mRNA_H-akashiwo_Contig924.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig924.8.1
Unique NamemRNA_H-akashiwo_Contig924.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig924.8.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 465 bits (1197), Expect = 3.680e-162
Identity = 225/313 (71.88%), Postives = 264/313 (84.35%), Query Frame = 1
Query:   58 LTLHDFLLQQNFVRSDYESCLYTRRNPITGEDSMVAVYVDDLVLSSNLPSVITDLKASFASKFQITDLGPLNQILGIKVTIDHRNKCFFLSQASFIKDAISKFGLDFLPAVRTPMDHTADLAPTPGFKSSLSDSNRYRSMVGTLAWVANWTRPELAFMVHKLQRHQSNPEPKHFEAAQRAFRYLKGTQSEQLRLGGDLVLRAYTDADFCQDRIKGKSVTGYVIMLGDSTIVWASKLQTAVSSSTVEAEYLSLRSSLKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARDMVVSRKNRHFHVSYHLAKEQV 996
            + LHD L    F RS +ESCLY  R+   G + MVAVYVDDLV+S +  +V+++ K S ASK+ +TD G L QILGIKV  D RNKCF LSQ SFIKDA++KFGLD+LPA +TP+DHT DL PTPGFK+ LSD+N YRSMVGTLAWVANWTRPELAF VHKLQR Q NPEPKHFEA QRAFRYLKGTQSE LRLGGDLVLRA++D+DFC DR+ GKSVTGY++ LGD+ IVW+SKLQ AV++STVEAEYL+LRS++KDIMWLR LL ++GCPQ EPTPVVEDNSAC+EWA DM+V+++NRHFHVSYHLAKEQV
Sbjct:    1 MELHDHLESLGFKRSGHESCLYIHRDG--GNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQV 311          
BLAST of mRNA_H-akashiwo_Contig924.8.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 292 bits (747), Expect = 3.940e-95
Identity = 141/203 (69.46%), Postives = 163/203 (80.30%), Query Frame = 1
Query:    1 VWKLRKALYGLRQSPRIWYLTLHDFLLQQNFVRSDYESCLYTRRNPITGEDSMVAVYVDDLVLSSNLPSVITDLKASFASKFQITDLGPLNQILGIKVTIDHRNKCFFLSQASFIKDAISKFGLDFLPAVRTPMDHTADLAPTPGFKSSLSDSNRYRSMVGTLAWVANWTRPELAFMVHKLQRHQSNPEPKHFEAAQRAFRYL 609
            VWKL KALYGL+QSPR+WY+ LHD L    F RS +ESCLY  R+   G + MVAVYVDDLV+S +  +++++ K S ASK+ +TD G L QILGIKV  D RNKCF LSQ SFIKDA++KFGLD+LPA +TP+DHT DL PTPGFK+ LSD+N YRSMVGTLAWVANWTRPELAF VHKLQR Q NPEPKHFEA QRAFRYL
Sbjct:   68 VWKLNKALYGLKQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDG--GNELMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig924.8.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 280 bits (715), Expect = 6.890e-83
Identity = 143/334 (42.81%), Postives = 215/334 (64.37%), Query Frame = 1
Query:    1 VWKLRKALYGLRQSPRIWYLTLHDFLLQQNFVRSDYESCLYTRRNPITGEDSMVAVYVDDLVLSSNLPSVITDLKASFASKFQITDLGPLNQILGIKVTIDHRNKCFFLSQASFIKDAISKFGLDFLPAVRTPMDHTADLAPTPGFKSSLS--DSNRYRSMVGTLAWVANWTRPELAFMVHKLQRHQSNPEPKHFEAAQRAFRYLKGTQSEQLRLGGDLVLRAYTDADFCQDRIKGKSVTGYVIMLGDSTIVWASKLQTAVSSSTVEAEYLSLRSSLKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARDMVVSRKNRHFHVSYHLAKEQV 996
