mRNA_H-akashiwo_Contig926.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig926.1.1
Unique NamemRNA_H-akashiwo_Contig926.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig926.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig926contigH-akashiwo_Contig926:40423..42186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size269
Hectar predicted targeting categoryother localisation
Exons5
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388045.0560892-CDS-H-akashiwo_Contig926:40422..404581681388045.0560892-CDS-H-akashiwo_Contig926:40422..40458Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig926 40423..40458 +
1681388045.0667477-CDS-H-akashiwo_Contig926:40557..406201681388045.0667477-CDS-H-akashiwo_Contig926:40557..40620Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig926 40558..40620 +
1681388045.0774553-CDS-H-akashiwo_Contig926:41292..413641681388045.0774553-CDS-H-akashiwo_Contig926:41292..41364Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig926 41293..41364 +
1681388045.0946734-CDS-H-akashiwo_Contig926:41587..416381681388045.0946734-CDS-H-akashiwo_Contig926:41587..41638Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig926 41588..41638 +
1681388045.1070209-CDS-H-akashiwo_Contig926:42141..421861681388045.1070209-CDS-H-akashiwo_Contig926:42141..42186Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig926 42142..42186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig926.1.1prot_H-akashiwo_Contig926.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig926 40423..42186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig926.1.1

>prot_H-akashiwo_Contig926.1.1 ID=prot_H-akashiwo_Contig926.1.1|Name=mRNA_H-akashiwo_Contig926.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=89bp
QKEEEDPQASKQDIAAAKIQAVMRGQHTRASMQHQKEDKAATLIESHFRG
FQVRTDQAKSLDHYDPTEFYQKLEAGMKIDKYGRNRALS
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mRNA from alignment at H-akashiwo_Contig926:40423..42186+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig926.1.1 ID=mRNA_H-akashiwo_Contig926.1.1|Name=mRNA_H-akashiwo_Contig926.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1764bp|location=Sequence derived from alignment at H-akashiwo_Contig926:40423..42186+ (Heterosigma akashiwo CCMP452)
CAGAAAGAAGAAGAGGATCcaCAAGCGAGCAAGCAGGTTCATTCTTTCTT
TCTGCCTTATTTCTTCAAGGACATCATGTGTTACTGGACATTACTGGCAA
AATGATGGTAACGTTTTTTCTCCATATTTCTTTAGGACATTGCTGCAGCC
AAGATTCAGGCCGTCATGCGAGGGCAGCACACTCGTGCTTCTATGCAGGT
ATGAAGCGTATGGCACATGATCGATTGGATTGTTGCCTGTATAGTATTAG
TATATAGTAGCTAGCTTGTTTCTTTCTAGTGAAGAAGCACTTTCTTGGCT
GAATCATGGTTCAAAGGAGAAAGAATATATACTAGATGGAGTAGCAGTAG
TAGTAGCATCATGCAGCGGCTATTTTTCTTTTTTCTGTTGTTTGGTTGGC
AGAATGATGATGTTGTTGAGGGGATATTGTTCTCATTCTCACCTCTCACC
CGAGCAGTTCATCATTTGGTTCATTGCTGACAAGGCGTGTTGATGACGGC
CAGACACTAACCTTGGCTGGTGGTATACTAAAAGCAGCTTGTCTGCGTCA
AATCTTGTAATGATTCAAAACCTTTGATGAGCAACATACATCTGTGACTG
CTGATGATATTTTGCTGATCTCCTCCAGCATTATTGGACTAGATGATATA
ATAAATAATTTATTAAAAAAATGATTTTTTTTTTGTGTTGATGATGATGA
TGATATATTGCTTCATTGATGAACCACTACTGGTACACACATCGTTTGTA
TAGTATTGTACAGTACAGGAACTAGTTATTTTAATGACCACCCTCCCCAT
CACTATACTcTCCTCCTATACTCCTGAAATTCATCATCAAACACATTGTA
ATTGGTAAAAAAAATTACAGCATCAGAAAGAAGATAAAGCTGCTACGCTA
ATAGAGTCGCACTTCCGTGGATTTCAAGTCAGAACTGATCAGGTGATTAA
AACTGTGATTTCATTACCATTACTATGACCAGAAATGCAGCATTGTTGTT
TCGTGGTGTGGTAATAGTAGTATATTATATTATTATATTATGTAATAATG
AATGGTAATGTATATACTATTTTTTTGTTGTTGTTAGTTTGAGGGGTGAA
AGAAGTGCTTGTAAAAGAATGACTGTTTCATTTTTGTACACAACATTCTT
CTGATCTAATGACAGGCCAAATCACTTGATCATTATGATCCTACAGAGTT
TTATCAAAAACTAGAGGTATGTCCGCTTTTAGGCGCTACTCACATCTCTG
AATTGATATAGGCGCTGCTCACATCTCTGAATTGGTTGATTTGAGTTGTG
GAATTGAAAAATGGTAGATTAAGGTGGAAGGGTCTGCTTATATAGAAGCT
AGGGGTTCTGCCCTGAAAGCGGTTTGAAAGGCTATACTGAAAACTAAATT
TGACATCATCCTCGTCTCTGAATTGATTCAATCCAACAGAAAAAGTATGT
TGACTACTCACAAGCTATTATTATCTTATTATGATGATGAGTAGTAGTAG
TGAGTATCATCAGTCACCCACATTGTACATCTTTGTTGTTTTTCCCAAGT
CCCTGTATGTTCGTTTTACAGTAGTGAATCATTGATGTAAAGCTGCATGT
CCCTCATCAGTCCTTATACGTTGCAGCCCCATTCGTATCAAACACCAACA
AGCCATATTACTTACTGCTGCTCGGTCTTCTTCTTTTTATTTTGGTGGGC
TGGTGGGGGGGGTCTGCAGGCTGGCATGAAGATTGATAAATATGGTCGTA
ACAGAGCCCTCTCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig926:40423..42186+

>mRNA_H-akashiwo_Contig926.1.1 ID=mRNA_H-akashiwo_Contig926.1.1|Name=mRNA_H-akashiwo_Contig926.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=267bp|location=Sequence derived from alignment at H-akashiwo_Contig926:40423..42186+ (Heterosigma akashiwo CCMP452)
CAGAAAGAAGAAGAGGATCcaCAAGCGAGCAAGCAGGACATTGCTGCAGC
CAAGATTCAGGCCGTCATGCGAGGGCAGCACACTCGTGCTTCTATGCAGC
ATCAGAAAGAAGATAAAGCTGCTACGCTAATAGAGTCGCACTTCCGTGGA
TTTCAAGTCAGAACTGATCAGGCCAAATCACTTGATCATTATGATCCTAC
AGAGTTTTATCAAAAACTAGAGGCTGGCATGAAGATTGATAAATATGGTC
GTAACAGAGCCCTCTCC
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