mRNA_H-akashiwo_Contig929.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig929.4.1
Unique NamemRNA_H-akashiwo_Contig929.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig929.4.1 vs. uniprot
Match: A0A7S3XSV0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSV0_HETAK)

HSP 1 Score: 246 bits (629), Expect = 8.790e-82
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1 
Query:    1 AERARKAKRLQTAKYIEENRKRKLRCWEELNEKGLSGLTKAQAKTDLRELCKDHRSESPQHPAICWSVQFLNENTNETDAGPFIVPDKKNPPVPADRSSKAKKEWIEGWLKDPAAMLVSLEA 366
            AERARKAKRLQTAKYIEENRKRKLRCWEELNEKGLSGLTKAQAKTDLRELCKDHRSESPQHPAICWSVQFLNENTNETDAGPFIVPDKKNPPVPADRSSKAKKEWIEGWLKDPAAMLVSLEA
Sbjct:   29 AERARKAKRLQTAKYIEENRKRKLRCWEELNEKGLSGLTKAQAKTDLRELCKDHRSESPQHPAICWSVQFLNENTNETDAGPFIVPDKKNPPVPADRSSKAKKEWIEGWLKDPAAMLVSLEA 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig929.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XSV0_HETAK8.790e-82100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig929contigH-akashiwo_Contig929:417643..418300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size370
Hectar predicted targeting categoryother localisation
Exons3
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388045.938224-CDS-H-akashiwo_Contig929:417642..4177421681388045.938224-CDS-H-akashiwo_Contig929:417642..417742Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig929 417643..417742 +
1681388045.949844-CDS-H-akashiwo_Contig929:417861..4180611681388045.949844-CDS-H-akashiwo_Contig929:417861..418061Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig929 417862..418061 +
1681388045.961084-CDS-H-akashiwo_Contig929:418231..4183001681388045.961084-CDS-H-akashiwo_Contig929:418231..418300Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig929 418232..418300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig929.4.1prot_H-akashiwo_Contig929.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig929 417643..418300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig929.4.1

>prot_H-akashiwo_Contig929.4.1 ID=prot_H-akashiwo_Contig929.4.1|Name=mRNA_H-akashiwo_Contig929.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=123bp
AERARKAKRLQTAKYIEENRKRKLRCWEELNEKGLSGLTKAQAKTDLREL
CKDHRSESPQHPAICWSVQFLNENTNETDAGPFIVPDKKNPPVPADRSSK
AKKEWIEGWLKDPAAMLVSLEA*
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mRNA from alignment at H-akashiwo_Contig929:417643..418300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig929.4.1 ID=mRNA_H-akashiwo_Contig929.4.1|Name=mRNA_H-akashiwo_Contig929.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=658bp|location=Sequence derived from alignment at H-akashiwo_Contig929:417643..418300+ (Heterosigma akashiwo CCMP452)
GCAGAGAGAGCAAGAAAAGCGAAGCGTCTTCAGACGGCCAAGTACATCGA
AGAAAACCGTAAACGCAAACTGAGGTGCTGGGAAGAACTGAACGAGAAAG
GTTGGACGCATTGGAATGTTGGATGAAATTGAATTACAACATGATATGCA
GTGCTGTGTTCACCTCGCACCTGAACGCGATTTTTGAACGTGGCTGGGCC
CATTTTTCATGATCATCAGGTCTAAGCGGGTTGACAAAGGCCCAAGCCAA
AACCGACTTGCGCGAACTATGTAAGGACCACCGCTCGGAAAGCCCTCAGC
ACCCCGCGATTTGCTGGTCAGTCCAATTTCTGAACGAAAACACCAACGAG
ACAGATGCTGGGCCGTTCATTGTGCCAGACAAGAAAAATCCTCCTGTGCC
AGCTGACCGTTCTTCAAAGGTAAAACCTTTTGGTGTTTGATTTTGGGCGG
GTAAAGACCAATCTTTATTTAATTTTTACTAGATGTAGACACAGCGCTTC
CCAAAAACTTTGAGAGAAGAACTTATACTTTCATTTTCATACTATATTTA
TATATGCTGAGTGGTATAtTTTTTATGTTTTCTcCCCAGGCAAAAAAGGA
ATGGATTGAGGGGTGGTTGAAAGATCCTGCAGCAATGCTCGTTTCCCTGG
AAGCGTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig929:417643..418300+

>mRNA_H-akashiwo_Contig929.4.1 ID=mRNA_H-akashiwo_Contig929.4.1|Name=mRNA_H-akashiwo_Contig929.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=369bp|location=Sequence derived from alignment at H-akashiwo_Contig929:417643..418300+ (Heterosigma akashiwo CCMP452)
GCAGAGAGAGCAAGAAAAGCGAAGCGTCTTCAGACGGCCAAGTACATCGA
AGAAAACCGTAAACGCAAACTGAGGTGCTGGGAAGAACTGAACGAGAAAG
GTCTAAGCGGGTTGACAAAGGCCCAAGCCAAAACCGACTTGCGCGAACTA
TGTAAGGACCACCGCTCGGAAAGCCCTCAGCACCCCGCGATTTGCTGGTC
AGTCCAATTTCTGAACGAAAACACCAACGAGACAGATGCTGGGCCGTTCA
TTGTGCCAGACAAGAAAAATCCTCCTGTGCCAGCTGACCGTTCTTCAAAG
GCAAAAAAGGAATGGATTGAGGGGTGGTTGAAAGATCCTGCAGCAATGCT
CGTTTCCCTGGAAGCGTAA
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