            V KL+K+LYGL+Q+P+ WY  L+ FLLQQ + R+ Y+SC+Y++ +  TG  ++++VYVDD+VL+S+  S ++ +K + +  + ++D+G +  ILGIKV  D   +   LSQ SFI++A  KF +     V  P++   D+         LS  ++ ++RS+VGT+ W+A WT PE+A+ +H L +  ++P      A+    RYL  T+ + + LGG L L AY DADFC +R KG+S +G+ I LG S I+W+S++Q  V+ +T EAEY+SLR+++ D+MWL+ LL  LG  Q    P+ EDN ACI WA D  VS+  RH HVSYH  KE V
Sbjct:  626 VLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSS-TGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQG-CVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMV 957          
BLAST of mRNA_H-akashiwo_Contig924.8.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 259 bits (661), Expect = 3.080e-80
Identity = 120/154 (77.92%), Postives = 139/154 (90.26%), Query Frame = 1
Query:    1 VWKLRKALYGLRQSPRIWYLTLHDFLLQQNFVRSDYESCLYTRRNPITGEDSMVAVYVDDLVLSSNLPSVITDLKASFASKFQITDLGPLNQILGIKVTIDHRNKCFFLSQASFIKDAISKFGLDFLPAVRTPMDHTADLAPTPGFKSSLSDSN 462
            VWKL+KALYGLRQSPR+WY TLH+FLLQQNFVRSDYESCLYTR+N +TGED+MVAVYVDDLVLSSN+PSV++ LK+SF S+F ITDLGPL  ILGIKV+ DH NKCF+LSQASF++DAISKFGLD+LPA RTPM +  DL PTPGFK+SL D+N
Sbjct:  256 VWKLKKALYGLRQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVLSSNIPSVVSSLKSSFVSRFSITDLGPLTSILGIKVSRDHTNKCFYLSQASFVRDAISKFGLDYLPACRTPMTNATDLTPTPGFKASLPDAN 409          
BLAST of mRNA_H-akashiwo_Contig924.8.1 vs. uniprot
Match: A0A146HFR8_MYCCL (Polyprotein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HFR8_MYCCL)

HSP 1 Score: 223 bits (568), Expect = 1.400e-66
Identity = 120/335 (35.82%), Postives = 192/335 (57.31%), Query Frame = 1
Query:    1 VWKLRKALYGLRQSPRIWYLTLHDFLLQQNFVRSDYESCLYTRRNPITGEDSMVAVYVDDLVLSSNLPSVITDLKASFASKFQITDLGPLNQILGIKVTIDHRNKCFFLSQASFIKDAISKFGLDFLPAVRTPMDHTADLAPTPGFKSSLSDS---NRYRSMVGTLAWVANWTRPELAFMVHKLQRHQSNPEPKHFEAAQRAFRYLKGTQSEQLRLGGDLVLRAYTDADFCQDRIKGKSVTGYVIMLGDSTIVWASKLQTAVSSSTVEAEYLSLRSSLKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARDMVVSRKNRHFHVSYHLAKEQV 996
            V +L+ +LYGLRQ+ R W   L        F R   + C+Y RR+P T   ++VAV+VDD+ L +     +T +K   +SKF++TDLGPL QILG++++ +  +    LSQA++    +   G++   AV+TP+D    L P       + D+   + Y S +G L ++A  TRP+LAF V  L +    P P+H  A +R FRYL+GT S  +   G   L  ++DAD+  D    +S++GY+  LG S + WAS+ Q  V+ ST+EAEY++   +  +I+WLR L  +LG     PTP+  DN + I++A + +   +++H  + +H  +E+V
