mRNA_H-akashiwo_Contig928.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig928.2.1
Unique NamemRNA_H-akashiwo_Contig928.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig928.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig928contigH-akashiwo_Contig928:183334..185035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size330
Hectar predicted targeting categoryother localisation
Exons3
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388045.5950632-UTR-H-akashiwo_Contig928:183333..1833701681388045.5950632-UTR-H-akashiwo_Contig928:183333..183370Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig928 183334..183370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388045.6059973-CDS-H-akashiwo_Contig928:183370..1834241681388045.6059973-CDS-H-akashiwo_Contig928:183370..183424Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig928 183371..183424 +
1681388045.6167145-CDS-H-akashiwo_Contig928:183555..1837241681388045.6167145-CDS-H-akashiwo_Contig928:183555..183724Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig928 183556..183724 +
1681388045.6280835-CDS-H-akashiwo_Contig928:184967..1850351681388045.6280835-CDS-H-akashiwo_Contig928:184967..185035Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig928 184968..185035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig928.2.1prot_H-akashiwo_Contig928.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig928 183371..185035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig928.2.1

>prot_H-akashiwo_Contig928.2.1 ID=prot_H-akashiwo_Contig928.2.1|Name=mRNA_H-akashiwo_Contig928.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=97bp
MGNKPSSEEGRTVAKELQDDEAQTEHPEQDEVTTDLKLAEKKLLEAKWVE
ANAKKEFEEAMSEVRKLEATEDELGFGPLTSFTSAAGLSAAGEAVPP
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mRNA from alignment at H-akashiwo_Contig928:183334..185035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig928.2.1 ID=mRNA_H-akashiwo_Contig928.2.1|Name=mRNA_H-akashiwo_Contig928.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1702bp|location=Sequence derived from alignment at H-akashiwo_Contig928:183334..185035+ (Heterosigma akashiwo CCMP452)
ATGAGGAGGGAAGAAGAAAAATAACCAGGGCTAAGGAATGGGGAACAAAC
CCTCTTCAGAGGAAGGAAGGACAGTAGCAAAAGAGCTACAGGTTTAGTGA
TATAGTATCGATATCGATACGCCCTGTGATTTACCAGTACGTTTCAAAGC
CTACTTCATTTTGTCTCTGTGTAGTATCTCATGTCGACTTTGCGATCTCA
TTTTCTTTCATTCTTACATCAGGATGATGAGGCCCAAACTGAACATCCTG
AACAAGATGAGGTCACCACGGACCTCAAACTTGCAGAGAAGAAACTTCTA
GAGGCAAAATGGGTCGAAGCAAACGCCAAAAAGGAGTTTGAGGAAGCCAT
GTCCGAAGTTAGAAAGCTGGAGGCCACCGAAGATGAACTAGGTGAAGTGA
AACATGTCATCATGTATGTGCTTTCTTGGCTTGAAATCGTGAAGGGTGTT
GGTGTTCAATCTGTTAATGCGCGTGCAGTTGAACTGAATTCCGGCCGGCG
GCGCACCATCCTGCAGAATGATAGAAGTTAGAGTGGGTCGCTAATACTAC
ACTTGCTTTGGAGAGTAAAAGCAGGGGTAGCCAGTGTATTGAGCGATTGA
GCGGAAGGTATAATGCGCTATCGCTAGCTGACGAGACGACATCACCACCA
TCTTTTTCCAGTACGCCTGGCTTTCTCATAATTAAAAGAAGTTAAACAAA
GCTAAGAGCTACGGGAGGCTGTGGCGAAGGGCAGGACAGACGCTGACACT
CTGAAAAGGGAAGTTATGGAGCTAAGGAGAAGGGCCGAGCAGCAGAATGA
AATTGAAGAGAAGGCTGCGGAGAGCGGGGAGGACCATTGGCAGGAGGTGG
TGGAAAAGTCGCAGAGAGCGGCGGAGGGGGGGGTGAGTTGGGGGAGGGTG
GAGTGGCTCGGGGCCAGAGGCAGGGTGTTTGCGACACGGAAGGGCAGGAG
CGCACGGAAGTTCAGGGCTATAAACTTTGAAATTGGCTGTCAGGGATGCA
ACATTTTGTGGCACCCCAGCCTGGAGGAGTGCGAACTGGGGGGCTGTCAC
TTCTGCAGTGAAGGGAAAGGGGGGGGGTTGATGCGACGCCCGGACGGAGC
AAGAAGGAGTACTTCAAGAAGAAGCTAGAGCGGATGGGCATCGAGGGGCC
ATGGGCCTTCACCAATTGGGATCAGAGGGCGTATTTTGGGCAAAGGGAGC
AGTATGGGGGGGGGAGGGGGCGACTGGCGCAGGTGCGCAGCTGGAGGTAC
AACTATCTGGATGTTTCTTTTCTGTAGTGGGTAGGGCATTTGGGAGCATG
GGAGTAGAGGAAGGGGGCGGGCACGCAATTGGAAGTCAAGGGAAGATTTC
TGAAAGTTTTGGTGATGAATAGGAGTGAGAGGTGGAACCTAGTAGTGGCA
GGGTCCGCGTATGGAGGCTGGGGCTTCGGTCCTTGTAGTTATTCAAAAGG
CTGGACCTTAAATATATTAAAATCATCATCATCATCATCATATTCTGTTA
TATTATCATTATCAATATTATTATTATTTTCAAAATAAATTATATAGCAC
TACTAATGCCAAGGCTTTGGGCTCGAGCCGTTGTGGTCAGGTCAGGTTCC
TATGTACCTATTTCTTCATTGCCCTGTATGGCAGGGTTTGGACCCCTGAC
TTCTTTCACCTCTGCTGCCGGCCTGTCAGCAGCTGGGGAGGCCGTTCCGC
CG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig928:183334..185035+

>mRNA_H-akashiwo_Contig928.2.1 ID=mRNA_H-akashiwo_Contig928.2.1|Name=mRNA_H-akashiwo_Contig928.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=291bp|location=Sequence derived from alignment at H-akashiwo_Contig928:183334..185035+ (Heterosigma akashiwo CCMP452)
ATGGGGAACAAACCCTCTTCAGAGGAAGGAAGGACAGTAGCAAAAGAGCT
ACAGGATGATGAGGCCCAAACTGAACATCCTGAACAAGATGAGGTCACCA
CGGACCTCAAACTTGCAGAGAAGAAACTTCTAGAGGCAAAATGGGTCGAA
GCAAACGCCAAAAAGGAGTTTGAGGAAGCCATGTCCGAAGTTAGAAAGCT
GGAGGCCACCGAAGATGAACTAGGGTTTGGACCCCTGACTTCTTTCACCT
CTGCTGCCGGCCTGTCAGCAGCTGGGGAGGCCGTTCCGCCG
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