mRNA_H-akashiwo_Contig93.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig93.13.1
Unique NamemRNA_H-akashiwo_Contig93.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig93.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig93contigH-akashiwo_Contig93:661100..661494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size277
Hectar predicted targeting categorysignal peptide
Exons2
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388046.1476438-UTR-H-akashiwo_Contig93:661099..6611661681388046.1476438-UTR-H-akashiwo_Contig93:661099..661166Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig93 661100..661166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388046.1592972-CDS-H-akashiwo_Contig93:661166..6612901681388046.1592972-CDS-H-akashiwo_Contig93:661166..661290Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 661167..661290 +
1681388046.17177-CDS-H-akashiwo_Contig93:661408..6614941681388046.17177-CDS-H-akashiwo_Contig93:661408..661494Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig93 661409..661494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig93.13.1prot_H-akashiwo_Contig93.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig93 661167..661494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig93.13.1

>prot_H-akashiwo_Contig93.13.1 ID=prot_H-akashiwo_Contig93.13.1|Name=mRNA_H-akashiwo_Contig93.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=70bp
MAGSLISRRFSVFFVVLVCCIFIASTAVAASPRKSTRPSRKSAPARSSRR
YDEYDEDEDEDYDTGYDDYD
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mRNA from alignment at H-akashiwo_Contig93:661100..661494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig93.13.1 ID=mRNA_H-akashiwo_Contig93.13.1|Name=mRNA_H-akashiwo_Contig93.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=395bp|location=Sequence derived from alignment at H-akashiwo_Contig93:661100..661494+ (Heterosigma akashiwo CCMP452)
GAGACAACAGTAGCAGCACCAAGCAAAGGCTGCCCCAGCAAGAAAAGGGC
AAATTTTGTAGCCAAAGATGGCCGGCAGTTTGATAAGCAGACGTTTCAGC
GTGTTCTTCGTGGTGCTAGTATGCTGCATTTTTATCGCATCCACAGCTGT
TGCAGCCAGTCCAAGAAAGTCAACAAGGCCTTCTAGAAAAAGTAAGGACC
CAGCGGCCAAGCTTCACCTCCTCCTCCCATCTTCTTTCTTTCTCGGGTGA
GGGTTTTTCCTTCAAATTCATGGCTTAAGTTGTAAATTTTGGTTTCCCTC
TTTCTTCAGGTGCTCCTGCCCGGAGCTCAAGGAGATACGATGAGTATGAT
GAAGATGAGGACGAAGACTACGACACGGGCTATGATGATTACGAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig93:661100..661494+

>mRNA_H-akashiwo_Contig93.13.1 ID=mRNA_H-akashiwo_Contig93.13.1|Name=mRNA_H-akashiwo_Contig93.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=210bp|location=Sequence derived from alignment at H-akashiwo_Contig93:661100..661494+ (Heterosigma akashiwo CCMP452)
ATGGCCGGCAGTTTGATAAGCAGACGTTTCAGCGTGTTCTTCGTGGTGCT
AGTATGCTGCATTTTTATCGCATCCACAGCTGTTGCAGCCAGTCCAAGAA
AGTCAACAAGGCCTTCTAGAAAAAGTGCTCCTGCCCGGAGCTCAAGGAGA
TACGATGAGTATGATGAAGATGAGGACGAAGACTACGACACGGGCTATGA
TGATTACGAC
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