +
1681388047.2620146-CDS-H-akashiwo_Contig93:709822..7099241681388047.2620146-CDS-H-akashiwo_Contig93:709822..709924Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 709823..709924 +
1681388047.2717748-CDS-H-akashiwo_Contig93:710284..7103631681388047.2717748-CDS-H-akashiwo_Contig93:710284..710363Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 710285..710363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.19.1prot_H-akashiwo_Contig93.19.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 709513..710363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.19.1

>prot_H-akashiwo_Contig93.19.1 ID=prot_H-akashiwo_Contig93.19.1|Name=mRNA_H-akashiwo_Contig93.19.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=114bp
MSASSTPFSWEILDENNNPLEVTSLDATLSSEVSAVFTSAGSFYTIQVEG
NGLSVQTKVICKYVRREIRSLNDDDKSNFLNALKIFHTIDSEEGKRLYGE
DFFNYQDLTNMHLA
back to top

mRNA from alignment at H-akashiwo_Contig93:709513..710363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.19.1 ID=mRNA_H-akashiwo_Contig93.19.1|Name=mRNA_H-akashiwo_Contig93.19.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=851bp|location=Sequence derived from alignment at H-akashiwo_Contig93:709513..710363+ (Heterosigma akashiwo CCMP452)
ATGTCAGCTTCTTCGACCCCGTTCTCCTGGGAAATATTAGACGAAAACAA CAATCCCCTTGAGGTGACTTCTTTGGATGCCACACTGTCCTCAGAAGTCT CAGCAGTGTTCACCTCAGCTGGGAGTTTTTACACTATCCAAGTGGAAGGC AATGGCCTCAGGTTTGAGATGTTAAAAACAGAGCCACACTGTATTGATTA AAAAATTACCATAATTATCATTCGCCCCTATGGTTTGTCAAATTTCTTTC CTTGCCCTGCACAACCAGAGACCCTGTTCTATTTGTTGCCCACCTCTCCC CTTCATCCAGCGTCCAAACCAAAGTCATCTGCAAATATGTTCGACGGGAA ATTCGTAGTCTGAATGACGACGACAAGTCAAATTTTCTGAATGCCCTAAA GATTTTCCACACGTATGCACACATACACTTGAAATTATATACATCGCGTG TATCACGCCGCATTTTTCTGTTTATTTGCTGTGGATCTTCAGTCAATCAT GACCCATGATGGTGGGGTTGAAACCCAGTTTTTTACTTCATATGTAGGGT AGGGGTACTTCCTTCCCATTGATCCTGAGCATAAATATAAAATCCAACGA AATGTATATTACTGAATATTTCGGGCCATTTGGTAAACAAGGTGCCAACC CTCACTCAGGGTTCCTGGACTACATGAATCAAAACGTAAACAATTAGACG ATAACCCATCAGCAGCTGATCACTTTCTTTTCTGTTCTGTTGGCATATAT GTATATGTATAATATGTAATAGGATTGATAGCGAAGAAGGGAAAAGGCTG TACGGAGAAGACTTTTTCAATTACCAGGACCTGACAAACATGCACCTAGC G
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig93:709513..710363+

>mRNA_H-akashiwo_Contig93.19.1 ID=mRNA_H-akashiwo_Contig93.19.1|Name=mRNA_H-akashiwo_Contig93.19.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig93:709513..710363+ (Heterosigma akashiwo CCMP452)
ATGTCAGCTTCTTCGACCCCGTTCTCCTGGGAAATATTAGACGAAAACAA
CAATCCCCTTGAGGTGACTTCTTTGGATGCCACACTGTCCTCAGAAGTCT
CAGCAGTGTTCACCTCAGCTGGGAGTTTTTACACTATCCAAGTGGAAGGC
AATGGCCTCAGCGTCCAAACCAAAGTCATCTGCAAATATGTTCGACGGGA
AATTCGTAGTCTGAATGACGACGACAAGTCAAATTTTCTGAATGCCCTAA
AGATTTTCCACACGATTGATAGCGAAGAAGGGAAAAGGCTGTACGGAGAA
GACTTTTTCAATTACCAGGACCTGACAAACATGCACCTAGCG
back to top