mRNA_H-akashiwo_Contig93.17.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.17.1
Unique NamemRNA_H-akashiwo_Contig93.17.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig93.17.1 vs. uniprot
Match: A0A7S3YCM7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCM7_HETAK)

HSP 1 Score: 144 bits (362), Expect = 1.410e-41
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 2 
Query:    2 LDTEMNPPAESWGEEQASAEAVLRRKMSSSQTMKSVKSLKDLAEINNNNNKSGAGFDATILRNDSMGNFGSALSYTA 232
            LDTEMNPPAESWGEEQASAEAVLRRKMSSSQTMKSVKSLKDLAEINNNNNKSGAGFDATILRNDSMGNFGSALSYTA
Sbjct:   88 LDTEMNPPAESWGEEQASAEAVLRRKMSSSQTMKSVKSLKDLAEINNNNNKSGAGFDATILRNDSMGNFGSALSYTA 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YCM7_HETAK1.410e-41100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:707444..707956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size232
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388046.267055-CDS-H-akashiwo_Contig93:707443..7074861681388046.267055-CDS-H-akashiwo_Contig93:707443..707486Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 707444..707486 -
1681388046.2771463-CDS-H-akashiwo_Contig93:707767..7079431681388046.2771463-CDS-H-akashiwo_Contig93:707767..707943Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 707768..707943 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388046.2913287-UTR-H-akashiwo_Contig93:707943..7079561681388046.2913287-UTR-H-akashiwo_Contig93:707943..707956Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig93 707944..707956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.17.1prot_H-akashiwo_Contig93.17.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 707444..707943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.17.1

>prot_H-akashiwo_Contig93.17.1 ID=prot_H-akashiwo_Contig93.17.1|Name=mRNA_H-akashiwo_Contig93.17.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=73bp
MNPPAESWGEEQASAEAVLRRKMSSSQTMKSVKSLKDLAEINNNNNKSGA
GFDATILRNDSMGNFGSALSYTA
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mRNA from alignment at H-akashiwo_Contig93:707444..707956-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.17.1 ID=mRNA_H-akashiwo_Contig93.17.1|Name=mRNA_H-akashiwo_Contig93.17.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=513bp|location=Sequence derived from alignment at H-akashiwo_Contig93:707444..707956- (Heterosigma akashiwo CCMP452)
CCTGGACACCGAAATGAACCCTCCAGCGGAGTCATGGGGCGAGGAGCAAG
CAAGCGCTGAAGCCGTGCTGAGGAGAAAAATGAGTTCCTCCCAGACCATG
AAGTCTGTTAAAAGCTTAAAGGATCTTGCCGAGATTAACAACAACAATAA
TAAGAGTGGGGCCGGATTTGATGCCACAATTCTTCGCAAGTGAGTTTACA
TGATACACATACAGCATCACCCTTAACAGCTTGTGTCCTTCCTCCATGTT
GGAAAAACAAACAAACACACATACTGCCATTGAGTGAATAGAGCAAAAAA
TGCAATGCCAACACTGTTCTTTCCTCCTTCATTACTATTGTGCGAAGATT
TTTGGTTCCAGCGAATAAAAGAAACCCTAATTTTGGTGCTGGGGCTTCTG
ATGTCAAAAAACTCGCATGCCAAACTCACACCTGCCCTCTGCCTGTCGCC
GCCGCCGCCGCTGTCACCAGCGACAGTATGGGGAACTTTGGGAGCGCGCT
CTCGTACACGGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig93:707444..707956-

>mRNA_H-akashiwo_Contig93.17.1 ID=mRNA_H-akashiwo_Contig93.17.1|Name=mRNA_H-akashiwo_Contig93.17.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=219bp|location=Sequence derived from alignment at H-akashiwo_Contig93:707444..707956- (Heterosigma akashiwo CCMP452)
ATGAACCCTCCAGCGGAGTCATGGGGCGAGGAGCAAGCAAGCGCTGAAGC
CGTGCTGAGGAGAAAAATGAGTTCCTCCCAGACCATGAAGTCTGTTAAAA
GCTTAAAGGATCTTGCCGAGATTAACAACAACAATAATAAGAGTGGGGCC
GGATTTGATGCCACAATTCTTCGCAACGACAGTATGGGGAACTTTGGGAG
CGCGCTCTCGTACACGGCC
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