Sbjct:    5 VCRLKLSLYGLRQAGRNWNRELDAAFRSLGFTRLTADQCVYVRRDPKTDSPTIVAVHVDDMTLCARTDEELTQIKGELSSKFKVTDLGPLKQILGMEISQNPTDGSIRLSQANYASRVLESVGMEKANAVQTPLDPNVKLTPLAKGDPRIGDTAFRHGYLSGIGKLMYLAVATRPDLAFAVQHLSQFSIRPGPEHMSALKRVFRYLRGTTSLGIAFRGSGDLHIFSDADWGNDNTDRRSISGYLSFLGASPLSWASRKQPTVALSTMEAEYMAAARTTCEIIWLRQLASELGISVEAPTPIHIDNQSAIKFAENPMFHARSKHIDMRHHFVRERV 339          
BLAST of mRNA_H-akashiwo_Contig924.8.1 vs. uniprot
Match: A0A507DKM5_9FUNG (DNA-directed DNA polymerase (Fragment) n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DKM5_9FUNG)

HSP 1 Score: 215 bits (548), Expect = 8.770e-64
Identity = 125/336 (37.20%), Postives = 188/336 (55.95%), Query Frame = 1
Query:   19 ALYGLRQSPRIWYLTLHDFLLQQNFVRSDYESCLYTRRNPITGEDSMVAVYVDDLVLSSNLPSVITDLKASFASKFQITDLGPLNQILGIKVTIDHRNKCFFLSQASFIKDAISKFGLDFLPAVRTPMDHTADLAPTPGFKSSLSDS---NRYRSMVGTLAWVANWTRPELAFMVHKLQRHQSNPEPKHFEAAQRAFRYLKGTQSEQLRLGGDLV-LRAYTDADFCQDRIKGKSVTGYVIMLGDS-TIVWASKLQTAVSSSTVEAEYLSLRSSLKDIMWLRHLLVDLGCPQ-----AEPTPVVEDNSACIEWARDMVVSRKNRHFHVSYHLAKEQV 996
            ALYGL+Q+PR WY  LH  L    F R   ++ +Y R  P +     ++VYVDDL++ +   S I+ +K S  ++F +TDLG +N  LG++V  D+     +L Q S++ D + +FG+     V TPMD T  L P     +  S +     YR +VG+L ++   TRP++A  V  L R  SNP P+H +AA+R  RYL+GT    L +GG+ V L  Y+DAD+  + I  +S+TGY+  +G++  + WASK Q  V+ S+ EAEY++L  + ++ +WL  LL +L  P+     A PT + EDN +CI  A        N   H+ Y    E V
Sbjct:    1 ALYGLKQAPRKWYSLLHKELTSLGFKRLANDNAVYIRTLPKSDSSQYISVYVDDLLIFAKTKSEISSIKTSLHNEFNMTDLGEVNHYLGMRVRRDYSRHVIYLDQESYVNDILERFGMQDCKPVNTPMDRTK-LEPYEVENTKTSPNPQEGEYRKIVGSLVYLMICTRPDIAVAVSMLSRFASNPSPQHLQAAKRVLRYLRGTSDYSLCIGGNNVTLHGYSDADWGNNIIDRRSITGYLFYIGNAGPVTWASKRQPTVALSSTEAEYMALSFATQETIWLCSLLQELQIPEYLDENARPTTIYEDNQSCISLAM-------NPEIHLEYLPTAEMV 328          
BLAST of mRNA_H-akashiwo_Contig924.8.1 vs. uniprot
Match: UPI0018F8501A (uncharacterized mitochondrial protein AtMg00810-like n=5 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F8501A)

HSP 1 Score: 214 bits (546), Expect = 3.910e-63
Identity = 121/334 (36.23%), Postives = 189/334 (56.59%), Query Frame = 1
Query:    1 VWKLRKALYGLRQSPRIWYLTLHDFLLQQNFVRSDYESCLYTRRNPITGEDSMVAVYVDDLVLSSNLPSVITDLKASFASKFQITDLGPLNQILGIKVTIDHRNKCFFLSQASFIKDAISKFGLDFLPAVRTPMDHTADLAPTPGFKSSLSDSNRYRSMVGTLAWVANWTRPELAFMVHKLQRHQSNPEPKHFEAAQRAFRYLKGTQSEQLRLGG--DLVLRAYTDADFCQDRIKGKSVTGYVIMLGDSTIVWASKLQTAVSSSTVEAEYLSLRSSLKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARDMVVSRKNRHFHVSYHLAKEQV 996
