mRNA_H-akashiwo_Contig926.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig926.9.1
Unique NamemRNA_H-akashiwo_Contig926.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig926.9.1 vs. uniprot
Match: A0A6V1LE72_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LE72_HETAK)

HSP 1 Score: 165 bits (417), Expect = 6.200e-49
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 3 
Query:   87 MRAAIFVAVVAYIFGAFHRTCVCGFPLSGLGVLLHNSKVRSATHRFQSHSLGSSKLNMETTSNESSGGIRFVTNKMCPFAQ 329
            MRAAIFVAVVAYIFGAFHRTCVCGFPLSGLGVLLHNSKVRSATHRFQSHSLGSSKLNMETTSNESSGGIRFVTNKMCPFAQ
Sbjct:    1 MRAAIFVAVVAYIFGAFHRTCVCGFPLSGLGVLLHNSKVRSATHRFQSHSLGSSKLNMETTSNESSGGIRFVTNKMCPFAQ 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig926.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V1LE72_HETAK6.200e-49100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig926contigH-akashiwo_Contig926:167778..168593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size329
Hectar predicted targeting categorysignal peptide
Exons3
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388045.1369927-CDS-H-akashiwo_Contig926:167777..1678841681388045.1369927-CDS-H-akashiwo_Contig926:167777..167884Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig926 167778..167884 -
1681388045.1483924-CDS-H-akashiwo_Contig926:168255..1683011681388045.1483924-CDS-H-akashiwo_Contig926:168255..168301Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig926 168256..168301 -
1681388045.1592894-CDS-H-akashiwo_Contig926:168417..1685071681388045.1592894-CDS-H-akashiwo_Contig926:168417..168507Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig926 168418..168507 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388045.171771-UTR-H-akashiwo_Contig926:168507..1685931681388045.171771-UTR-H-akashiwo_Contig926:168507..168593Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig926 168508..168593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig926.9.1prot_H-akashiwo_Contig926.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig926 167778..168507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig926.9.1

>prot_H-akashiwo_Contig926.9.1 ID=prot_H-akashiwo_Contig926.9.1|Name=mRNA_H-akashiwo_Contig926.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=81bp
MRAAIFVAVVAYIFGAFHRTCVCGFPLSGLGVLLHNSKVRSATHRFQSHS
LGSSKLNMETTSNESSGGIRFVTNKMCPFAQ
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mRNA from alignment at H-akashiwo_Contig926:167778..168593-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig926.9.1 ID=mRNA_H-akashiwo_Contig926.9.1|Name=mRNA_H-akashiwo_Contig926.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=816bp|location=Sequence derived from alignment at H-akashiwo_Contig926:167778..168593- (Heterosigma akashiwo CCMP452)
GTTGGGGATATAAAACGCCTGTTGCACTGATTATTAACCCGTTGCCAGAA
GCGAGGCCAGTGAAAGGCTAGTCTTCACTTTCCCAGATGAGAGCTGCAAT
CTTTGTAGCGGTGGTCGCTTATATTTTCGGAGCTTTTCATCGGACTTGCG
TGTGTGGCTTTCCCCTTTCAGGATTGGTGAGTCTTAAGGGAACTCTTTGA
TGGCTAGAATGTAGCTTTCCTGGAATCAACTAGGTATAGATCCTGTTTAA
GTCCGGGAAAATATCCAAAATAACTTTTCTTCGATTGATCAGGGTGTCCT
TCTTCATAACTCAAAGGTTCGATCGGCAACCCATAGATGTAAGCTGTTGC
TTCTGTATTATGCACATTATGTTCTACTAACTTGACAATAAACAGAGAAA
ACAAACAACAAAATTATTTTAGGCCAACTTATTCAATATTATATTATGCA
TCACCCTAGGATGTTCTACTGAAAATGAATATACACTTGACAATAAATAA
TAGAGAAAACAAACAACATAAATATTTTAGGCCAACTTGTTCAATATTAT
TATAGTATTTTTTGTTGGCCTAAAAATATTTTTTGCAGTCGCTTCAGAAA
ACTAAGTATGCTTTGGCTTCCGAGCTCCTTTCTCTACTACAACACAAGTA
TTGTTTACAACTCACCGTTTGCCCTTTCCCTGATTGTTGTTGCTGAAAAT
GTTGGGCAGTCCAATCGCATTCACTGGGTTCTTCAAAGCTGAATATGGAG
ACAACCAGTAATGAATCTTCTGGTGGTATCCGTTTTGTGACAAACAAGAT
GTGCCCTTTTGCTCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig926:167778..168593-

>mRNA_H-akashiwo_Contig926.9.1 ID=mRNA_H-akashiwo_Contig926.9.1|Name=mRNA_H-akashiwo_Contig926.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=243bp|location=Sequence derived from alignment at H-akashiwo_Contig926:167778..168593- (Heterosigma akashiwo CCMP452)
ATGAGAGCTGCAATCTTTGTAGCGGTGGTCGCTTATATTTTCGGAGCTTT
TCATCGGACTTGCGTGTGTGGCTTTCCCCTTTCAGGATTGGGTGTCCTTC
TTCATAACTCAAAGGTTCGATCGGCAACCCATAGATTCCAATCGCATTCA
CTGGGTTCTTCAAAGCTGAATATGGAGACAACCAGTAATGAATCTTCTGG
TGGTATCCGTTTTGTGACAAACAAGATGTGCCCTTTTGCTCAG
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