            V +LR+ALYGL+Q+PR W+      + Q+ F  S Y+S  + RR  +      + +YVDD++++ +  S ITDLK     +F++ DLG L+  LG++V  D     ++LSQA +  D +++ GL       TP++    L P+ G  + LSD   YR +VG+L ++   TRP++A+ VH + +  S P   H+EA     RY+K T    L       L LRAY+D+D+  D    +S TG+ I+LGDS I W SK QT+V+ S+  AEY +L ++ ++I+WLR LL D+G     PTP+  DN + I  A + V   + +H  +  H  ++ V
Sbjct:   31 VCRLRRALYGLKQAPRAWFAKFSSTIQQRGFQSSSYDSAFFVRRTTLGCV--FLLIYVDDMIITGDDYSGITDLKEYLQQQFEMKDLGSLSYFLGLEVLSDTTG--YYLSQAKYASDLLARAGLTDSKITSTPLEPNIKLKPSDG--TPLSDITLYRQLVGSLVYLTV-TRPDIAYAVHVVSQFMSAPRSSHYEAVIHILRYIKATLYYGLHFSAASSLELRAYSDSDWAGDPTDRRSTTGFCILLGDSLISWRSKKQTSVARSSTVAEYRALATTTQEIVWLRWLLGDMGVQSPSPTPLFCDNRSAIHIAHNDVYHERTKHIEIDCHFTRQHV 357          
BLAST of mRNA_H-akashiwo_Contig924.8.1 vs. uniprot
Match: A0A2N9HMY8_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HMY8_FAGSY)

HSP 1 Score: 220 bits (560), Expect = 5.890e-63
Identity = 125/334 (37.43%), Postives = 188/334 (56.29%), Query Frame = 1
Query:    1 VWKLRKALYGLRQSPRIWYLTLHDFLLQQNFVRSDYESCLYTRRNPITGEDSMVAVYVDDLVLSSNLPSVITDLKASFASKFQITDLGPLNQILGIKVTIDHRNKCFFLSQASFIKDAISKFGLDFLPAVRTPMDHTADLAPTPGFKSSLSDSNRYRSMVGTLAWVANWTRPELAFMVHKLQRHQSNPEPKHFEAAQRAFRYLKGTQSEQLRLGGD--LVLRAYTDADFCQDRIKGKSVTGYVIMLGDSTIVWASKLQTAVSSSTVEAEYLSLRSSLKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARDMVVSRKNRHFHVSYHLAKEQV 996
            V +LR+ALYGL+Q+PR W+      + QQ F  S Y+S L+ R    TG  +++ +YVDD++++ +  + I DL+   + +F++ DLG L+  LG++VT       ++LSQA +  D +SK GL     V TP++    L  T G    LSD+  YR +VG+L ++   TRP+LA+ VH + +  S P   H+ A  R  RY+KGT    L       L LRAY DAD+  D    +S TGY  +LG S I W SK Q+ V+ S+ EAEY +L  +  +++WLR LL D+G PQ   TP+  DN + I  A + V   + +H  +  H  +  +
Sbjct:  269 VCRLRRALYGLKQAPRAWFAKFSSVVAQQGFTPSSYDSALFIRHTS-TGI-TLILLYVDDMIITGDDTAGICDLQKFLSQQFEMKDLGTLSYFLGLEVTSSSDG--YYLSQAKYASDLLSKAGLTDSKTVSTPLELNVKLNTTDG--EPLSDATLYRQLVGSLIYLTV-TRPDLAYAVHLVSQFMSAPRSTHYAAVLRILRYIKGTLFHGLHFSAQSSLELRAYADADWAGDPTDRRSTTGYCFLLGSSLISWRSKKQSVVARSSTEAEYRALADATSELLWLRWLLADMGAPQTTSTPIHCDNRSAIHIAHNDVFHERTKHIEIDCHFIRHHL 595          
BLAST of mRNA_H-akashiwo_Contig924.8.1 vs. uniprot
Match: A0A2N9J7J4_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J7J4_FAGSY)

HSP 1 Score: 225 bits (573), Expect = 1.790e-62
Identity = 126/334 (37.72%), Postives = 189/334 (56.59%), Query Frame = 1
Query:    1 VWKLRKALYGLRQSPRIWYLTLHDFLLQQNFVRSDYESCLYTRRNPITGEDSMVAVYVDDLVLSSNLPSVITDLKASFASKFQITDLGPLNQILGIKVTIDHRNKCFFLSQASFIKDAISKFGLDFLPAVRTPMDHTADLAPTPGFKSSLSDSNRYRSMVGTLAWVANWTRPELAFMVHKLQRHQSNPEPKHFEAAQRAFRYLKGTQSEQLRLGGD--LVLRAYTDADFCQDRIKGKSVTGYVIMLGDSTIVWASKLQTAVSSSTVEAEYLSLRSSLKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARDMVVSRKNRHFHVSYHLAKEQV 996
            V +LR+ALYGL+Q+PR W+      + QQ F  S Y+S L+ R    TG  +++ +YVDD++++ +  + I DL+   + +F++ DLG L+  LG++VT    + C++LSQA +  D +SK GL     V TP++    L  T G    LSD+  YR +VG+L ++   TRP+LA+ VH + +  S P   H+ A  R  RY+KGT    L       L LRAY DAD+  D    +S TGY  +LG S I W SK Q+ V+ S+ EAEY +L  +  +++WLR LL D+G PQ   TP+  DN + I  A + V     +H  +  H  +  +
Sbjct:  863 VCRLRRALYGLKQAPRAWFAKFSSVVAQQGFTPSSYDSALFIRHTS-TGI-TLILLYVDDMIITGDDTADICDLQKFLSQQFEMKDLGTLSYFLGLEVTSS--SDCYYLSQAKYASDLLSKAGLTDSKTVSTPLELNVKLNTTDG--EPLSDATLYRQLVGSLIYLTV-TRPDLAYAVHLVSQFMSAPRSTHYAAVLRILRYIKGTLFHGLHFSAQSSLELRAYADADWAGDPTDRRSTTGYCFLLGSSLISWRSKKQSVVARSSTEAEYRALADATSELLWLRWLLADMGAPQTTSTPIHRDNRSAIHIAHNDVFHEHTKHIEIDCHFIRHHL 1189          
BLAST of mRNA_H-akashiwo_Contig924.8.1 vs. uniprot
Match: UPI0018F7FBB2 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F7FBB2)

HSP 1 Score: 212 bits (539), Expect = 2.670e-62
Identity = 120/322 (37.27%), Postives = 186/322 (57.76%), Query Frame = 1
Query:    1 VWKLRKALYGLRQSPRIWYLTLHDFLLQQNFVRSDYESCLYTRRNPITGEDSMVAVYVDDLVLSSNLPSVITDLKASFASKFQITDLGPLNQILGIKVTIDHRNKCFFLSQASFIKDAISKFGLDFLPAVRTPMDHTADLAPTPGFKSSLSDSNRYRSMVGTLAWVANWTRPELAFMVHKLQRHQSNPEPKHFEAAQRAFRYLKGTQSEQLRLG--GDLVLRAYTDADFCQDRIKGKSVTGYVIMLGDSTIVWASKLQTAVSSSTVEAEYLSLRSSLKDIMWLRHLLVDLGCPQAEPTPVVEDNSACIEWARDMVVSRKNRH 960
            V +LR+ALYGL+Q+PR W+      + Q+ F  S Y+S  + RR  +      + +YVDD++++ +  S ITDLK     +F++ DLG L+  LG++V  D     ++LSQA +  D +++ GL       TP++    L P+ G  + LSD   YR +VG+L ++   TRP++A++VH + +  S P   H+EA     RY+K T    L       L LRAY+D+D+  D    +S TG+ I+LGDS I W SK QT+V+ S+ EAEY +L ++ ++I+WLR LL D+G     PTP+  DN + I  A + V   + +H
Sbjct:   38 VCRLRRALYGLKQAPRAWFAKFSSTIQQRGFQSSSYDSAFFVRRTALGCV--FLLIYVDDMIITGDDYSGITDLKEYLQQQFEMKDLGSLSYFLGLEVLSDTTG--YYLSQAKYASDLLARAGLTDSKITSTPLEPNIKLKPSDG--TPLSDITLYRQLVGSLVYLTV-TRPDIAYVVHVVSQFMSAPRSSHYEAVIHILRYIKATLYYGLHFSTASSLELRAYSDSDWAGDPTDRRSTTGFCILLGDSLISWRSKKQTSVARSSTEAEYRALATTTQEIVWLRWLLGDMGVQSPSPTPLFCDNRSAIHIAHNDVYHERTKH 352          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig924.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK3.680e-16271.88Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK3.940e-9569.46Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK6.890e-8342.81Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y3B6_HETAK3.080e-8077.92Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A146HFR8_MYCCL1.400e-6635.82Polyprotein (Fragment) n=1 Tax=Mycena chlorophos T... [more]
A0A507DKM5_9FUNG8.770e-6437.20DNA-directed DNA polymerase (Fragment) n=1 Tax=Pow... [more]
UPI0018F8501A3.910e-6336.23uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A2N9HMY8_FAGSY5.890e-6337.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9J7J4_FAGSY1.790e-6237.72Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
UPI0018F7FBB22.670e-6237.27uncharacterized mitochondrial protein AtMg00810-li... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig924contigH-akashiwo_Contig924:433765..434760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra85518
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size996
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorymitochondrion
Exons1
Evalue2.77e-55
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales
DescriptionGAG-pre-integrase domain
Cds size996
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388044.8522995-CDS-H-akashiwo_Contig924:433764..4347601681388044.8522995-CDS-H-akashiwo_Contig924:433764..434760Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig924 433765..434760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig924.8.1prot_H-akashiwo_Contig924.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig924 433765..434760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig924.8.1

>prot_H-akashiwo_Contig924.8.1 ID=prot_H-akashiwo_Contig924.8.1|Name=mRNA_H-akashiwo_Contig924.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=332bp
VWKLRKALYGLRQSPRIWYLTLHDFLLQQNFVRSDYESCLYTRRNPITGE
DSMVAVYVDDLVLSSNLPSVITDLKASFASKFQITDLGPLNQILGIKVTI
DHRNKCFFLSQASFIKDAISKFGLDFLPAVRTPMDHTADLAPTPGFKSSL
SDSNRYRSMVGTLAWVANWTRPELAFMVHKLQRHQSNPEPKHFEAAQRAF
RYLKGTQSEQLRLGGDLVLRAYTDADFCQDRIKGKSVTGYVIMLGDSTIV
WASKLQTAVSSSTVEAEYLSLRSSLKDIMWLRHLLVDLGCPQAEPTPVVE
DNSACIEWARDMVVSRKNRHFHVSYHLAKEQV
back to top

mRNA from alignment at H-akashiwo_Contig924:433765..434760-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig924.8.1 ID=mRNA_H-akashiwo_Contig924.8.1|Name=mRNA_H-akashiwo_Contig924.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=996bp|location=Sequence derived from alignment at H-akashiwo_Contig924:433765..434760- (Heterosigma akashiwo CCMP452)
GTTTGGAAGCTTCGTAAAGCCCTCTATGGCCTGCGCCAGTCTCCCAGAAT CTGGTACCTTACACTTCACGATTTTCTTCTCCAGCAAAACTTTGTCCGCA GCGACTATGAATCTTGTCTTTACACGCGCAGAAATCCCATCACTGGTGAG GATTCCATGGTGGCGGTATATGTAGATGATCTTGTCCTTAGTAGTAATCT TCCTTCCGTCATCACCGATCTCAAAGCCTCTTTTGCGTCTAAGTTTCAAA TCACAGATCTAGGTCCTCTTAACCAGATCCTTGGCATCAAAGTAACCATA GACCATCGTAATAAGTGCTTCTTCCTAAGTCAGGCCTCGTTCATTAAGGA CGCCATCTCTAAGTTCGGTTTGGATTTTCTTCCGGCTGTTCGCACCCCCA TGGACCACACTGCCGATCTGGCGCCTACGCCCGGGTTCAAGTCCTCTTTG TCTGATTCAAACAGGTATCGATCCATGGTTGGGACCCTGGCTTGGGTGGC TAACTGGACCAGGCCCGAGCTTGCCTTCATGGTGCACAAGCTCCAACGTC ATCAAAGTAACCCTGAGCCTAAACACTTTGAGGCAGCCCAGCGGGCTTTC AGATACCTCAAAGGCACCCAGTCTGAACAGCTGAGACTTGGTGGTGACCT TGTTCTCCGAGCTTACACTGATGCTGATTTTTGTCAAGACAGGATCAAGG GCAAGTCTGTCACAGGCTATGTGATCATGCTTGGGGACTCAACTATTGTG TGGGCCTCAAAGCTCCAAACTGCAGTTAGTAGTTCTACTGTGGAAGCTGA GTACCTCTCACTGAGGTCTAGTCTGAAGGACATTATGTGGCTGAGGCATC TTCTCGTGGACCTTGGCTGCCCTCAGGCTGAGCCTACACCAGTGGTTGAA GACAACTCTGCCTGTATTGAGTGGGCAAGAGACATGGTGGTTTCCAGAAA AAACAGGCATTTTCATGTGTCATACCACCTGGCTAAAGAGCAGGTC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig924:433765..434760-

>mRNA_H-akashiwo_Contig924.8.1 ID=mRNA_H-akashiwo_Contig924.8.1|Name=mRNA_H-akashiwo_Contig924.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=996bp|location=Sequence derived from alignment at H-akashiwo_Contig924:433765..434760- (Heterosigma akashiwo CCMP452)
GTTTGGAAGCTTCGTAAAGCCCTCTATGGCCTGCGCCAGTCTCCCAGAAT
CTGGTACCTTACACTTCACGATTTTCTTCTCCAGCAAAACTTTGTCCGCA
GCGACTATGAATCTTGTCTTTACACGCGCAGAAATCCCATCACTGGTGAG
GATTCCATGGTGGCGGTATATGTAGATGATCTTGTCCTTAGTAGTAATCT
TCCTTCCGTCATCACCGATCTCAAAGCCTCTTTTGCGTCTAAGTTTCAAA
TCACAGATCTAGGTCCTCTTAACCAGATCCTTGGCATCAAAGTAACCATA
GACCATCGTAATAAGTGCTTCTTCCTAAGTCAGGCCTCGTTCATTAAGGA
CGCCATCTCTAAGTTCGGTTTGGATTTTCTTCCGGCTGTTCGCACCCCCA
TGGACCACACTGCCGATCTGGCGCCTACGCCCGGGTTCAAGTCCTCTTTG
TCTGATTCAAACAGGTATCGATCCATGGTTGGGACCCTGGCTTGGGTGGC
TAACTGGACCAGGCCCGAGCTTGCCTTCATGGTGCACAAGCTCCAACGTC
ATCAAAGTAACCCTGAGCCTAAACACTTTGAGGCAGCCCAGCGGGCTTTC
AGATACCTCAAAGGCACCCAGTCTGAACAGCTGAGACTTGGTGGTGACCT
TGTTCTCCGAGCTTACACTGATGCTGATTTTTGTCAAGACAGGATCAAGG
GCAAGTCTGTCACAGGCTATGTGATCATGCTTGGGGACTCAACTATTGTG
TGGGCCTCAAAGCTCCAAACTGCAGTTAGTAGTTCTACTGTGGAAGCTGA
GTACCTCTCACTGAGGTCTAGTCTGAAGGACATTATGTGGCTGAGGCATC
TTCTCGTGGACCTTGGCTGCCCTCAGGCTGAGCCTACACCAGTGGTTGAA
GACAACTCTGCCTGTATTGAGTGGGCAAGAGACATGGTGGTTTCCAGAAA
AAACAGGCATTTTCATGTGTCATACCACCTGGCTAAAGAGCAGGTC
back to top